Wall clock time and date at job start Mon Mar 30 2020 07:51:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99787 * 2 1
4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1
5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1
6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1
7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7
12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9
13 13 C 1.48564 * 111.00021 * 285.41300 * 12 11 10
14 14 C 1.54377 * 104.59513 * 200.96333 * 13 12 11
15 15 C 1.54257 * 105.06291 * 23.85165 * 14 13 12
16 16 C 1.48565 * 110.99953 * 169.99674 * 12 11 10
17 17 H 1.09005 * 110.40750 * 40.26001 * 16 12 11
18 18 C 1.53000 * 110.41311 * 277.93502 * 16 12 11
19 19 H 1.08997 * 109.96543 * 59.81840 * 18 16 12
20 20 C 1.54275 * 109.98360 * 181.12836 * 18 16 12
21 21 C 1.54987 * 103.75140 * 142.47377 * 20 18 16
22 22 C 1.54895 * 102.33048 * 322.91617 * 21 20 18
23 23 C 1.51442 * 109.98584 * 298.54752 * 18 16 12
24 24 O 1.20764 * 126.34259 * 60.98661 * 23 18 16
25 25 H 0.96994 * 119.99814 * 0.02562 * 1 2 3
26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
30 30 H 1.09001 * 109.47194 * 299.99650 * 11 10 9
31 31 H 1.08992 * 109.47399 * 59.99823 * 11 10 9
32 32 H 1.08994 * 110.41192 * 319.74246 * 13 12 11
33 33 H 1.09002 * 110.40438 * 82.18451 * 13 12 11
34 34 H 1.09008 * 110.32006 * 264.95842 * 14 13 12
35 35 H 1.08993 * 110.32370 * 142.75344 * 14 13 12
36 36 H 1.08997 * 110.32926 * 241.10580 * 15 14 13
37 37 H 1.09001 * 110.32107 * 118.89597 * 15 14 13
38 38 H 1.09003 * 110.57279 * 261.03986 * 20 18 16
39 39 H 1.08997 * 110.57088 * 23.90683 * 20 18 16
40 40 H 1.08992 * 110.83112 * 204.70630 * 21 20 18
41 41 H 1.08998 * 111.00248 * 81.20361 * 21 20 18
42 42 H 1.09000 * 110.43957 * 278.88495 * 22 21 20
43 43 H 1.08999 * 110.43661 * 156.36068 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4968 2.0464 -1.4001
5 1 1.4465 2.6528 0.6998
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0014
9 6 3.5116 -1.1940 0.0011
10 6 4.0217 -2.6365 0.0023
11 6 5.5517 -2.6364 0.0035
12 7 6.0413 -4.0214 0.0040
13 6 5.8702 -4.6461 1.3410
14 6 6.8708 -5.8216 1.3521
15 6 7.9475 -5.4414 0.3149
16 6 7.5068 -4.0680 -0.2357
17 1 8.0061 -3.2638 0.3047
18 6 7.8060 -3.9696 -1.7329
19 1 7.4130 -3.0338 -2.1303
20 6 9.3280 -4.0474 -1.9727
21 6 9.4536 -4.8748 -3.2772
22 6 8.3163 -5.9146 -3.1203
23 6 7.1860 -5.1428 -2.4629
24 8 6.0103 -5.4144 -2.5126
25 1 -0.4849 0.8400 -0.0004
26 1 3.8746 -0.6799 0.8911
27 1 3.8752 -0.6803 -0.8888
28 1 3.6587 -3.1509 -0.8875
29 1 3.6580 -3.1497 0.8925
30 1 5.9157 -2.1230 -0.8865
31 1 5.9143 -2.1221 0.8934
32 1 6.1134 -3.9324 2.1280
33 1 4.8509 -5.0133 1.4612
34 1 6.3725 -6.7457 1.0591
35 1 7.3181 -5.9287 2.3402
36 1 7.9777 -6.1788 -0.4872
37 1 8.9233 -5.3617 0.7940
38 1 9.7456 -3.0500 -2.1101
39 1 9.8203 -4.5592 -1.1457
40 1 10.4244 -5.3673 -3.3318
41 1 9.2884 -4.2489 -4.1542
42 1 8.6379 -6.7369 -2.4813
43 1 8.0052 -6.2884 -4.0958
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000093450286.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:51:44
Heat of formation + Delta-G solvation = -75.117519 kcal
Electronic energy + Delta-G solvation = -20809.107805 eV
Core-core repulsion = 17852.291358 eV
Total energy + Delta-G solvation = -2956.816447 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.39408 -39.35072 -37.04897 -36.09772 -34.31500 -32.08597 -31.64093 -28.27480
-28.22692 -26.85313 -24.46300 -22.60051 -22.14320 -21.77552 -21.01563 -19.39192
-18.92689 -17.54443 -17.00771 -16.60541 -16.20375 -16.06988 -16.03868 -15.26823
-14.92169 -14.77775 -14.46276 -14.27630 -14.07894 -13.73080 -13.56193 -13.25940
-13.03679 -12.95134 -12.58855 -12.41761 -12.16735 -12.02296 -11.94319 -11.88517
-11.78107 -11.52897 -11.45739 -11.41301 -11.26434 -11.24952 -10.79349 -10.19324
-9.32161 -8.32052 -6.37240 1.17023 1.32949 1.35907 1.48260 2.34317
2.94116 3.02532 3.33264 3.53851 3.63974 3.80260 3.98042 4.04402
4.14366 4.23625 4.29628 4.31108 4.37731 4.45752 4.56917 4.63056
4.65930 4.75201 4.81833 4.86467 4.88665 4.92898 4.98488 5.01484
5.03557 5.10445 5.16630 5.23518 5.25201 5.30070 5.45532 5.47426
5.55149 5.62826 6.01686 6.12206 6.27729 6.70405 6.79661 7.27103
8.85504
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.024581 B = 0.004444 C = 0.004213
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.822310 B = 6299.353147 C = 6644.668014
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.954 5.954
2 C 0.001 3.999
3 Si 0.958 3.042
4 H -0.265 1.265
5 H -0.280 1.280
6 H -0.244 1.244
7 C -0.537 4.537
8 H 0.022 0.978
9 C -0.006 4.006
10 C -0.083 4.083
11 C 0.060 3.940
12 N -0.521 5.521
13 C 0.028 3.972
14 C -0.119 4.119
15 C -0.115 4.115
16 C 0.070 3.930
17 H 0.070 0.930
18 C -0.144 4.144
19 H 0.083 0.917
20 C -0.106 4.106
21 C -0.111 4.111
22 C -0.182 4.182
23 C 0.365 3.635
24 O -0.472 6.472
25 H 0.267 0.733
26 H 0.023 0.977
27 H 0.018 0.982
28 H 0.034 0.966
29 H 0.040 0.960
30 H 0.069 0.931
31 H 0.041 0.959
32 H 0.048 0.952
33 H 0.058 0.942
34 H 0.061 0.939
35 H 0.091 0.909
36 H 0.068 0.932
37 H 0.103 0.897
38 H 0.086 0.914
39 H 0.094 0.906
40 H 0.104 0.896
41 H 0.072 0.928
42 H 0.118 0.882
43 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.472 -10.431 -1.818 30.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.195 4.195
3 Si 0.781 3.219
4 H -0.190 1.190
5 H -0.206 1.206
6 H -0.167 1.167
7 C -0.575 4.575
8 H 0.041 0.959
9 C -0.044 4.044
10 C -0.121 4.121
11 C -0.069 4.069
12 N -0.245 5.245
13 C -0.100 4.100
14 C -0.157 4.157
15 C -0.152 4.152
16 C -0.038 4.038
17 H 0.088 0.912
18 C -0.164 4.164
19 H 0.101 0.899
20 C -0.144 4.144
21 C -0.149 4.149
22 C -0.219 4.219
23 C 0.240 3.760
24 O -0.345 6.345
25 H 0.076 0.924
26 H 0.041 0.959
27 H 0.036 0.964
28 H 0.053 0.947
29 H 0.058 0.942
30 H 0.087 0.913
31 H 0.060 0.940
32 H 0.066 0.934
33 H 0.076 0.924
34 H 0.080 0.920
35 H 0.109 0.891
36 H 0.087 0.913
37 H 0.121 0.879
38 H 0.105 0.895
39 H 0.113 0.887
40 H 0.122 0.878
41 H 0.091 0.909
42 H 0.136 0.864
43 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 27.389 -10.752 -2.254 29.510
hybrid contribution -0.707 1.206 0.524 1.492
sum 26.683 -9.547 -1.730 28.392
Atomic orbital electron populations
1.70088 1.08462 1.28302 1.52564 1.26119 0.95722 1.03835 0.93834
0.85542 0.79473 0.77570 0.79338 1.19020 1.20564 1.16747 1.21491
0.92293 0.92972 1.50757 0.95913 1.19469 0.93815 0.94688 0.96438
1.21175 0.94335 0.96745 0.99816 1.22163 0.94974 0.89231 1.00487
1.65331 1.14406 1.16815 1.27961 1.23134 1.00126 0.96911 0.89836
1.22274 0.95884 0.97140 1.00411 1.22442 0.99474 0.94816 0.98513
1.22643 0.88024 0.98941 0.94190 0.91162 1.22438 0.99148 0.99315
0.95508 0.89938 1.22373 0.90898 1.02186 0.98959 1.22425 0.98389
0.96363 0.97686 1.23019 0.95906 1.00396 1.02591 1.25360 0.88890
0.85687 0.76042 1.90455 1.21315 1.69258 1.53496 0.92387 0.95892
0.96381 0.94724 0.94165 0.91254 0.94050 0.93384 0.92388 0.92022
0.89057 0.91332 0.87859 0.89498 0.88719 0.87759 0.90948 0.86381
0.89378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -62.69 13.96 21.45 0.30 -62.39 16
2 C 0.00 0.07 5.47 84.65 0.46 0.54 16
3 Si 0.96 45.96 27.47 68.60 1.88 47.84 16
4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16
6 H -0.24 -10.75 6.54 99.48 0.65 -10.10 16
7 C -0.54 -33.51 9.66 25.60 0.25 -33.26 16
8 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16
9 C -0.01 -0.32 4.04 29.85 0.12 -0.19 16
10 C -0.08 -3.72 5.27 30.59 0.16 -3.56 16
11 C 0.06 2.08 4.78 86.30 0.41 2.49 16
12 N -0.52 -16.12 4.23 -856.70 -3.63 -19.74 16
13 C 0.03 0.77 5.91 86.45 0.51 1.28 16
14 C -0.12 -2.40 7.00 31.49 0.22 -2.18 16
15 C -0.11 -1.92 5.30 31.49 0.17 -1.75 16
16 C 0.07 1.52 2.05 45.06 0.09 1.61 16
17 H 0.07 1.37 8.00 -2.38 -0.02 1.35 16
18 C -0.14 -2.91 2.82 -10.87 -0.03 -2.94 16
19 H 0.08 1.95 7.30 -2.39 -0.02 1.93 16
20 C -0.11 -1.12 6.25 31.71 0.20 -0.93 16
21 C -0.11 -1.02 6.95 31.92 0.22 -0.80 16
22 C -0.18 -2.61 6.49 30.86 0.20 -2.41 16
23 C 0.36 9.00 5.58 29.70 0.17 9.16 16
24 O -0.47 -17.15 17.38 -1.46 -0.03 -17.17 16
25 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16
26 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16
27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16
28 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16
29 H 0.04 1.85 7.47 -2.39 -0.02 1.83 16
30 H 0.07 2.34 7.17 -2.39 -0.02 2.32 16
31 H 0.04 1.34 7.77 -2.39 -0.02 1.32 16
32 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16
33 H 0.06 1.86 7.85 -2.39 -0.02 1.84 16
34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16
35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.07 1.15 5.73 -2.39 -0.01 1.14 16
37 H 0.10 1.07 8.01 -2.39 -0.02 1.05 16
38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
39 H 0.09 0.69 6.90 -2.39 -0.02 0.67 16
40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
42 H 0.12 1.27 7.53 -2.39 -0.02 1.26 16
43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
Total: -1.00 -78.40 330.89 2.59 -75.81
By element:
Atomic # 1 Polarization: 7.69 SS G_CDS: 0.91 Total: 8.60 kcal
Atomic # 6 Polarization: -36.09 SS G_CDS: 3.15 Total: -32.94 kcal
Atomic # 7 Polarization: -78.81 SS G_CDS: -3.33 Total: -82.14 kcal
Atomic # 8 Polarization: -17.15 SS G_CDS: -0.03 Total: -17.17 kcal
Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal
Total: -78.40 2.59 -75.81 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093450286.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.693 kcal
(2) G-P(sol) polarization free energy of solvation -78.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.705 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds