Wall clock time and date at job start Mon Mar 30 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00390 * 2 1 4 4 H 1.48494 * 109.47499 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46584 * 299.99564 * 3 2 1 6 6 H 1.48499 * 109.47114 * 59.99263 * 3 2 1 7 7 C 1.37877 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00537 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.52998 * 115.55218 * 180.25053 * 9 7 2 11 11 N 1.46903 * 109.47196 * 282.26454 * 10 9 7 12 12 C 1.47098 * 110.99690 * 307.45913 * 11 10 9 13 13 C 1.53052 * 109.48307 * 178.10150 * 12 11 10 14 14 O 1.43103 * 109.41800 * 56.37142 * 13 12 11 15 15 C 1.42866 * 113.44641 * 301.45950 * 14 13 12 16 16 H 1.08999 * 109.44675 * 299.59931 * 15 14 13 17 17 C 1.52885 * 110.18143 * 179.20384 * 15 14 13 18 18 C 1.53083 * 109.27425 * 179.67398 * 17 15 14 19 19 C 1.53050 * 109.62456 * 59.74368 * 18 17 15 20 20 C 1.53078 * 109.70962 * 300.53914 * 19 18 17 21 21 C 1.46873 * 110.99788 * 184.16857 * 11 10 9 22 22 H 1.08999 * 109.41271 * 62.91810 * 21 11 10 23 23 C 1.52998 * 117.51825 * 325.96003 * 9 7 2 24 24 C 1.52998 * 60.00091 * 107.47745 * 23 9 7 25 25 H 0.97000 * 119.99727 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47075 * 162.25987 * 10 9 7 27 27 H 1.09004 * 109.47037 * 42.26123 * 10 9 7 28 28 H 1.09005 * 109.47331 * 298.10195 * 12 11 10 29 29 H 1.09002 * 109.47447 * 58.09831 * 12 11 10 30 30 H 1.08996 * 109.47248 * 176.33587 * 13 12 11 31 31 H 1.09002 * 109.46247 * 296.32569 * 13 12 11 32 32 H 1.09002 * 109.51131 * 299.62805 * 17 15 14 33 33 H 1.09002 * 109.50869 * 59.72068 * 17 15 14 34 34 H 1.09008 * 109.43370 * 179.85566 * 18 17 15 35 35 H 1.09000 * 109.43638 * 299.72571 * 18 17 15 36 36 H 1.09004 * 109.42435 * 180.46424 * 19 18 17 37 37 H 1.09008 * 109.42576 * 60.61304 * 19 18 17 38 38 H 1.08997 * 109.50812 * 299.84414 * 20 19 18 39 39 H 1.08999 * 109.51127 * 179.69778 * 20 19 18 40 40 H 1.08999 * 117.49318 * 214.96481 * 23 9 7 41 41 H 1.08998 * 117.50223 * 359.97438 * 23 9 7 42 42 H 1.09008 * 117.49503 * 252.50844 * 24 23 9 43 43 H 1.08995 * 117.50158 * 107.49498 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1164 -3.7609 0.0072 11 7 2.6417 -4.0015 -1.3435 12 6 1.5571 -4.0088 -2.3372 13 6 2.1466 -4.2146 -3.7346 14 8 2.9133 -5.4227 -3.7544 15 6 3.9793 -5.4351 -2.8033 16 1 4.6655 -4.6155 -3.0166 17 6 4.7343 -6.7626 -2.8744 18 6 5.8753 -6.7504 -1.8540 19 6 5.3047 -6.5560 -0.4472 20 6 4.5373 -5.2332 -0.3795 21 6 3.3972 -5.2599 -1.3978 22 1 2.7304 -6.0927 -1.1747 23 6 -0.0765 -2.5490 0.7596 24 6 -0.0695 -2.5524 -0.7704 25 1 -0.4850 0.8401 -0.0004 26 1 1.5135 -4.6133 0.3198 27 1 2.9463 -3.6286 0.7015 28 1 0.8638 -4.8194 -2.1125 29 1 1.0267 -3.0572 -2.3032 30 1 1.3388 -4.2851 -4.4629 31 1 2.7893 -3.3708 -3.9855 32 1 4.0521 -7.5820 -2.6479 33 1 5.1431 -6.8957 -3.8761 34 1 6.4139 -7.6969 -1.9008 35 1 6.5589 -5.9331 -2.0841 36 1 6.1204 -6.5395 0.2757 37 1 4.6298 -7.3793 -0.2128 38 1 5.2120 -4.4088 -0.6099 39 1 4.1279 -5.1007 0.6219 40 1 -0.3332 -3.4807 1.2637 41 1 -0.4049 -1.6378 1.2595 42 1 -0.3935 -1.6433 -1.2772 43 1 -0.3218 -3.4862 -1.2728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:29 Heat of formation + Delta-G solvation = -25.924686 kcal Electronic energy + Delta-G solvation = -21808.065094 eV Core-core repulsion = 18853.381809 eV Total energy + Delta-G solvation = -2954.683285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37918 -38.95210 -37.48272 -35.96824 -33.48519 -31.44858 -31.08736 -29.53509 -27.64328 -25.73264 -24.60037 -23.23770 -22.47184 -21.26572 -20.91285 -20.73887 -18.16833 -17.55507 -16.92390 -16.78301 -16.18828 -16.13320 -15.69051 -15.41384 -14.82352 -14.75367 -14.47498 -14.15789 -13.95496 -13.52706 -13.15794 -13.03206 -12.94907 -12.65327 -12.42568 -12.33704 -12.24504 -12.12576 -11.95064 -11.78047 -11.51653 -11.44225 -11.20174 -11.17621 -10.86448 -10.43710 -10.04685 -10.01628 -9.14764 -7.99727 -6.09517 1.40292 1.43804 1.54600 2.44152 2.74606 2.82872 3.13993 3.67767 3.84802 3.97115 4.03286 4.08910 4.17733 4.25017 4.28924 4.32396 4.43649 4.47849 4.51271 4.53967 4.62582 4.73398 4.77110 4.82349 4.91477 4.94139 4.98966 5.08710 5.10683 5.20449 5.23214 5.25491 5.32732 5.33271 5.44508 5.51705 5.64269 5.94287 6.12557 6.15776 6.24119 6.35401 6.49172 6.91684 7.47165 8.94583 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.005961 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.722123 B = 4696.327857 C = 4904.763263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.477 4.477 8 H 0.054 0.946 9 C 0.016 3.984 10 C 0.112 3.888 11 N -0.528 5.528 12 C 0.013 3.987 13 C 0.068 3.932 14 O -0.397 6.397 15 C 0.097 3.903 16 H 0.056 0.944 17 C -0.104 4.104 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.110 4.110 21 C 0.055 3.945 22 H 0.029 0.971 23 C -0.196 4.196 24 C -0.182 4.182 25 H 0.256 0.744 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -12.604 -4.363 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.015 3.985 10 C -0.015 4.015 11 N -0.252 5.252 12 C -0.115 4.115 13 C -0.009 4.009 14 O -0.316 6.316 15 C 0.039 3.961 16 H 0.074 0.926 17 C -0.142 4.142 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.053 4.053 22 H 0.047 0.953 23 C -0.234 4.234 24 C -0.220 4.220 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.279 -12.234 -4.603 16.030 hybrid contribution -0.872 0.894 0.581 1.377 sum 8.407 -11.340 -4.022 14.679 Atomic orbital electron populations 1.70164 1.06726 1.26268 1.50952 1.25682 0.95738 1.02039 0.95200 0.85546 0.79050 0.79963 0.77292 1.19435 1.20959 1.20937 1.20824 0.92562 0.89874 1.48152 0.92809 1.19095 0.85830 0.93216 1.00374 1.21454 0.96533 0.94032 0.89448 1.62174 1.24718 1.33017 1.05283 1.23217 0.93380 1.02102 0.92780 1.22740 0.95385 0.86780 0.95990 1.87878 1.45665 1.39158 1.58898 1.22251 0.88189 0.99420 0.86276 0.92625 1.21505 0.97289 0.94389 1.01036 1.21520 0.96629 1.03406 0.93201 1.21567 0.99842 0.95823 0.97945 1.21570 0.96249 0.99235 0.97746 1.22337 0.95760 0.89914 0.97324 0.95297 1.22832 1.06220 0.99319 0.95045 1.22825 1.06006 0.99403 0.93738 0.93415 0.97052 0.91129 0.95890 0.88325 0.86870 0.92850 0.91466 0.90110 0.89002 0.91417 0.89945 0.91784 0.91735 0.92277 0.92424 0.89793 0.89889 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.54 8.59 21.45 0.18 -50.36 16 2 C 0.01 0.65 5.28 84.65 0.45 1.10 16 3 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.48 -26.01 9.20 25.60 0.24 -25.78 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.02 0.77 1.90 -52.93 -0.10 0.67 16 10 C 0.11 4.74 4.55 86.30 0.39 5.13 16 11 N -0.53 -20.34 4.68 -870.38 -4.07 -24.41 16 12 C 0.01 0.49 4.07 86.28 0.35 0.84 16 13 C 0.07 2.18 7.00 72.00 0.50 2.68 16 14 O -0.40 -12.66 10.51 -148.98 -1.57 -14.22 16 15 C 0.10 2.78 2.63 30.60 0.08 2.86 16 16 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 17 C -0.10 -2.23 5.61 30.58 0.17 -2.06 16 18 C -0.11 -1.90 5.93 30.64 0.18 -1.71 16 19 C -0.11 -2.21 5.92 30.64 0.18 -2.03 16 20 C -0.11 -2.99 4.94 30.58 0.15 -2.83 16 21 C 0.06 1.75 1.78 44.93 0.08 1.83 16 22 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 23 C -0.20 -9.82 9.31 30.59 0.28 -9.53 16 24 C -0.18 -8.91 6.71 30.59 0.21 -8.70 16 25 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.01 0.47 7.97 -2.39 -0.02 0.45 16 27 H 0.07 2.95 6.54 -2.38 -0.02 2.93 16 28 H 0.02 0.87 7.56 -2.38 -0.02 0.85 16 29 H 0.10 4.24 4.60 -2.39 -0.01 4.23 16 30 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.70 6.51 -2.39 -0.02 1.68 16 40 H 0.06 2.62 8.10 -2.39 -0.02 2.60 16 41 H 0.08 4.69 6.26 -2.39 -0.01 4.68 16 42 H 0.08 4.55 6.31 -2.38 -0.02 4.53 16 43 H 0.07 2.94 5.93 -2.39 -0.01 2.92 16 Total: -1.00 -59.22 314.91 0.71 -58.51 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.97 Total: 22.32 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.17 Total: -37.54 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -3.88 Total: -74.76 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.57 Total: -14.22 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.22 0.71 -58.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.586 kcal (2) G-P(sol) polarization free energy of solvation -59.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds