Wall clock time and date at job start Mon Mar 30 2020 07:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99684 * 2 1 4 4 H 1.48498 * 109.47350 * 270.00195 * 3 2 1 5 5 H 1.48501 * 109.47208 * 30.00370 * 3 2 1 6 6 H 1.48504 * 109.46692 * 150.00295 * 3 2 1 7 7 C 1.37873 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46908 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.48538 * 110.99580 * 281.75631 * 11 10 9 13 13 C 1.54934 * 103.22226 * 200.27648 * 12 11 10 14 14 C 1.54594 * 102.92329 * 37.41958 * 13 12 11 15 15 C 1.47898 * 111.00035 * 164.36188 * 11 10 9 16 16 H 1.09000 * 110.08331 * 26.40101 * 15 11 10 17 17 C 1.52997 * 109.91640 * 265.19474 * 15 11 10 18 18 H 1.09004 * 109.62325 * 60.74510 * 17 15 11 19 19 C 1.53227 * 109.62811 * 300.16654 * 17 15 11 20 20 C 1.52960 * 109.40781 * 185.65589 * 19 17 15 21 21 C 1.52964 * 109.81172 * 63.59612 * 20 19 17 22 22 C 1.53221 * 109.40960 * 296.40446 * 21 20 19 23 23 C 1.51264 * 109.62656 * 181.12023 * 17 15 11 24 24 O 1.20762 * 120.85474 * 351.08832 * 23 17 15 25 25 H 0.96998 * 120.00366 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47526 * 60.00424 * 9 7 2 27 27 H 1.09006 * 109.47112 * 299.99822 * 9 7 2 28 28 H 1.09001 * 109.47434 * 59.99944 * 10 9 7 29 29 H 1.08997 * 109.47462 * 299.99743 * 10 9 7 30 30 H 1.08999 * 110.66600 * 81.84450 * 12 11 10 31 31 H 1.09002 * 110.66896 * 318.71449 * 12 11 10 32 32 H 1.08998 * 110.72509 * 279.05602 * 13 12 11 33 33 H 1.09004 * 110.72260 * 155.77852 * 13 12 11 34 34 H 1.08997 * 110.30848 * 96.95949 * 14 13 12 35 35 H 1.09000 * 110.30749 * 219.02536 * 14 13 12 36 36 H 1.08998 * 109.48466 * 305.63989 * 19 17 15 37 37 H 1.09001 * 109.48243 * 65.67695 * 19 17 15 38 38 H 1.08998 * 109.41122 * 303.49872 * 20 19 17 39 39 H 1.08995 * 109.35707 * 183.67144 * 20 19 17 40 40 H 1.09005 * 109.47871 * 176.41913 * 21 20 19 41 41 H 1.09000 * 109.48964 * 56.39238 * 21 20 19 42 42 H 1.09004 * 109.62529 * 294.91848 * 22 21 20 43 43 H 1.08998 * 109.78665 * 174.43550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 0.9996 -5.2544 1.3563 13 6 0.7500 -6.7820 1.2898 14 6 1.9283 -7.2876 0.4261 15 6 2.3975 -6.0580 -0.3734 16 1 3.4301 -5.8206 -0.1174 17 6 2.2836 -6.3370 -1.8734 18 1 2.5888 -5.4536 -2.4343 19 6 0.8355 -6.6977 -2.2212 20 6 0.7541 -7.1121 -3.6914 21 6 1.5808 -8.3787 -3.9195 22 6 3.0569 -8.0814 -3.6356 23 6 3.1718 -7.5046 -2.2419 24 8 3.9524 -7.9651 -1.4437 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.0697 -4.7208 1.5528 31 1 1.7469 -5.0191 2.1142 32 1 -0.2028 -6.9965 0.8060 33 1 0.7855 -7.2223 2.2864 34 1 2.7334 -7.6551 1.0624 35 1 1.5920 -8.0741 -0.2494 36 1 0.5054 -7.5240 -1.5918 37 1 0.1946 -5.8326 -2.0514 38 1 1.1430 -6.3082 -4.3164 39 1 -0.2856 -7.3056 -3.9551 40 1 1.4680 -8.7051 -4.9534 41 1 1.2331 -9.1654 -3.2500 42 1 3.4314 -7.3602 -4.3621 43 1 3.6377 -9.0015 -3.7001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093470530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:44 Heat of formation + Delta-G solvation = -59.287759 kcal Electronic energy + Delta-G solvation = -21067.582905 eV Core-core repulsion = 18111.452888 eV Total energy + Delta-G solvation = -2956.130017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49184 -38.23345 -36.23357 -33.69553 -32.02881 -31.64011 -29.31140 -28.43343 -26.89210 -24.35369 -23.22273 -21.63878 -21.33427 -20.41295 -19.75413 -18.45859 -16.41288 -15.92518 -15.60882 -15.43753 -14.99514 -14.62184 -14.43499 -14.16963 -13.77705 -13.69414 -13.10475 -12.82618 -12.49268 -12.27573 -12.21195 -11.90185 -11.66374 -11.49894 -11.17082 -11.00391 -10.91999 -10.81632 -10.76309 -10.67058 -10.51739 -10.35227 -10.17234 -9.76646 -9.44506 -9.17859 -9.08651 -8.32004 -7.80431 -5.98057 -4.00375 2.00402 3.32595 3.38869 3.42174 3.94105 4.44950 4.62382 4.70189 4.73207 4.76836 4.84526 5.03396 5.16336 5.26361 5.28945 5.37946 5.40067 5.43595 5.52639 5.65885 5.73355 5.79540 5.82396 5.94607 6.01552 6.05690 6.10024 6.14503 6.15436 6.21643 6.38430 6.42474 6.49878 6.52733 6.54502 7.00847 7.42952 7.51672 7.57118 7.79808 7.92382 8.10707 8.45738 9.07182 9.63285 11.13218 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.004736 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.898663 B = 5910.734649 C = 6301.599060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.034 3.966 10 C 0.054 3.946 11 N -0.509 5.509 12 C 0.041 3.959 13 C -0.125 4.125 14 C -0.119 4.119 15 C 0.077 3.923 16 H 0.052 0.948 17 C -0.120 4.120 18 H 0.104 0.896 19 C -0.100 4.100 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.170 4.170 23 C 0.364 3.636 24 O -0.457 6.457 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -17.240 -5.644 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.073 4.073 11 N -0.232 5.232 12 C -0.087 4.087 13 C -0.163 4.163 14 C -0.157 4.157 15 C -0.032 4.032 16 H 0.070 0.930 17 C -0.139 4.139 18 H 0.122 0.878 19 C -0.137 4.137 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.208 4.208 23 C 0.239 3.761 24 O -0.331 6.331 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.329 -17.293 -5.582 18.220 hybrid contribution 1.218 1.052 0.452 1.672 sum 2.547 -16.241 -5.130 17.221 Atomic orbital electron populations 1.69973 1.05988 1.26503 1.50759 1.24974 0.94803 0.99082 0.95346 0.86625 0.79845 0.83614 0.78090 1.20667 1.21227 1.19967 1.21213 0.92940 0.91181 1.50761 0.92933 1.18993 0.93821 0.89806 0.97745 1.22527 0.96756 0.89097 0.98908 1.64693 1.33218 1.01669 1.23659 1.23171 1.00533 0.94679 0.90285 1.22528 0.98612 0.95863 0.99273 1.22406 0.97840 0.97118 0.98343 1.22105 0.96105 0.91969 0.93042 0.92980 1.21800 0.96739 0.97656 0.97702 0.87776 1.21502 0.94682 1.02785 0.94737 1.21653 1.00162 0.97191 0.97576 1.21518 0.92902 0.98617 1.01940 1.22315 0.99052 1.02675 0.96717 1.24976 0.79526 0.82962 0.88645 1.90373 1.32632 1.57546 1.52518 0.93044 0.95800 0.96653 0.95883 0.92547 0.89796 0.94172 0.91057 0.91745 0.91836 0.91693 0.91820 0.88953 0.91356 0.91324 0.91137 0.91743 0.88528 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.88 5.13 -27.88 -0.14 0.74 16 10 C 0.05 1.15 4.69 -3.82 -0.02 1.14 16 11 N -0.51 -9.08 4.22 -222.57 -0.94 -10.02 16 12 C 0.04 0.68 6.11 -1.90 -0.01 0.67 16 13 C -0.12 -1.67 7.06 -24.87 -0.18 -1.84 16 14 C -0.12 -1.65 4.84 -25.38 -0.12 -1.77 16 15 C 0.08 1.20 1.82 -66.65 -0.12 1.08 16 16 H 0.05 0.90 7.68 -51.93 -0.40 0.50 16 17 C -0.12 -1.61 2.50 -91.38 -0.23 -1.84 16 18 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 19 C -0.10 -1.18 4.79 -26.63 -0.13 -1.31 16 20 C -0.13 -1.20 5.81 -26.77 -0.16 -1.36 16 21 C -0.11 -0.92 5.94 -26.64 -0.16 -1.08 16 22 C -0.17 -1.59 6.17 -27.49 -0.17 -1.76 16 23 C 0.36 4.63 5.85 -28.48 -0.17 4.46 16 24 O -0.46 -7.16 16.06 6.00 0.10 -7.07 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.02 0.50 7.70 -51.93 -0.40 0.10 16 29 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 30 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 31 H 0.04 0.68 7.73 -51.93 -0.40 0.28 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.84 5.68 -51.93 -0.29 0.55 16 36 H 0.06 0.74 6.16 -51.93 -0.32 0.42 16 37 H 0.09 1.29 7.82 -51.93 -0.41 0.89 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -30.73 331.72 -9.78 -40.50 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.64 Total: -2.58 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.01 Total: -16.41 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.20 Total: -36.14 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.10 Total: -7.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.73 -9.78 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093470530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.783 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds