Wall clock time and date at job start Mon Mar 30 2020 07:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.48564 * 111.00021 * 285.41300 * 12 11 10 14 14 C 1.54377 * 104.59513 * 200.96333 * 13 12 11 15 15 C 1.54257 * 105.06291 * 23.85165 * 14 13 12 16 16 C 1.48565 * 110.99953 * 169.99674 * 12 11 10 17 17 H 1.09005 * 110.40750 * 40.26001 * 16 12 11 18 18 C 1.53000 * 110.41311 * 277.93502 * 16 12 11 19 19 H 1.08997 * 109.96543 * 59.81840 * 18 16 12 20 20 C 1.54275 * 109.98360 * 181.12836 * 18 16 12 21 21 C 1.54987 * 103.75140 * 142.47377 * 20 18 16 22 22 C 1.54895 * 102.33048 * 322.91617 * 21 20 18 23 23 C 1.51442 * 109.98584 * 298.54752 * 18 16 12 24 24 O 1.20764 * 126.34259 * 60.98661 * 23 18 16 25 25 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 32 32 H 1.08994 * 110.41192 * 319.74246 * 13 12 11 33 33 H 1.09002 * 110.40438 * 82.18451 * 13 12 11 34 34 H 1.09008 * 110.32006 * 264.95842 * 14 13 12 35 35 H 1.08993 * 110.32370 * 142.75344 * 14 13 12 36 36 H 1.08997 * 110.32926 * 241.10580 * 15 14 13 37 37 H 1.09001 * 110.32107 * 118.89597 * 15 14 13 38 38 H 1.09003 * 110.57279 * 261.03986 * 20 18 16 39 39 H 1.08997 * 110.57088 * 23.90683 * 20 18 16 40 40 H 1.08992 * 110.83112 * 204.70630 * 21 20 18 41 41 H 1.08998 * 111.00248 * 81.20361 * 21 20 18 42 42 H 1.09000 * 110.43957 * 278.88495 * 22 21 20 43 43 H 1.08999 * 110.43661 * 156.36068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 7 6.0413 -4.0214 0.0040 13 6 5.8702 -4.6461 1.3410 14 6 6.8708 -5.8216 1.3521 15 6 7.9475 -5.4414 0.3149 16 6 7.5068 -4.0680 -0.2357 17 1 8.0061 -3.2638 0.3047 18 6 7.8060 -3.9696 -1.7329 19 1 7.4130 -3.0338 -2.1303 20 6 9.3280 -4.0474 -1.9727 21 6 9.4536 -4.8748 -3.2772 22 6 8.3163 -5.9146 -3.1203 23 6 7.1860 -5.1428 -2.4629 24 8 6.0103 -5.4144 -2.5126 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1509 -0.8875 29 1 3.6580 -3.1497 0.8925 30 1 5.9157 -2.1230 -0.8865 31 1 5.9143 -2.1221 0.8934 32 1 6.1134 -3.9324 2.1280 33 1 4.8509 -5.0133 1.4612 34 1 6.3725 -6.7457 1.0591 35 1 7.3181 -5.9287 2.3402 36 1 7.9777 -6.1788 -0.4872 37 1 8.9233 -5.3617 0.7940 38 1 9.7456 -3.0500 -2.1101 39 1 9.8203 -4.5592 -1.1457 40 1 10.4244 -5.3673 -3.3318 41 1 9.2884 -4.2489 -4.1542 42 1 8.6379 -6.7369 -2.4813 43 1 8.0052 -6.2884 -4.0958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093450286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:44 Heat of formation + Delta-G solvation = -75.117519 kcal Electronic energy + Delta-G solvation = -20809.107805 eV Core-core repulsion = 17852.291358 eV Total energy + Delta-G solvation = -2956.816447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39408 -39.35072 -37.04897 -36.09772 -34.31500 -32.08597 -31.64093 -28.27480 -28.22692 -26.85313 -24.46300 -22.60051 -22.14320 -21.77552 -21.01563 -19.39192 -18.92689 -17.54443 -17.00771 -16.60541 -16.20375 -16.06988 -16.03868 -15.26823 -14.92169 -14.77775 -14.46276 -14.27630 -14.07894 -13.73080 -13.56193 -13.25940 -13.03679 -12.95134 -12.58855 -12.41761 -12.16735 -12.02296 -11.94319 -11.88517 -11.78107 -11.52897 -11.45739 -11.41301 -11.26434 -11.24952 -10.79349 -10.19324 -9.32161 -8.32052 -6.37240 1.17023 1.32949 1.35907 1.48260 2.34317 2.94116 3.02532 3.33264 3.53851 3.63974 3.80260 3.98042 4.04402 4.14366 4.23625 4.29628 4.31108 4.37731 4.45752 4.56917 4.63056 4.65930 4.75201 4.81833 4.86467 4.88665 4.92898 4.98488 5.01484 5.03557 5.10445 5.16630 5.23518 5.25201 5.30070 5.45532 5.47426 5.55149 5.62826 6.01686 6.12206 6.27729 6.70405 6.79661 7.27103 8.85504 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.004444 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.822310 B = 6299.353147 C = 6644.668014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.022 0.978 9 C -0.006 4.006 10 C -0.083 4.083 11 C 0.060 3.940 12 N -0.521 5.521 13 C 0.028 3.972 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.070 3.930 17 H 0.070 0.930 18 C -0.144 4.144 19 H 0.083 0.917 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.182 4.182 23 C 0.365 3.635 24 O -0.472 6.472 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.472 -10.431 -1.818 30.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.041 0.959 9 C -0.044 4.044 10 C -0.121 4.121 11 C -0.069 4.069 12 N -0.245 5.245 13 C -0.100 4.100 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.038 4.038 17 H 0.088 0.912 18 C -0.164 4.164 19 H 0.101 0.899 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.219 4.219 23 C 0.240 3.760 24 O -0.345 6.345 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.389 -10.752 -2.254 29.510 hybrid contribution -0.707 1.206 0.524 1.492 sum 26.683 -9.547 -1.730 28.392 Atomic orbital electron populations 1.70088 1.08462 1.28302 1.52564 1.26119 0.95722 1.03835 0.93834 0.85542 0.79473 0.77570 0.79338 1.19020 1.20564 1.16747 1.21491 0.92293 0.92972 1.50757 0.95913 1.19469 0.93815 0.94688 0.96438 1.21175 0.94335 0.96745 0.99816 1.22163 0.94974 0.89231 1.00487 1.65331 1.14406 1.16815 1.27961 1.23134 1.00126 0.96911 0.89836 1.22274 0.95884 0.97140 1.00411 1.22442 0.99474 0.94816 0.98513 1.22643 0.88024 0.98941 0.94190 0.91162 1.22438 0.99148 0.99315 0.95508 0.89938 1.22373 0.90898 1.02186 0.98959 1.22425 0.98389 0.96363 0.97686 1.23019 0.95906 1.00396 1.02591 1.25360 0.88890 0.85687 0.76042 1.90455 1.21315 1.69258 1.53496 0.92387 0.95892 0.96381 0.94724 0.94165 0.91254 0.94050 0.93384 0.92388 0.92022 0.89057 0.91332 0.87859 0.89498 0.88719 0.87759 0.90948 0.86381 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.69 13.96 21.45 0.30 -62.39 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.96 45.96 27.47 68.60 1.88 47.84 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.54 -33.51 9.66 25.60 0.25 -33.26 16 8 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 9 C -0.01 -0.32 4.04 29.85 0.12 -0.19 16 10 C -0.08 -3.72 5.27 30.59 0.16 -3.56 16 11 C 0.06 2.08 4.78 86.30 0.41 2.49 16 12 N -0.52 -16.12 4.23 -856.70 -3.63 -19.74 16 13 C 0.03 0.77 5.91 86.45 0.51 1.28 16 14 C -0.12 -2.40 7.00 31.49 0.22 -2.18 16 15 C -0.11 -1.92 5.30 31.49 0.17 -1.75 16 16 C 0.07 1.52 2.05 45.06 0.09 1.61 16 17 H 0.07 1.37 8.00 -2.38 -0.02 1.35 16 18 C -0.14 -2.91 2.82 -10.87 -0.03 -2.94 16 19 H 0.08 1.95 7.30 -2.39 -0.02 1.93 16 20 C -0.11 -1.12 6.25 31.71 0.20 -0.93 16 21 C -0.11 -1.02 6.95 31.92 0.22 -0.80 16 22 C -0.18 -2.61 6.49 30.86 0.20 -2.41 16 23 C 0.36 9.00 5.58 29.70 0.17 9.16 16 24 O -0.47 -17.15 17.38 -1.46 -0.03 -17.17 16 25 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 26 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 28 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.85 7.47 -2.39 -0.02 1.83 16 30 H 0.07 2.34 7.17 -2.39 -0.02 2.32 16 31 H 0.04 1.34 7.77 -2.39 -0.02 1.32 16 32 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.06 1.86 7.85 -2.39 -0.02 1.84 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.15 5.73 -2.39 -0.01 1.14 16 37 H 0.10 1.07 8.01 -2.39 -0.02 1.05 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.69 6.90 -2.39 -0.02 0.67 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.12 1.27 7.53 -2.39 -0.02 1.26 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -78.40 330.89 2.59 -75.81 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.91 Total: 8.60 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 3.15 Total: -32.94 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.33 Total: -82.14 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.03 Total: -17.17 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal Total: -78.40 2.59 -75.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093450286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.693 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds