Wall clock time and date at job start Mon Mar 30 2020 07:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00296 * 2 1 4 4 H 1.48492 * 109.47452 * 240.00273 * 3 2 1 5 5 H 1.48501 * 109.46714 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47118 * 119.99705 * 3 2 1 7 7 C 1.37878 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47179 * 184.99948 * 9 7 2 11 11 H 1.08999 * 109.87522 * 306.43034 * 10 9 7 12 12 C 1.54323 * 110.01099 * 67.52554 * 10 9 7 13 13 C 1.55165 * 102.94186 * 141.68367 * 12 10 9 14 14 C 1.55135 * 101.48588 * 324.33461 * 13 12 10 15 15 N 1.47021 * 109.88472 * 185.41428 * 10 9 7 16 16 C 1.34778 * 125.64740 * 61.45283 * 15 10 9 17 17 O 1.21278 * 120.00035 * 355.43050 * 16 15 10 18 18 C 1.50702 * 119.99728 * 175.43771 * 16 15 10 19 19 C 1.52999 * 109.47596 * 59.99828 * 18 16 15 20 20 C 1.53000 * 109.47199 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47099 * 299.99783 * 20 19 18 22 22 C 1.53007 * 109.47109 * 60.00027 * 21 20 19 23 23 C 1.53000 * 109.47118 * 299.99961 * 22 21 20 24 24 H 0.96992 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47218 * 65.00233 * 9 7 2 26 26 H 1.08995 * 109.47086 * 305.00196 * 9 7 2 27 27 H 1.08995 * 110.72508 * 260.04405 * 12 10 9 28 28 H 1.08998 * 110.71897 * 23.14577 * 12 10 9 29 29 H 1.08994 * 111.00688 * 82.57382 * 13 12 10 30 30 H 1.09000 * 111.00471 * 206.38884 * 13 12 10 31 31 H 1.09007 * 110.49702 * 278.45587 * 14 13 12 32 32 H 1.08997 * 110.34193 * 156.05835 * 14 13 12 33 33 H 1.08999 * 109.47117 * 299.99460 * 18 16 15 34 34 H 1.09007 * 109.46351 * 299.99767 * 19 18 16 35 35 H 1.08999 * 109.47188 * 59.99675 * 19 18 16 36 36 H 1.08992 * 109.47029 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.46814 * 59.99791 * 20 19 18 38 38 H 1.08999 * 109.46991 * 300.00169 * 21 20 19 39 39 H 1.08995 * 109.47243 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46865 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47078 * 60.00196 * 22 21 20 42 42 H 1.08999 * 109.47338 * 300.00075 * 23 22 21 43 43 H 1.08996 * 109.46779 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2404 -3.6593 0.1269 11 1 3.0046 -3.5805 -0.6463 12 6 2.9010 -3.6405 1.5215 13 6 2.9966 -5.1469 1.8810 14 6 1.6902 -5.6982 1.2518 15 7 1.5290 -4.9395 -0.0020 16 6 0.8390 -5.3491 -1.0848 17 8 0.6982 -4.6044 -2.0316 18 6 0.2422 -6.7326 -1.1190 19 6 -0.7521 -6.8878 0.0334 20 6 -1.3574 -8.2925 -0.0009 21 6 -2.0823 -8.5031 -1.3318 22 6 -1.0879 -8.3478 -2.4843 23 6 -0.4826 -6.9431 -2.4499 24 1 -0.4850 0.8400 -0.0004 25 1 0.6936 -2.5969 -0.9310 26 1 0.5586 -2.5189 0.8420 27 1 3.8932 -3.1921 1.4722 28 1 2.2744 -3.1093 2.2378 29 1 3.8759 -5.6022 1.4256 30 1 2.9997 -5.2913 2.9614 31 1 0.8429 -5.5206 1.9142 32 1 1.7911 -6.7628 1.0407 33 1 1.0355 -7.4731 -1.0166 34 1 -0.2355 -6.7382 0.9816 35 1 -1.5454 -6.1473 -0.0689 36 1 -2.0654 -8.4032 0.8203 37 1 -0.5638 -9.0327 0.1016 38 1 -2.8758 -7.7629 -1.4343 39 1 -2.5139 -9.5036 -1.3561 40 1 -1.6045 -8.4974 -3.4324 41 1 -0.2944 -9.0880 -2.3817 42 1 -1.2761 -6.2029 -2.5524 43 1 0.2261 -6.8327 -3.2706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084529656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:05 Heat of formation + Delta-G solvation = -88.031504 kcal Electronic energy + Delta-G solvation = -21168.084948 eV Core-core repulsion = 18210.708508 eV Total energy + Delta-G solvation = -2957.376439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47452 -39.15694 -38.01839 -35.29595 -33.23863 -32.01234 -31.66082 -31.26659 -27.93227 -25.77171 -24.40031 -23.49818 -22.92697 -21.69608 -20.74004 -19.76774 -18.67142 -17.86434 -17.16398 -16.64409 -16.17296 -16.04843 -15.27058 -15.03552 -14.70847 -14.65152 -14.38541 -14.25301 -13.95999 -13.68700 -13.45357 -13.16460 -13.04827 -12.91351 -12.77995 -12.57625 -12.24586 -12.11838 -12.07487 -11.85933 -11.55301 -11.51705 -11.40808 -11.35752 -11.23624 -10.94661 -10.62279 -10.41350 -9.48114 -8.21478 -6.33500 1.35738 1.40947 1.48285 1.71581 2.15203 2.40505 3.11461 3.49755 3.70227 3.77785 3.79942 3.95527 4.13916 4.26702 4.29616 4.32227 4.38896 4.43104 4.54537 4.57766 4.60516 4.70159 4.74340 4.88266 4.97902 5.01781 5.10107 5.14096 5.19505 5.22717 5.25958 5.27494 5.28850 5.34904 5.41411 5.46455 5.50132 5.57694 5.67244 5.87591 6.17753 6.72573 6.83842 7.31469 7.35406 8.91156 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.005087 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.815213 B = 5502.813523 C = 6091.960318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.140 3.860 11 H 0.039 0.961 12 C -0.110 4.110 13 C -0.120 4.120 14 C 0.092 3.908 15 N -0.617 5.617 16 C 0.509 3.491 17 O -0.595 6.595 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.101 4.101 24 H 0.262 0.738 25 H -0.022 1.022 26 H -0.013 1.013 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 -21.416 4.784 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.571 4.571 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.037 3.963 11 H 0.057 0.943 12 C -0.148 4.148 13 C -0.157 4.157 14 C -0.029 4.029 15 N -0.350 5.350 16 C 0.299 3.701 17 O -0.476 6.476 18 C -0.108 4.108 19 C -0.156 4.156 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.147 4.147 23 C -0.139 4.139 24 H 0.071 0.929 25 H -0.003 1.003 26 H 0.006 0.994 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.673 -20.957 4.236 21.446 hybrid contribution -0.118 1.867 -0.571 1.956 sum 1.555 -19.090 3.665 19.501 Atomic orbital electron populations 1.70145 1.08174 1.27731 1.51771 1.26051 0.95707 1.03636 0.94651 0.85441 0.78203 0.77655 0.79389 1.19614 1.20932 1.18057 1.21491 0.93405 0.91730 1.50483 0.91772 1.19184 0.94251 0.93146 0.94165 1.21611 0.93346 0.83231 0.98125 0.94267 1.22482 1.00614 0.98109 0.93601 1.22885 0.97002 0.93139 1.02698 1.22777 0.98634 0.97250 0.84214 1.48856 1.51331 1.19299 1.15470 1.21392 0.77385 0.90447 0.80871 1.90690 1.60643 1.58081 1.38145 1.21313 0.99528 0.91451 0.98479 1.21737 0.97434 0.99055 0.97333 1.21506 1.00561 0.94722 0.97703 1.21602 0.97728 1.02177 0.94586 1.21521 0.99306 0.94621 0.99214 1.21339 0.98977 0.98333 0.95229 0.92922 1.00333 0.99419 0.90116 0.91997 0.89323 0.87020 0.91064 0.87155 0.85851 0.89494 0.94535 0.90506 0.89464 0.93555 0.89732 0.91315 0.89901 0.94521 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.27 13.29 21.45 0.28 -60.98 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.97 46.36 29.54 68.60 2.03 48.38 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.53 -32.12 8.66 25.60 0.22 -31.90 16 8 H 0.06 3.63 7.75 -2.91 -0.02 3.61 16 9 C 0.03 1.78 4.45 29.85 0.13 1.92 16 10 C 0.14 6.30 2.86 45.34 0.13 6.43 16 11 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 12 C -0.11 -3.78 6.04 31.79 0.19 -3.59 16 13 C -0.12 -2.66 7.10 32.07 0.23 -2.43 16 14 C 0.09 2.26 5.10 86.93 0.44 2.71 16 15 N -0.62 -23.20 3.06 -787.60 -2.41 -25.62 16 16 C 0.51 20.55 7.05 87.66 0.62 21.16 16 17 O -0.59 -31.49 14.77 -3.02 -0.04 -31.54 16 18 C -0.09 -2.36 1.87 -11.54 -0.02 -2.38 16 19 C -0.12 -2.71 4.95 30.59 0.15 -2.56 16 20 C -0.11 -1.66 5.92 30.59 0.18 -1.47 16 21 C -0.12 -2.04 5.92 30.60 0.18 -1.86 16 22 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 23 C -0.10 -2.81 4.49 30.60 0.14 -2.67 16 24 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 25 H -0.02 -1.50 6.54 -2.39 -0.02 -1.51 16 26 H -0.01 -0.79 8.02 -2.39 -0.02 -0.81 16 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 2.35 7.77 -2.39 -0.02 2.33 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.71 7.28 -2.38 -0.02 1.69 16 32 H 0.11 1.83 7.07 -2.39 -0.02 1.81 16 33 H 0.12 2.52 7.95 -2.39 -0.02 2.50 16 34 H 0.09 1.76 4.77 -2.38 -0.01 1.75 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 43 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -82.49 329.01 4.05 -78.44 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.96 Total: 9.52 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.24 Total: -18.22 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.13 Total: -86.60 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.04 Total: -31.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -82.49 4.05 -78.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084529656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.588 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds