Wall clock time and date at job start Mon Mar 30 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47302 * 274.98588 * 3 2 1 5 5 H 1.48502 * 109.47262 * 34.98717 * 3 2 1 6 6 H 1.48507 * 109.47016 * 154.98893 * 3 2 1 7 7 C 1.37871 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00351 * 187.18713 * 7 2 1 9 9 C 1.50701 * 119.99844 * 7.18329 * 7 2 1 10 10 C 1.53000 * 115.55167 * 177.06006 * 9 7 2 11 11 N 1.46895 * 109.46884 * 34.33386 * 10 9 7 12 12 C 1.47025 * 111.00194 * 46.62671 * 11 10 9 13 13 C 1.53076 * 109.37604 * 182.36658 * 12 11 10 14 14 O 1.43064 * 109.35248 * 303.45628 * 13 12 11 15 15 C 1.42923 * 113.60656 * 58.34294 * 14 13 12 16 16 H 1.09001 * 109.37924 * 60.68616 * 15 14 13 17 17 C 1.52794 * 109.55580 * 180.56484 * 15 14 13 18 18 C 1.52991 * 109.66135 * 60.60268 * 17 15 14 19 19 C 1.53033 * 109.33384 * 59.91500 * 18 17 15 20 20 C 1.52235 * 109.49471 * 299.87046 * 19 18 17 21 21 C 1.47208 * 111.00271 * 169.99827 * 11 10 9 22 22 H 1.09006 * 109.63741 * 57.24812 * 21 11 10 23 23 C 1.53004 * 117.52131 * 322.76667 * 9 7 2 24 24 C 1.52999 * 60.00068 * 107.47895 * 23 9 7 25 25 H 0.97008 * 119.99891 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47501 * 274.32962 * 10 9 7 27 27 H 1.09002 * 109.47024 * 154.33192 * 10 9 7 28 28 H 1.09004 * 109.48769 * 302.33463 * 12 11 10 29 29 H 1.09002 * 109.48723 * 62.39412 * 12 11 10 30 30 H 1.09005 * 109.48653 * 183.49454 * 13 12 11 31 31 H 1.08995 * 109.50856 * 63.43547 * 13 12 11 32 32 H 1.08997 * 109.44045 * 180.66124 * 17 15 14 33 33 H 1.09001 * 109.43897 * 300.54734 * 17 15 14 34 34 H 1.09001 * 109.49495 * 179.87129 * 18 17 15 35 35 H 1.09002 * 109.49417 * 299.92916 * 18 17 15 36 36 H 1.08998 * 109.48536 * 59.66469 * 19 18 17 37 37 H 1.08996 * 109.48651 * 179.69964 * 19 18 17 38 38 H 1.08996 * 108.96350 * 299.98700 * 20 19 18 39 39 H 1.09001 * 109.54795 * 180.30404 * 20 19 18 40 40 H 1.08994 * 117.49978 * 214.97302 * 23 9 7 41 41 H 1.09004 * 117.49489 * 359.97438 * 23 9 7 42 42 H 1.09007 * 117.49961 * 252.51098 * 24 23 9 43 43 H 1.09000 * 117.49730 * 107.49556 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5920 7 6 2.0046 -1.1939 -0.0005 8 1 3.0781 -1.1977 0.1165 9 6 1.2600 -2.4939 -0.1643 10 6 2.1308 -3.7506 -0.2204 11 7 3.2970 -3.5777 0.6558 12 6 2.8970 -3.0453 1.9666 13 6 4.1436 -2.8244 2.8270 14 8 4.8680 -4.0532 2.9363 15 6 5.2703 -4.5945 1.6762 16 1 5.9251 -3.8850 1.1702 17 6 6.0205 -5.9067 1.8992 18 6 5.1032 -6.9117 2.5985 19 6 3.8732 -7.1683 1.7248 20 6 3.1219 -5.8619 1.5091 21 6 4.0301 -4.8443 0.8146 22 1 4.3329 -5.2175 -0.1638 23 6 -0.1102 -2.6132 0.5061 24 6 -0.0119 -2.4773 -1.0147 25 1 -0.4850 0.8401 0.0004 26 1 2.4667 -3.9146 -1.2442 27 1 1.5498 -4.6104 0.1134 28 1 2.3765 -2.0972 1.8305 29 1 2.2350 -3.7561 2.4612 30 1 3.8451 -2.4886 3.8202 31 1 4.7771 -2.0687 2.3627 32 1 6.3366 -6.3118 0.9379 33 1 6.8970 -5.7224 2.5204 34 1 5.6403 -7.8474 2.7542 35 1 4.7884 -6.5085 3.5610 36 1 4.1890 -7.5654 0.7601 37 1 3.2204 -7.8882 2.2183 38 1 2.8098 -5.4689 2.4766 39 1 2.2427 -6.0446 0.8913 40 1 -0.3911 -3.5869 0.9073 41 1 -0.4731 -1.7513 1.0662 42 1 -0.3103 -1.5259 -1.4553 43 1 -0.2282 -3.3616 -1.6140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:33 Heat of formation + Delta-G solvation = -23.933670 kcal Electronic energy + Delta-G solvation = -22093.636975 eV Core-core repulsion = 19139.040026 eV Total energy + Delta-G solvation = -2954.596948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52675 -38.83369 -36.92466 -36.03698 -33.54375 -31.50411 -30.82751 -29.39113 -27.64162 -25.58419 -24.39613 -23.44188 -22.62029 -21.88203 -20.68777 -19.64635 -18.16483 -17.12951 -16.95874 -16.80673 -16.57594 -16.23537 -15.43191 -15.32559 -14.54135 -14.37843 -14.37108 -14.28348 -13.85866 -13.53236 -13.20544 -13.04882 -12.89918 -12.78377 -12.57414 -12.31889 -12.07028 -12.06445 -11.90789 -11.76405 -11.44321 -11.29083 -11.16394 -10.98866 -10.65500 -10.44501 -10.18044 -9.99937 -8.92789 -7.96806 -6.01833 1.42643 1.46545 1.55268 2.46533 2.88359 3.04013 3.13491 3.77781 3.87551 3.91336 4.05742 4.18545 4.24191 4.31762 4.38247 4.38986 4.49844 4.52830 4.59322 4.67072 4.73462 4.77586 4.82568 4.84742 4.96586 4.99529 5.09212 5.14871 5.21711 5.25787 5.29263 5.33443 5.34057 5.44005 5.48910 5.57776 5.67022 5.96413 6.18633 6.23368 6.31954 6.45793 6.60882 7.00125 7.52282 8.97942 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.006606 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.308731 B = 4237.773994 C = 4881.612270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.071 0.929 9 C 0.016 3.984 10 C 0.108 3.892 11 N -0.521 5.521 12 C 0.016 3.984 13 C 0.070 3.930 14 O -0.389 6.389 15 C 0.097 3.903 16 H 0.054 0.946 17 C -0.104 4.104 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.143 4.143 21 C 0.051 3.949 22 H 0.091 0.909 23 C -0.188 4.188 24 C -0.192 4.192 25 H 0.254 0.746 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.102 0.898 29 H 0.020 0.980 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 -12.014 3.814 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.015 3.985 10 C -0.020 4.020 11 N -0.244 5.244 12 C -0.111 4.111 13 C -0.007 4.007 14 O -0.308 6.308 15 C 0.039 3.961 16 H 0.072 0.928 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.182 4.182 21 C -0.057 4.057 22 H 0.109 0.891 23 C -0.226 4.226 24 C -0.230 4.230 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.120 0.880 29 H 0.038 0.962 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.059 -11.604 3.768 15.812 hybrid contribution -1.047 0.897 -0.068 1.381 sum 9.012 -10.707 3.700 14.475 Atomic orbital electron populations 1.70181 1.06852 1.26139 1.51030 1.25696 0.95561 1.01942 0.95657 0.85676 0.79036 0.80133 0.77564 1.21034 1.21655 1.19122 1.20831 0.93905 0.89144 1.46165 0.91116 1.19166 0.85743 0.93811 0.99757 1.21501 0.89947 0.94638 0.95876 1.62419 1.24283 1.25454 1.12275 1.22937 0.97034 1.02198 0.88972 1.22634 0.91856 0.86059 1.00186 1.87881 1.74240 1.39068 1.29598 1.22139 0.93802 0.96149 0.84002 0.92815 1.21527 0.97913 0.92280 1.02468 1.21434 0.95844 0.99051 0.98522 1.21316 0.97031 0.95615 1.00641 1.21907 0.98861 0.97123 1.00300 1.22491 0.94988 0.88856 0.99408 0.89057 1.22778 1.05984 0.98366 0.95449 1.22662 1.07361 0.99734 0.93293 0.93623 0.92008 0.95754 0.87977 0.96181 0.87843 0.93327 0.88820 0.90454 0.89995 0.92963 0.90950 0.91627 0.93177 0.93073 0.93068 0.89767 0.90213 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.14 8.65 21.44 0.19 -49.95 16 2 C 0.01 0.53 5.25 84.65 0.44 0.97 16 3 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.46 -24.13 6.48 25.60 0.17 -23.97 16 8 H 0.07 3.71 6.87 -2.91 -0.02 3.69 16 9 C 0.02 0.76 1.46 -52.93 -0.08 0.68 16 10 C 0.11 4.39 5.25 86.30 0.45 4.85 16 11 N -0.52 -19.66 4.05 -869.50 -3.52 -23.18 16 12 C 0.02 0.64 4.34 86.30 0.37 1.01 16 13 C 0.07 2.33 7.01 72.01 0.50 2.83 16 14 O -0.39 -12.26 9.25 -148.98 -1.38 -13.64 16 15 C 0.10 2.70 2.94 30.54 0.09 2.79 16 16 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.10 -2.13 5.65 30.52 0.17 -1.96 16 18 C -0.11 -2.22 5.79 30.60 0.18 -2.04 16 19 C -0.11 -2.30 5.90 30.35 0.18 -2.12 16 20 C -0.14 -4.06 4.32 30.36 0.13 -3.93 16 21 C 0.05 1.55 2.37 44.89 0.11 1.66 16 22 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 23 C -0.19 -9.28 9.31 30.60 0.28 -8.99 16 24 C -0.19 -9.51 9.38 30.59 0.29 -9.22 16 25 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 27 H 0.02 0.96 5.71 -2.39 -0.01 0.95 16 28 H 0.10 4.70 4.80 -2.38 -0.01 4.69 16 29 H 0.02 0.80 6.27 -2.39 -0.01 0.78 16 30 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.24 7.72 -2.39 -0.02 1.22 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.63 5.89 -2.39 -0.01 1.62 16 39 H 0.05 1.54 6.31 -2.39 -0.02 1.53 16 40 H 0.05 2.33 8.05 -2.39 -0.02 2.31 16 41 H 0.08 4.66 6.27 -2.38 -0.01 4.64 16 42 H 0.08 4.41 6.32 -2.38 -0.02 4.39 16 43 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -56.77 310.33 1.59 -55.18 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.98 Total: 23.97 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.29 Total: -37.43 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -3.33 Total: -73.13 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.38 Total: -13.64 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -56.77 1.59 -55.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.247 kcal (2) G-P(sol) polarization free energy of solvation -56.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds