Wall clock time and date at job start Mon Mar 30 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47302 * 274.98588 * 3 2 1 5 5 H 1.48502 * 109.47262 * 34.98717 * 3 2 1 6 6 H 1.48507 * 109.47016 * 154.98893 * 3 2 1 7 7 C 1.37871 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00351 * 187.18713 * 7 2 1 9 9 C 1.50701 * 119.99844 * 7.18329 * 7 2 1 10 10 C 1.53000 * 115.55167 * 177.06006 * 9 7 2 11 11 N 1.46895 * 109.46884 * 34.33386 * 10 9 7 12 12 C 1.47025 * 111.00194 * 46.62671 * 11 10 9 13 13 C 1.53076 * 109.37604 * 182.36658 * 12 11 10 14 14 O 1.43064 * 109.35248 * 303.45628 * 13 12 11 15 15 C 1.42923 * 113.60656 * 58.34294 * 14 13 12 16 16 H 1.09001 * 109.37924 * 60.68616 * 15 14 13 17 17 C 1.52794 * 109.55580 * 180.56484 * 15 14 13 18 18 C 1.52991 * 109.66135 * 60.60268 * 17 15 14 19 19 C 1.53033 * 109.33384 * 59.91500 * 18 17 15 20 20 C 1.52235 * 109.49471 * 299.87046 * 19 18 17 21 21 C 1.47208 * 111.00271 * 169.99827 * 11 10 9 22 22 H 1.09006 * 109.63741 * 57.24812 * 21 11 10 23 23 C 1.53004 * 117.52131 * 322.76667 * 9 7 2 24 24 C 1.52999 * 60.00068 * 107.47895 * 23 9 7 25 25 H 0.97008 * 119.99891 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47501 * 274.32962 * 10 9 7 27 27 H 1.09002 * 109.47024 * 154.33192 * 10 9 7 28 28 H 1.09004 * 109.48769 * 302.33463 * 12 11 10 29 29 H 1.09002 * 109.48723 * 62.39412 * 12 11 10 30 30 H 1.09005 * 109.48653 * 183.49454 * 13 12 11 31 31 H 1.08995 * 109.50856 * 63.43547 * 13 12 11 32 32 H 1.08997 * 109.44045 * 180.66124 * 17 15 14 33 33 H 1.09001 * 109.43897 * 300.54734 * 17 15 14 34 34 H 1.09001 * 109.49495 * 179.87129 * 18 17 15 35 35 H 1.09002 * 109.49417 * 299.92916 * 18 17 15 36 36 H 1.08998 * 109.48536 * 59.66469 * 19 18 17 37 37 H 1.08996 * 109.48651 * 179.69964 * 19 18 17 38 38 H 1.08996 * 108.96350 * 299.98700 * 20 19 18 39 39 H 1.09001 * 109.54795 * 180.30404 * 20 19 18 40 40 H 1.08994 * 117.49978 * 214.97302 * 23 9 7 41 41 H 1.09004 * 117.49489 * 359.97438 * 23 9 7 42 42 H 1.09007 * 117.49961 * 252.51098 * 24 23 9 43 43 H 1.09000 * 117.49730 * 107.49556 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5920 7 6 2.0046 -1.1939 -0.0005 8 1 3.0781 -1.1977 0.1165 9 6 1.2600 -2.4939 -0.1643 10 6 2.1308 -3.7506 -0.2204 11 7 3.2970 -3.5777 0.6558 12 6 2.8970 -3.0453 1.9666 13 6 4.1436 -2.8244 2.8270 14 8 4.8680 -4.0532 2.9363 15 6 5.2703 -4.5945 1.6762 16 1 5.9251 -3.8850 1.1702 17 6 6.0205 -5.9067 1.8992 18 6 5.1032 -6.9117 2.5985 19 6 3.8732 -7.1683 1.7248 20 6 3.1219 -5.8619 1.5091 21 6 4.0301 -4.8443 0.8146 22 1 4.3329 -5.2175 -0.1638 23 6 -0.1102 -2.6132 0.5061 24 6 -0.0119 -2.4773 -1.0147 25 1 -0.4850 0.8401 0.0004 26 1 2.4667 -3.9146 -1.2442 27 1 1.5498 -4.6104 0.1134 28 1 2.3765 -2.0972 1.8305 29 1 2.2350 -3.7561 2.4612 30 1 3.8451 -2.4886 3.8202 31 1 4.7771 -2.0687 2.3627 32 1 6.3366 -6.3118 0.9379 33 1 6.8970 -5.7224 2.5204 34 1 5.6403 -7.8474 2.7542 35 1 4.7884 -6.5085 3.5610 36 1 4.1890 -7.5654 0.7601 37 1 3.2204 -7.8882 2.2183 38 1 2.8098 -5.4689 2.4766 39 1 2.2427 -6.0446 0.8913 40 1 -0.3911 -3.5869 0.9073 41 1 -0.4731 -1.7513 1.0662 42 1 -0.3103 -1.5259 -1.4553 43 1 -0.2282 -3.3616 -1.6140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:34 Heat of formation + Delta-G solvation = -9.851375 kcal Electronic energy + Delta-G solvation = -22093.026321 eV Core-core repulsion = 19139.040026 eV Total energy + Delta-G solvation = -2953.986294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20985 -37.09257 -35.75106 -34.49591 -31.55101 -30.33142 -29.60955 -27.87970 -25.70394 -24.10655 -23.01143 -22.28821 -20.70818 -20.63385 -18.92904 -18.30935 -16.39576 -15.71615 -15.61720 -15.25444 -15.12096 -14.72024 -13.91742 -13.67199 -13.25532 -13.16868 -12.94785 -12.82730 -12.40120 -12.09922 -11.92161 -11.58210 -11.25972 -11.02484 -10.95063 -10.85297 -10.67708 -10.54756 -10.31808 -10.11242 -10.05293 -9.94797 -9.72728 -9.37569 -9.00871 -8.70153 -8.33800 -8.03153 -7.42041 -5.95490 -3.96176 3.29358 3.37684 3.41066 4.13558 4.40333 4.49365 4.88814 4.97097 5.08146 5.14720 5.30634 5.38748 5.57555 5.60909 5.64223 5.75762 5.79077 5.85484 5.87657 5.93447 6.00829 6.06155 6.22872 6.25024 6.29098 6.33009 6.33636 6.43353 6.53537 6.59563 6.71276 6.75219 6.98169 7.09302 7.21814 7.31024 7.60475 7.68285 7.82075 7.94476 8.08589 8.21577 8.57228 9.02956 9.56421 11.00771 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.006606 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.308731 B = 4237.773994 C = 4881.612270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.018 3.982 10 C 0.099 3.901 11 N -0.510 5.510 12 C 0.006 3.994 13 C 0.064 3.936 14 O -0.386 6.386 15 C 0.102 3.898 16 H 0.060 0.940 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.150 4.150 21 C 0.052 3.948 22 H 0.081 0.919 23 C -0.192 4.192 24 C -0.189 4.189 25 H 0.257 0.743 26 H 0.059 0.941 27 H 0.018 0.982 28 H 0.137 0.863 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -10.340 3.700 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.497 4.497 8 H 0.095 0.905 9 C 0.017 3.983 10 C -0.028 4.028 11 N -0.232 5.232 12 C -0.121 4.121 13 C -0.013 4.013 14 O -0.306 6.306 15 C 0.044 3.956 16 H 0.078 0.922 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.188 4.188 21 C -0.057 4.057 22 H 0.099 0.901 23 C -0.229 4.229 24 C -0.227 4.227 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.154 0.846 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.184 -9.919 3.651 13.368 hybrid contribution -0.460 0.399 -0.032 0.609 sum 7.725 -9.520 3.620 12.783 Atomic orbital electron populations 1.70040 1.05836 1.25879 1.50083 1.25073 0.94889 0.99219 0.95501 0.86568 0.79987 0.83476 0.77931 1.20894 1.21538 1.19724 1.20685 0.94114 0.88168 1.46742 0.90546 1.19032 0.85627 0.92848 1.00748 1.21665 0.89693 0.96229 0.95231 1.62457 1.25004 1.23155 1.12607 1.23182 0.96255 1.04254 0.88408 1.22720 0.92953 0.85740 0.99896 1.87869 1.74565 1.39531 1.28610 1.21930 0.94261 0.94594 0.84842 0.92205 1.21491 0.98077 0.94102 1.01017 1.21452 0.96013 0.98058 0.99666 1.21327 0.96934 0.97256 0.99526 1.22000 0.99083 0.95841 1.01918 1.22367 0.94835 0.90115 0.98403 0.90120 1.22969 1.05329 0.98815 0.95822 1.22750 1.06576 1.00199 0.93174 0.93251 0.92313 0.96391 0.84601 0.95433 0.89368 0.92744 0.90935 0.91450 0.92584 0.91249 0.92502 0.92523 0.91094 0.92052 0.94563 0.87043 0.87516 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.83 8.65 55.43 0.48 -23.35 16 2 C 0.05 1.42 5.25 -17.82 -0.09 1.33 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.46 -11.84 6.48 -34.44 -0.22 -12.06 16 8 H 0.08 1.99 6.87 -52.49 -0.36 1.63 16 9 C 0.02 0.43 1.46 -155.66 -0.23 0.21 16 10 C 0.10 2.05 5.25 -3.83 -0.02 2.03 16 11 N -0.51 -9.78 4.05 -226.18 -0.92 -10.69 16 12 C 0.01 0.12 4.34 -3.72 -0.02 0.11 16 13 C 0.06 1.08 7.01 37.20 0.26 1.34 16 14 O -0.39 -6.38 9.25 -35.23 -0.33 -6.71 16 15 C 0.10 1.53 2.94 -26.81 -0.08 1.45 16 16 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.11 -1.30 5.65 -26.84 -0.15 -1.46 16 18 C -0.11 -1.34 5.79 -26.72 -0.15 -1.49 16 19 C -0.11 -1.37 5.90 -27.10 -0.16 -1.53 16 20 C -0.15 -2.25 4.32 -27.09 -0.12 -2.37 16 21 C 0.05 0.84 2.37 -67.49 -0.16 0.68 16 22 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 23 C -0.19 -4.66 9.31 -26.73 -0.25 -4.91 16 24 C -0.19 -4.63 9.38 -26.73 -0.25 -4.88 16 25 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.36 5.71 -51.93 -0.30 0.07 16 28 H 0.14 3.06 4.80 -51.93 -0.25 2.81 16 29 H 0.03 0.54 6.27 -51.93 -0.33 0.22 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.91 7.72 -51.93 -0.40 0.51 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.19 5.89 -51.93 -0.31 0.88 16 39 H 0.06 0.97 6.31 -51.93 -0.33 0.64 16 40 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 41 H 0.11 2.99 6.27 -51.93 -0.33 2.66 16 42 H 0.11 2.88 6.32 -51.92 -0.33 2.56 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -26.41 310.33 -9.87 -36.28 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.12 Total: 5.71 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.64 Total: -21.56 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.44 Total: -34.05 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.33 Total: -6.71 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.41 -9.87 -36.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.426 kcal (2) G-P(sol) polarization free energy of solvation -26.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds