Wall clock time and date at job start Mon Mar 30 2020 08:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 115.55929 * 2 1 4 4 C 1.52992 * 117.50357 * 145.69305 * 2 1 3 5 5 C 1.50694 * 117.50173 * 214.97938 * 4 2 1 6 6 O 1.21287 * 120.00299 * 251.61887 * 5 4 2 7 7 N 1.34778 * 120.00176 * 71.61451 * 5 4 2 8 8 C 1.46503 * 120.00245 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47447 * 89.99738 * 8 7 5 10 10 H 1.08009 * 119.99824 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99982 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99521 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00073 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46732 * 89.99860 * 13 11 9 15 15 H 1.48501 * 109.46986 * 209.99972 * 13 11 9 16 16 H 1.48498 * 109.46970 * 330.00415 * 13 11 9 17 17 C 1.46503 * 119.99994 * 0.02562 * 7 5 4 18 18 C 1.53002 * 117.49973 * 188.74911 * 17 7 5 19 19 C 1.52995 * 117.49863 * 120.08769 * 17 7 5 20 20 C 1.52997 * 60.00188 * 107.48692 * 4 2 1 21 21 C 1.52995 * 117.49683 * 107.48787 * 20 4 2 22 22 C 1.52998 * 117.49892 * 252.51185 * 20 4 2 23 23 H 1.08998 * 109.47336 * 325.69413 * 1 2 3 24 24 H 1.09001 * 109.47647 * 85.70178 * 1 2 3 25 25 H 1.09006 * 109.46976 * 205.70367 * 1 2 3 26 26 H 1.08997 * 109.47610 * 199.57085 * 3 2 1 27 27 H 1.09001 * 109.47484 * 319.57417 * 3 2 1 28 28 H 1.09001 * 109.47170 * 79.56989 * 3 2 1 29 29 H 1.09008 * 117.49784 * 359.97350 * 4 2 1 30 30 H 1.08996 * 109.46715 * 329.99519 * 8 7 5 31 31 H 1.09005 * 109.46746 * 210.00006 * 8 7 5 32 32 H 0.97001 * 119.99788 * 179.97438 * 12 11 9 33 33 H 1.09004 * 115.54936 * 334.42096 * 17 7 5 34 34 H 1.08993 * 117.50008 * 359.97438 * 18 17 7 35 35 H 1.09004 * 117.49922 * 145.02246 * 18 17 7 36 36 H 1.09004 * 117.49961 * 214.97826 * 19 17 7 37 37 H 1.09000 * 117.50088 * 359.97438 * 19 17 7 38 38 H 1.09004 * 109.47266 * 111.39562 * 21 20 4 39 39 H 1.09003 * 109.47247 * 231.39211 * 21 20 4 40 40 H 1.09004 * 109.47365 * 351.39444 * 21 20 4 41 41 H 1.08995 * 109.47367 * 8.61024 * 22 20 4 42 42 H 1.09000 * 109.47426 * 128.61102 * 22 20 4 43 43 H 1.09007 * 109.46948 * 248.60483 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 0.7648 5 6 3.5293 -0.7811 1.4606 6 8 4.5809 -1.1991 1.0244 7 7 3.5170 -0.0125 2.5677 8 6 4.7738 0.3183 3.2438 9 6 5.3323 1.5948 2.6697 10 1 4.8036 2.1085 1.8803 11 6 6.5181 2.1068 3.1520 12 7 7.0057 3.2205 2.6505 13 14 7.4321 1.2186 4.5178 14 1 8.3821 0.2434 3.9247 15 1 8.1820 2.2060 5.3351 16 1 6.4587 0.5003 5.3790 17 6 2.2467 0.4921 3.0950 18 6 2.3100 1.5209 4.2257 19 6 1.8623 0.0869 4.5194 20 6 2.2364 -1.1209 -0.7651 21 6 3.5489 -0.7757 -1.4716 22 6 1.3588 -2.1561 -1.4715 23 1 -0.3634 0.8489 0.5792 24 1 -0.3634 0.0770 -1.0247 25 1 -0.3633 -0.9260 0.4457 26 1 3.2204 1.2904 -0.3442 27 1 1.6411 2.0456 -0.6664 28 1 2.1790 1.7883 1.0107 29 1 1.6113 -1.8583 1.2685 30 1 5.4896 -0.4903 3.0961 31 1 4.5891 0.4497 4.3101 32 1 7.8398 3.5810 2.9901 33 1 1.4424 0.5939 2.3663 34 1 3.2966 1.8220 4.5776 35 1 1.5471 2.2994 4.2412 36 1 0.8050 -0.0775 4.7279 37 1 2.5542 -0.5555 5.0640 38 1 3.9365 -1.6632 -1.9719 39 1 3.3699 0.0076 -2.2081 40 1 4.2752 -0.4257 -0.7381 41 1 0.7297 -2.6603 -0.7380 42 1 0.7292 -1.6568 -2.2081 43 1 1.9922 -2.8886 -1.9719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074233651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:52 Heat of formation + Delta-G solvation = 13.596440 kcal Electronic energy + Delta-G solvation = -21816.898187 eV Core-core repulsion = 18863.928666 eV Total energy + Delta-G solvation = -2952.969521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37626 -37.91808 -36.60239 -33.19530 -32.04233 -30.95271 -28.93457 -28.38519 -27.16378 -26.00438 -23.11871 -22.20883 -21.87197 -20.52993 -17.90328 -17.60002 -16.91019 -16.59962 -15.35020 -15.24816 -14.68108 -14.26783 -14.02486 -13.87507 -13.25821 -13.07092 -12.62911 -12.51492 -12.31976 -12.25749 -12.04807 -11.88568 -11.70642 -11.67351 -11.49267 -11.40284 -11.07764 -10.87414 -10.67985 -10.48548 -10.43769 -10.09675 -9.99022 -9.49498 -9.41275 -9.34736 -8.71378 -8.57981 -7.52962 -6.07750 -4.05630 3.24247 3.28389 3.34191 3.36924 3.59021 3.91472 4.36416 4.39774 4.75506 4.79475 4.85471 5.16682 5.22281 5.25588 5.28332 5.30716 5.37504 5.54193 5.62505 5.67841 5.79740 5.84536 5.94848 5.95553 6.07565 6.09633 6.17683 6.19187 6.23068 6.27188 6.31866 6.37645 6.47868 6.62050 6.67238 6.76618 6.91221 6.97035 7.37874 7.61609 8.30387 8.48785 8.95825 9.03630 9.52983 11.05433 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.007085 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.431330 B = 3951.127115 C = 4441.678075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 C -0.128 4.128 4 C -0.170 4.170 5 C 0.544 3.456 6 O -0.532 6.532 7 N -0.560 5.560 8 C 0.213 3.787 9 C -0.521 4.521 10 H 0.077 0.923 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.871 3.129 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.267 1.267 17 C 0.080 3.920 18 C -0.175 4.175 19 C -0.207 4.207 20 C -0.091 4.091 21 C -0.130 4.130 22 C -0.111 4.111 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.969 -6.708 -2.621 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.185 4.185 4 C -0.191 4.191 5 C 0.332 3.668 6 O -0.410 6.410 7 N -0.289 5.289 8 C 0.092 3.908 9 C -0.559 4.559 10 H 0.095 0.905 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.698 3.302 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.192 1.192 17 C -0.026 4.026 18 C -0.213 4.213 19 C -0.246 4.246 20 C -0.091 4.091 21 C -0.187 4.187 22 C -0.168 4.168 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.213 -6.799 -2.833 16.008 hybrid contribution 0.542 -0.338 0.885 1.091 sum -13.671 -7.137 -1.948 15.544 Atomic orbital electron populations 1.21338 0.92055 1.01791 1.01793 1.21756 0.94331 0.91638 1.02944 1.21542 1.00955 0.93092 1.02874 1.22699 0.98270 1.03144 0.94995 1.19337 0.89054 0.78277 0.80141 1.90622 1.32776 1.53685 1.63870 1.47380 1.06627 1.48213 1.26680 1.19680 0.81312 0.97295 0.92477 1.21282 1.07129 1.06243 1.21263 0.90488 1.24828 0.96780 0.94754 0.96535 1.69891 1.20753 1.20351 1.42505 0.86930 0.80733 0.79884 0.82634 1.19968 1.21088 1.19186 1.21623 0.88675 1.02275 0.90026 1.23340 1.04171 0.91727 1.02059 1.23422 1.01281 0.99284 1.00646 1.21645 0.98016 0.98461 0.90990 1.21641 0.95288 1.00882 1.00889 1.21329 0.98518 0.97187 0.99752 0.92081 0.92083 0.92494 0.91274 0.92463 0.91013 0.86247 0.94670 0.95244 0.92634 0.85683 0.86659 0.88758 0.88926 0.89041 0.92655 0.93029 0.88995 0.92664 0.92207 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.79 37.16 0.33 -0.84 16 2 C -0.11 -1.46 1.56 -154.52 -0.24 -1.70 16 3 C -0.13 -2.02 8.39 37.16 0.31 -1.71 16 4 C -0.17 -2.68 4.22 -91.78 -0.39 -3.07 16 5 C 0.54 11.25 5.63 -10.99 -0.06 11.19 16 6 O -0.53 -13.06 13.96 5.55 0.08 -12.98 16 7 N -0.56 -11.59 2.76 -167.47 -0.46 -12.05 16 8 C 0.21 5.18 3.53 -5.19 -0.02 5.16 16 9 C -0.52 -14.61 9.74 -34.44 -0.34 -14.95 16 10 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 13 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 14 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 17 C 0.08 1.32 4.65 -67.93 -0.32 1.01 16 18 C -0.18 -2.83 9.72 -26.69 -0.26 -3.09 16 19 C -0.21 -2.98 10.13 -26.70 -0.27 -3.25 16 20 C -0.09 -1.31 2.69 -154.51 -0.42 -1.73 16 21 C -0.13 -2.16 7.86 37.16 0.29 -1.86 16 22 C -0.11 -1.24 8.88 37.16 0.33 -0.91 16 23 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 25 H 0.06 0.53 7.78 -51.93 -0.40 0.13 16 26 H 0.07 1.30 5.93 -51.93 -0.31 0.99 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.07 1.22 5.90 -51.93 -0.31 0.91 16 29 H 0.12 1.66 7.96 -51.92 -0.41 1.24 16 30 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 31 H 0.03 0.69 5.38 -51.93 -0.28 0.41 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.13 1.83 5.08 -51.93 -0.26 1.56 16 34 H 0.12 2.22 6.29 -51.93 -0.33 1.89 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.40 8.12 -51.93 -0.42 0.98 16 38 H 0.05 0.86 7.92 -51.93 -0.41 0.44 16 39 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.09 1.90 4.43 -51.93 -0.23 1.67 16 41 H 0.05 0.56 7.78 -51.93 -0.40 0.15 16 42 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 43 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -31.73 330.51 -7.51 -39.24 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.07 Total: 4.22 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.14 Total: -13.75 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.31 Total: -38.60 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.73 -7.51 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074233651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.837 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds