Wall clock time and date at job start Mon Mar 30 2020 07:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48502 * 109.47045 * 270.00174 * 3 2 1 5 5 H 1.48499 * 109.47277 * 30.00426 * 3 2 1 6 6 H 1.48498 * 109.47156 * 150.00508 * 3 2 1 7 7 C 1.37879 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47030 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46845 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99975 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00096 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47211 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.35659 * 308.86683 * 16 15 13 18 18 C 1.54578 * 110.50232 * 71.25221 * 16 15 13 19 19 C 1.55930 * 104.64437 * 118.84336 * 18 16 15 20 20 H 1.08992 * 116.53392 * 160.39899 * 19 18 16 21 21 C 1.55927 * 104.49402 * 289.72517 * 19 18 16 22 22 C 1.54578 * 104.64779 * 70.27733 * 21 19 18 23 23 C 1.55916 * 110.40547 * 186.53678 * 16 15 13 24 24 H 1.08998 * 116.53393 * 80.69401 * 23 16 15 25 25 C 1.56949 * 100.65355 * 207.31315 * 23 16 15 26 26 H 0.97002 * 119.99880 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47608 * 59.99484 * 9 7 2 28 28 H 1.09001 * 109.46837 * 299.99720 * 9 7 2 29 29 H 1.08996 * 109.47361 * 59.99997 * 10 9 7 30 30 H 1.09001 * 109.47224 * 299.99739 * 10 9 7 31 31 H 1.09001 * 109.47071 * 60.00351 * 11 10 9 32 32 H 1.08993 * 109.46940 * 299.99873 * 11 10 9 33 33 H 0.97002 * 120.00232 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.47031 * 59.99924 * 15 13 12 35 35 H 1.09001 * 109.47164 * 299.99708 * 15 13 12 36 36 H 1.09007 * 110.40459 * 0.05397 * 18 16 15 37 37 H 1.08995 * 110.40780 * 237.63301 * 18 16 15 38 38 H 1.09008 * 110.40236 * 189.06689 * 21 19 18 39 39 H 1.09000 * 110.40540 * 311.36637 * 21 19 18 40 40 H 1.09003 * 110.40662 * 118.78702 * 22 21 19 41 41 H 1.09001 * 110.40620 * 241.20776 * 22 21 19 42 42 H 1.09004 * 112.02488 * 296.82509 * 25 23 16 43 43 H 1.09008 * 112.02753 * 170.30506 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 7 2.4322 -6.1006 -0.0037 13 6 1.9829 -7.3714 -0.0047 14 8 0.7905 -7.5930 -0.0048 15 6 2.9622 -8.5168 -0.0045 16 6 2.1972 -9.8418 -0.0052 17 1 1.4519 -9.8497 0.7902 18 6 1.5242 -10.0777 -1.3766 19 6 2.1664 -11.3948 -1.9096 20 1 1.6190 -11.9221 -2.6907 21 6 3.6354 -11.0012 -2.2538 22 6 4.3085 -10.7653 -0.8824 23 6 3.1827 -11.0385 0.1614 24 1 3.5163 -11.2570 1.1758 25 6 2.3828 -12.1764 -0.5658 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5574 0.8880 29 1 2.8719 -3.6051 0.8872 30 1 2.8718 -3.6036 -0.8927 31 1 0.8532 -5.0443 -0.8931 32 1 0.8539 -5.0453 0.8868 33 1 3.3859 -5.9234 -0.0039 34 1 3.5882 -8.4595 0.8860 35 1 3.5896 -8.4586 -0.8940 36 1 1.7385 -9.2498 -2.0525 37 1 0.4481 -10.2017 -1.2555 38 1 4.1316 -11.8129 -2.7860 39 1 3.6547 -10.0891 -2.8504 40 1 5.1355 -11.4610 -0.7402 41 1 4.6587 -9.7361 -0.8029 42 1 1.4402 -12.3975 -0.0652 43 1 2.9856 -13.0736 -0.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:52 Heat of formation + Delta-G solvation = -84.133840 kcal Electronic energy + Delta-G solvation = -19856.066666 eV Core-core repulsion = 16898.859242 eV Total energy + Delta-G solvation = -2957.207424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65923 -40.15660 -36.95933 -35.18065 -33.42577 -32.68349 -30.74589 -29.52818 -28.64948 -26.62802 -24.72559 -22.69823 -22.31557 -21.24689 -20.83510 -19.20316 -18.55301 -18.03698 -17.23580 -16.87102 -16.66543 -16.42608 -15.92849 -15.66480 -15.09898 -14.52374 -14.20514 -13.90319 -13.77121 -13.44241 -13.32675 -13.01462 -12.75117 -12.56124 -12.40281 -12.34580 -12.26444 -12.09607 -11.80344 -11.68760 -11.64237 -11.55677 -11.40768 -11.25007 -11.08239 -10.77279 -10.65540 -10.56922 -10.05925 -8.20792 -6.32696 1.41036 1.42620 1.53650 1.70676 2.26910 2.42533 3.12937 3.52795 3.60523 3.63831 3.97147 4.14529 4.16583 4.20137 4.21163 4.37296 4.47262 4.53663 4.54540 4.60432 4.65998 4.69641 4.78982 4.91481 4.93913 4.99224 5.01267 5.10971 5.15335 5.24651 5.27392 5.31435 5.36565 5.42932 5.45327 5.49459 5.53895 5.60567 5.68620 5.82526 6.20663 6.64093 6.85120 7.33378 7.37248 8.91503 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.050801 B = 0.002773 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.032980 B =10094.118833 C =10285.712758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.719 5.719 13 C 0.500 3.500 14 O -0.589 6.589 15 C -0.126 4.126 16 C -0.073 4.073 17 H 0.056 0.944 18 C -0.108 4.108 19 C -0.109 4.109 20 H 0.098 0.902 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.093 4.093 24 H 0.112 0.888 25 C -0.123 4.123 26 H 0.263 0.737 27 H -0.010 1.010 28 H -0.009 1.009 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -24.641 -1.584 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.371 5.371 13 C 0.288 3.712 14 O -0.469 6.469 15 C -0.165 4.165 16 C -0.092 4.092 17 H 0.074 0.926 18 C -0.146 4.146 19 C -0.127 4.127 20 H 0.116 0.884 21 C -0.159 4.159 22 C -0.164 4.164 23 C -0.111 4.111 24 H 0.130 0.870 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.252 0.748 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.341 -24.663 -1.588 27.192 hybrid contribution -0.199 1.400 -0.063 1.415 sum 11.142 -23.264 -1.651 25.847 Atomic orbital electron populations 1.70118 1.08022 1.27839 1.51691 1.26054 0.95757 1.03670 0.94735 0.85391 0.78688 0.78134 0.78491 1.19775 1.21029 1.18316 1.21686 0.93780 0.91978 1.50487 0.91444 1.18946 0.94466 0.93130 0.94916 1.21588 0.98373 0.91782 1.02116 1.21175 0.92120 0.85952 1.00234 1.46061 1.11036 1.05237 1.74797 1.21595 0.90081 0.84806 0.74682 1.90680 1.19397 1.85436 1.51436 1.21954 0.97338 0.90776 1.06452 1.21895 0.96855 0.93038 0.97387 0.92555 1.22553 0.98654 0.97213 0.96139 1.23637 0.96487 0.95141 0.97454 0.88404 1.22625 0.94664 1.01127 0.97454 1.22794 0.97324 1.02629 0.93680 1.23631 0.94917 0.93412 0.99148 0.87006 1.23568 0.99721 0.97471 0.95264 0.92790 0.99162 0.99102 0.91310 0.91345 0.93730 0.93645 0.74763 0.86234 0.86443 0.93381 0.94085 0.91074 0.92385 0.90654 0.90324 0.92103 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.22 4.97 29.84 0.15 1.37 16 10 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 11 C 0.13 4.68 5.68 86.38 0.49 5.18 16 12 N -0.72 -19.64 5.56 -463.04 -2.57 -22.21 16 13 C 0.50 14.11 7.54 87.66 0.66 14.78 16 14 O -0.59 -22.39 15.29 -3.05 -0.05 -22.43 16 15 C -0.13 -2.24 4.03 29.85 0.12 -2.12 16 16 C -0.07 -1.42 2.27 -9.25 -0.02 -1.44 16 17 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 18 C -0.11 -2.35 5.02 32.15 0.16 -2.19 16 19 C -0.11 -1.74 5.19 -7.38 -0.04 -1.77 16 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.12 -1.59 6.21 32.14 0.20 -1.39 16 22 C -0.13 -1.42 5.86 32.15 0.19 -1.23 16 23 C -0.09 -1.24 4.92 -7.38 -0.04 -1.27 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 C -0.12 -1.72 6.42 33.37 0.21 -1.50 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.42 8.29 8.47 -92.71 -0.79 7.51 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.64 6.20 -2.39 -0.01 1.63 16 36 H 0.05 1.16 7.28 -2.38 -0.02 1.14 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.06 0.83 7.84 -2.39 -0.02 0.81 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.78 5.44 -2.39 -0.01 0.77 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -71.01 336.07 2.82 -68.19 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.19 Total: 13.31 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 2.94 Total: -25.33 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.29 Total: -79.65 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.01 2.82 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.947 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds