Wall clock time and date at job start Mon Mar 30 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00390 * 2 1 4 4 H 1.48494 * 109.47499 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46584 * 299.99564 * 3 2 1 6 6 H 1.48499 * 109.47114 * 59.99263 * 3 2 1 7 7 C 1.37877 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00537 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.52998 * 115.55218 * 180.25053 * 9 7 2 11 11 N 1.46903 * 109.47196 * 282.26454 * 10 9 7 12 12 C 1.47098 * 110.99690 * 307.45913 * 11 10 9 13 13 C 1.53052 * 109.48307 * 178.10150 * 12 11 10 14 14 O 1.43103 * 109.41800 * 56.37142 * 13 12 11 15 15 C 1.42866 * 113.44641 * 301.45950 * 14 13 12 16 16 H 1.08999 * 109.44675 * 299.59931 * 15 14 13 17 17 C 1.52885 * 110.18143 * 179.20384 * 15 14 13 18 18 C 1.53083 * 109.27425 * 179.67398 * 17 15 14 19 19 C 1.53050 * 109.62456 * 59.74368 * 18 17 15 20 20 C 1.53078 * 109.70962 * 300.53914 * 19 18 17 21 21 C 1.46873 * 110.99788 * 184.16857 * 11 10 9 22 22 H 1.08999 * 109.41271 * 62.91810 * 21 11 10 23 23 C 1.52998 * 117.51825 * 325.96003 * 9 7 2 24 24 C 1.52998 * 60.00091 * 107.47745 * 23 9 7 25 25 H 0.97000 * 119.99727 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47075 * 162.25987 * 10 9 7 27 27 H 1.09004 * 109.47037 * 42.26123 * 10 9 7 28 28 H 1.09005 * 109.47331 * 298.10195 * 12 11 10 29 29 H 1.09002 * 109.47447 * 58.09831 * 12 11 10 30 30 H 1.08996 * 109.47248 * 176.33587 * 13 12 11 31 31 H 1.09002 * 109.46247 * 296.32569 * 13 12 11 32 32 H 1.09002 * 109.51131 * 299.62805 * 17 15 14 33 33 H 1.09002 * 109.50869 * 59.72068 * 17 15 14 34 34 H 1.09008 * 109.43370 * 179.85566 * 18 17 15 35 35 H 1.09000 * 109.43638 * 299.72571 * 18 17 15 36 36 H 1.09004 * 109.42435 * 180.46424 * 19 18 17 37 37 H 1.09008 * 109.42576 * 60.61304 * 19 18 17 38 38 H 1.08997 * 109.50812 * 299.84414 * 20 19 18 39 39 H 1.08999 * 109.51127 * 179.69778 * 20 19 18 40 40 H 1.08999 * 117.49318 * 214.96481 * 23 9 7 41 41 H 1.08998 * 117.50223 * 359.97438 * 23 9 7 42 42 H 1.09008 * 117.49503 * 252.50844 * 24 23 9 43 43 H 1.08995 * 117.50158 * 107.49498 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1164 -3.7609 0.0072 11 7 2.6417 -4.0015 -1.3435 12 6 1.5571 -4.0088 -2.3372 13 6 2.1466 -4.2146 -3.7346 14 8 2.9133 -5.4227 -3.7544 15 6 3.9793 -5.4351 -2.8033 16 1 4.6655 -4.6155 -3.0166 17 6 4.7343 -6.7626 -2.8744 18 6 5.8753 -6.7504 -1.8540 19 6 5.3047 -6.5560 -0.4472 20 6 4.5373 -5.2332 -0.3795 21 6 3.3972 -5.2599 -1.3978 22 1 2.7304 -6.0927 -1.1747 23 6 -0.0765 -2.5490 0.7596 24 6 -0.0695 -2.5524 -0.7704 25 1 -0.4850 0.8401 -0.0004 26 1 1.5135 -4.6133 0.3198 27 1 2.9463 -3.6286 0.7015 28 1 0.8638 -4.8194 -2.1125 29 1 1.0267 -3.0572 -2.3032 30 1 1.3388 -4.2851 -4.4629 31 1 2.7893 -3.3708 -3.9855 32 1 4.0521 -7.5820 -2.6479 33 1 5.1431 -6.8957 -3.8761 34 1 6.4139 -7.6969 -1.9008 35 1 6.5589 -5.9331 -2.0841 36 1 6.1204 -6.5395 0.2757 37 1 4.6298 -7.3793 -0.2128 38 1 5.2120 -4.4088 -0.6099 39 1 4.1279 -5.1007 0.6219 40 1 -0.3332 -3.4807 1.2637 41 1 -0.4049 -1.6378 1.2595 42 1 -0.3935 -1.6433 -1.2772 43 1 -0.3218 -3.4862 -1.2728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:29 Heat of formation + Delta-G solvation = -10.148896 kcal Electronic energy + Delta-G solvation = -21807.381005 eV Core-core repulsion = 18853.381809 eV Total energy + Delta-G solvation = -2953.999196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04664 -37.23883 -36.33304 -34.38574 -31.48278 -30.19638 -29.99456 -28.00778 -25.69427 -24.24090 -23.25298 -21.94763 -20.83397 -19.86362 -19.76855 -18.86020 -16.47462 -16.01648 -15.47309 -15.06368 -14.85709 -14.71037 -14.42005 -13.69798 -13.44837 -13.37310 -13.17801 -12.91675 -12.38025 -12.20240 -11.76321 -11.46820 -11.23603 -11.08526 -10.98672 -10.88389 -10.72257 -10.56992 -10.46114 -10.30926 -10.09899 -9.96051 -9.91278 -9.44602 -9.02411 -8.83886 -8.14366 -8.06549 -7.60222 -5.93614 -3.97106 3.28972 3.37726 3.42457 3.96602 4.29272 4.42223 4.77714 4.93390 5.04953 5.16292 5.26131 5.30484 5.45295 5.52884 5.54639 5.60740 5.69169 5.72649 5.79798 5.91917 6.00938 6.05955 6.09388 6.15387 6.17949 6.25634 6.28345 6.31823 6.40873 6.55789 6.57369 6.59362 6.73041 6.99195 7.23620 7.32992 7.47518 7.70716 7.73439 7.82885 8.04509 8.21629 8.54174 8.99503 9.57383 11.02649 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.005961 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.722123 B = 4696.327857 C = 4904.763263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.457 4.457 8 H 0.063 0.937 9 C 0.022 3.978 10 C 0.101 3.899 11 N -0.515 5.515 12 C 0.010 3.990 13 C 0.063 3.937 14 O -0.391 6.391 15 C 0.100 3.900 16 H 0.063 0.937 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.112 4.112 21 C 0.054 3.946 22 H 0.037 0.963 23 C -0.190 4.190 24 C -0.196 4.196 25 H 0.257 0.743 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -11.247 -3.853 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.022 3.978 10 C -0.026 4.026 11 N -0.239 5.239 12 C -0.118 4.118 13 C -0.014 4.014 14 O -0.310 6.310 15 C 0.042 3.958 16 H 0.081 0.919 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.055 4.055 22 H 0.055 0.945 23 C -0.228 4.228 24 C -0.234 4.234 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.142 0.858 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.673 -10.866 -4.091 13.917 hybrid contribution -0.353 0.466 0.420 0.719 sum 7.320 -10.401 -3.671 13.238 Atomic orbital electron populations 1.70024 1.05736 1.25749 1.50709 1.25019 0.94958 0.99186 0.95421 0.86476 0.80159 0.83618 0.77406 1.19752 1.21162 1.21227 1.20611 0.92772 0.88403 1.47668 0.91907 1.18985 0.85576 0.92481 1.00794 1.21676 0.97133 0.95613 0.88173 1.62198 1.24598 1.30819 1.06269 1.23349 0.93373 1.03761 0.91306 1.22762 0.94812 0.86722 0.97108 1.87873 1.45328 1.39344 1.58497 1.22060 0.88629 0.97638 0.87502 0.91860 1.21478 0.97081 0.96561 0.99628 1.21510 0.97275 1.01845 0.94626 1.21583 0.99611 0.97867 0.96671 1.21571 0.96900 0.97445 0.99078 1.22224 0.95678 0.91897 0.95674 0.94538 1.22916 1.05522 0.99700 0.94677 1.23025 1.06198 0.99809 0.94392 0.93294 0.97306 0.91073 0.95496 0.85763 0.89115 0.92415 0.91516 0.91302 0.91666 0.91667 0.91753 0.92196 0.90860 0.91306 0.94304 0.87104 0.87181 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.26 8.59 55.43 0.48 -23.79 16 2 C 0.05 1.47 5.28 -17.82 -0.09 1.37 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.46 -12.28 9.20 -34.44 -0.32 -12.60 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.02 0.54 1.90 -155.66 -0.30 0.25 16 10 C 0.10 2.12 4.55 -3.82 -0.02 2.10 16 11 N -0.51 -9.97 4.68 -226.46 -1.06 -11.03 16 12 C 0.01 0.18 4.07 -3.69 -0.02 0.17 16 13 C 0.06 1.04 7.00 37.18 0.26 1.30 16 14 O -0.39 -6.55 10.51 -35.23 -0.37 -6.92 16 15 C 0.10 1.52 2.63 -26.72 -0.07 1.45 16 16 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.11 -1.32 5.61 -26.75 -0.15 -1.47 16 18 C -0.11 -1.19 5.93 -26.66 -0.16 -1.35 16 19 C -0.12 -1.33 5.92 -26.67 -0.16 -1.49 16 20 C -0.11 -1.59 4.94 -26.75 -0.13 -1.73 16 21 C 0.05 0.89 1.78 -67.72 -0.12 0.77 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.19 -4.70 9.31 -26.73 -0.25 -4.95 16 24 C -0.20 -4.74 6.71 -26.73 -0.18 -4.92 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.01 0.18 7.97 -51.93 -0.41 -0.23 16 27 H 0.07 1.48 6.54 -51.93 -0.34 1.14 16 28 H 0.03 0.52 7.56 -51.93 -0.39 0.12 16 29 H 0.12 2.64 4.60 -51.93 -0.24 2.40 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 40 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.11 3.02 6.26 -51.93 -0.33 2.70 16 42 H 0.11 2.94 6.31 -51.92 -0.33 2.61 16 43 H 0.05 1.04 5.93 -51.93 -0.31 0.73 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -27.64 314.91 -10.22 -37.86 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.30 Total: 4.17 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -1.70 Total: -21.09 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.58 Total: -34.82 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.37 Total: -6.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.64 -10.22 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.712 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds