Wall clock time and date at job start Mon Mar 30 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00296 * 2 1 4 4 H 1.48492 * 109.47452 * 240.00273 * 3 2 1 5 5 H 1.48501 * 109.46714 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47118 * 119.99705 * 3 2 1 7 7 C 1.37878 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47179 * 184.99948 * 9 7 2 11 11 H 1.08999 * 109.87522 * 306.43034 * 10 9 7 12 12 C 1.54323 * 110.01099 * 67.52554 * 10 9 7 13 13 C 1.55165 * 102.94186 * 141.68367 * 12 10 9 14 14 C 1.55135 * 101.48588 * 324.33461 * 13 12 10 15 15 N 1.47021 * 109.88472 * 185.41428 * 10 9 7 16 16 C 1.34778 * 125.64740 * 61.45283 * 15 10 9 17 17 O 1.21278 * 120.00035 * 355.43050 * 16 15 10 18 18 C 1.50702 * 119.99728 * 175.43771 * 16 15 10 19 19 C 1.52999 * 109.47596 * 59.99828 * 18 16 15 20 20 C 1.53000 * 109.47199 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47099 * 299.99783 * 20 19 18 22 22 C 1.53007 * 109.47109 * 60.00027 * 21 20 19 23 23 C 1.53000 * 109.47118 * 299.99961 * 22 21 20 24 24 H 0.96992 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47218 * 65.00233 * 9 7 2 26 26 H 1.08995 * 109.47086 * 305.00196 * 9 7 2 27 27 H 1.08995 * 110.72508 * 260.04405 * 12 10 9 28 28 H 1.08998 * 110.71897 * 23.14577 * 12 10 9 29 29 H 1.08994 * 111.00688 * 82.57382 * 13 12 10 30 30 H 1.09000 * 111.00471 * 206.38884 * 13 12 10 31 31 H 1.09007 * 110.49702 * 278.45587 * 14 13 12 32 32 H 1.08997 * 110.34193 * 156.05835 * 14 13 12 33 33 H 1.08999 * 109.47117 * 299.99460 * 18 16 15 34 34 H 1.09007 * 109.46351 * 299.99767 * 19 18 16 35 35 H 1.08999 * 109.47188 * 59.99675 * 19 18 16 36 36 H 1.08992 * 109.47029 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.46814 * 59.99791 * 20 19 18 38 38 H 1.08999 * 109.46991 * 300.00169 * 21 20 19 39 39 H 1.08995 * 109.47243 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46865 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47078 * 60.00196 * 22 21 20 42 42 H 1.08999 * 109.47338 * 300.00075 * 23 22 21 43 43 H 1.08996 * 109.46779 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2404 -3.6593 0.1269 11 1 3.0046 -3.5805 -0.6463 12 6 2.9010 -3.6405 1.5215 13 6 2.9966 -5.1469 1.8810 14 6 1.6902 -5.6982 1.2518 15 7 1.5290 -4.9395 -0.0020 16 6 0.8390 -5.3491 -1.0848 17 8 0.6982 -4.6044 -2.0316 18 6 0.2422 -6.7326 -1.1190 19 6 -0.7521 -6.8878 0.0334 20 6 -1.3574 -8.2925 -0.0009 21 6 -2.0823 -8.5031 -1.3318 22 6 -1.0879 -8.3478 -2.4843 23 6 -0.4826 -6.9431 -2.4499 24 1 -0.4850 0.8400 -0.0004 25 1 0.6936 -2.5969 -0.9310 26 1 0.5586 -2.5189 0.8420 27 1 3.8932 -3.1921 1.4722 28 1 2.2744 -3.1093 2.2378 29 1 3.8759 -5.6022 1.4256 30 1 2.9997 -5.2913 2.9614 31 1 0.8429 -5.5206 1.9142 32 1 1.7911 -6.7628 1.0407 33 1 1.0355 -7.4731 -1.0166 34 1 -0.2355 -6.7382 0.9816 35 1 -1.5454 -6.1473 -0.0689 36 1 -2.0654 -8.4032 0.8203 37 1 -0.5638 -9.0327 0.1016 38 1 -2.8758 -7.7629 -1.4343 39 1 -2.5139 -9.5036 -1.3561 40 1 -1.6045 -8.4974 -3.4324 41 1 -0.2944 -9.0880 -2.3817 42 1 -1.2761 -6.2029 -2.5524 43 1 0.2261 -6.8327 -3.2706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084529656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:06 Heat of formation + Delta-G solvation = -66.952714 kcal Electronic energy + Delta-G solvation = -21167.170903 eV Core-core repulsion = 18210.708508 eV Total energy + Delta-G solvation = -2956.462394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07609 -37.96399 -36.57668 -33.15879 -31.80328 -30.72782 -30.45963 -29.87091 -26.09610 -24.33068 -22.69189 -22.56508 -21.60690 -20.36937 -19.70891 -18.23857 -16.71389 -16.34125 -15.66338 -15.09772 -14.82141 -14.40691 -14.20057 -14.03682 -13.43098 -13.10063 -13.02376 -12.82459 -12.30664 -12.24812 -12.13557 -11.94429 -11.85984 -11.26689 -11.14360 -11.07641 -10.88370 -10.75980 -10.64088 -10.57417 -10.37493 -10.27371 -10.05275 -9.89477 -9.45587 -9.28698 -8.81925 -8.24528 -7.86531 -5.91882 -3.93892 3.21507 3.37286 3.41695 3.43607 3.58069 4.51861 4.64221 4.68341 4.74291 4.94245 5.08651 5.19549 5.20888 5.28445 5.38148 5.42906 5.44037 5.47258 5.52056 5.62178 5.70906 5.80972 5.89115 5.96002 5.98377 6.07854 6.09044 6.16420 6.19460 6.23394 6.29888 6.36362 6.48281 6.55784 6.81774 6.96238 7.05458 7.76177 7.91561 8.14681 8.19442 8.48359 8.81964 9.13520 9.68348 11.19662 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.005087 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.815213 B = 5502.813523 C = 6091.960318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.017 3.983 10 C 0.139 3.861 11 H 0.061 0.939 12 C -0.113 4.113 13 C -0.139 4.139 14 C 0.101 3.899 15 N -0.614 5.614 16 C 0.524 3.476 17 O -0.528 6.528 18 C -0.100 4.100 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.100 4.100 24 H 0.260 0.740 25 H 0.034 0.966 26 H 0.017 0.983 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -18.735 2.781 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.021 4.021 10 C 0.037 3.963 11 H 0.079 0.921 12 C -0.151 4.151 13 C -0.177 4.177 14 C -0.022 4.022 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.404 6.404 18 C -0.121 4.121 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.138 4.138 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.072 -18.231 2.188 18.362 hybrid contribution 0.472 0.996 0.099 1.107 sum 0.400 -17.235 2.287 17.391 Atomic orbital electron populations 1.69972 1.06050 1.26524 1.50731 1.24979 0.94780 0.99069 0.95444 0.86680 0.79572 0.83328 0.78529 1.20279 1.21359 1.20299 1.21069 0.92764 0.90794 1.50728 0.92813 1.19433 0.93954 0.90297 0.98411 1.21905 0.95070 0.83451 0.95872 0.92137 1.22586 1.01355 0.94090 0.97078 1.22872 0.96816 0.97643 1.00350 1.22377 0.97821 0.95500 0.86546 1.48718 1.52262 1.20010 1.13808 1.20183 0.78210 0.88698 0.81718 1.90728 1.58327 1.55773 1.35587 1.21272 0.98479 0.94738 0.97610 1.21719 0.98684 0.97615 0.97802 1.21511 0.99682 0.96650 0.97425 1.21566 0.98292 1.01262 0.94813 1.21551 0.98579 0.97078 0.98326 1.21341 1.00214 0.96578 0.95643 0.93053 0.94811 0.96458 0.90870 0.90182 0.91295 0.90602 0.91554 0.91433 0.89374 0.90753 0.91258 0.91873 0.92057 0.91841 0.92277 0.91903 0.92199 0.91055 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.85 13.29 55.43 0.74 -27.12 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.86 8.66 -34.44 -0.30 -15.16 16 8 H 0.05 1.49 7.75 -52.49 -0.41 1.08 16 9 C 0.02 0.46 4.45 -27.88 -0.12 0.33 16 10 C 0.14 2.99 2.86 -66.95 -0.19 2.80 16 11 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.11 -1.99 6.04 -24.89 -0.15 -2.14 16 13 C -0.14 -1.81 7.10 -24.46 -0.17 -1.98 16 14 C 0.10 1.38 5.10 -2.41 -0.01 1.37 16 15 N -0.61 -11.37 3.06 -162.87 -0.50 -11.87 16 16 C 0.52 10.11 7.05 -10.98 -0.08 10.03 16 17 O -0.53 -12.78 14.77 5.56 0.08 -12.70 16 18 C -0.10 -1.39 1.87 -91.77 -0.17 -1.56 16 19 C -0.12 -1.47 4.95 -26.73 -0.13 -1.60 16 20 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 22 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 23 C -0.10 -1.35 4.49 -26.73 -0.12 -1.47 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.03 1.05 6.54 -51.93 -0.34 0.71 16 26 H 0.02 0.50 8.02 -51.93 -0.42 0.08 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.51 7.77 -51.93 -0.40 1.11 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.88 7.28 -51.93 -0.38 0.51 16 32 H 0.07 0.74 7.07 -51.93 -0.37 0.37 16 33 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 34 H 0.07 0.85 4.77 -51.93 -0.25 0.61 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -33.70 329.01 -9.37 -43.07 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.60 Total: -1.81 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.02 Total: -11.68 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.24 Total: -38.99 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.70 -9.37 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084529656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.883 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds