Wall clock time and date at job start Mon Mar 30 2020 07:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99684 * 2 1 4 4 H 1.48498 * 109.47350 * 270.00195 * 3 2 1 5 5 H 1.48501 * 109.47208 * 30.00370 * 3 2 1 6 6 H 1.48504 * 109.46692 * 150.00295 * 3 2 1 7 7 C 1.37873 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46908 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.48538 * 110.99580 * 281.75631 * 11 10 9 13 13 C 1.54934 * 103.22226 * 200.27648 * 12 11 10 14 14 C 1.54594 * 102.92329 * 37.41958 * 13 12 11 15 15 C 1.47898 * 111.00035 * 164.36188 * 11 10 9 16 16 H 1.09000 * 110.08331 * 26.40101 * 15 11 10 17 17 C 1.52997 * 109.91640 * 265.19474 * 15 11 10 18 18 H 1.09004 * 109.62325 * 60.74510 * 17 15 11 19 19 C 1.53227 * 109.62811 * 300.16654 * 17 15 11 20 20 C 1.52960 * 109.40781 * 185.65589 * 19 17 15 21 21 C 1.52964 * 109.81172 * 63.59612 * 20 19 17 22 22 C 1.53221 * 109.40960 * 296.40446 * 21 20 19 23 23 C 1.51264 * 109.62656 * 181.12023 * 17 15 11 24 24 O 1.20762 * 120.85474 * 351.08832 * 23 17 15 25 25 H 0.96998 * 120.00366 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47526 * 60.00424 * 9 7 2 27 27 H 1.09006 * 109.47112 * 299.99822 * 9 7 2 28 28 H 1.09001 * 109.47434 * 59.99944 * 10 9 7 29 29 H 1.08997 * 109.47462 * 299.99743 * 10 9 7 30 30 H 1.08999 * 110.66600 * 81.84450 * 12 11 10 31 31 H 1.09002 * 110.66896 * 318.71449 * 12 11 10 32 32 H 1.08998 * 110.72509 * 279.05602 * 13 12 11 33 33 H 1.09004 * 110.72260 * 155.77852 * 13 12 11 34 34 H 1.08997 * 110.30848 * 96.95949 * 14 13 12 35 35 H 1.09000 * 110.30749 * 219.02536 * 14 13 12 36 36 H 1.08998 * 109.48466 * 305.63989 * 19 17 15 37 37 H 1.09001 * 109.48243 * 65.67695 * 19 17 15 38 38 H 1.08998 * 109.41122 * 303.49872 * 20 19 17 39 39 H 1.08995 * 109.35707 * 183.67144 * 20 19 17 40 40 H 1.09005 * 109.47871 * 176.41913 * 21 20 19 41 41 H 1.09000 * 109.48964 * 56.39238 * 21 20 19 42 42 H 1.09004 * 109.62529 * 294.91848 * 22 21 20 43 43 H 1.08998 * 109.78665 * 174.43550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 0.9996 -5.2544 1.3563 13 6 0.7500 -6.7820 1.2898 14 6 1.9283 -7.2876 0.4261 15 6 2.3975 -6.0580 -0.3734 16 1 3.4301 -5.8206 -0.1174 17 6 2.2836 -6.3370 -1.8734 18 1 2.5888 -5.4536 -2.4343 19 6 0.8355 -6.6977 -2.2212 20 6 0.7541 -7.1121 -3.6914 21 6 1.5808 -8.3787 -3.9195 22 6 3.0569 -8.0814 -3.6356 23 6 3.1718 -7.5046 -2.2419 24 8 3.9524 -7.9651 -1.4437 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.0697 -4.7208 1.5528 31 1 1.7469 -5.0191 2.1142 32 1 -0.2028 -6.9965 0.8060 33 1 0.7855 -7.2223 2.2864 34 1 2.7334 -7.6551 1.0624 35 1 1.5920 -8.0741 -0.2494 36 1 0.5054 -7.5240 -1.5918 37 1 0.1946 -5.8326 -2.0514 38 1 1.1430 -6.3082 -4.3164 39 1 -0.2856 -7.3056 -3.9551 40 1 1.4680 -8.7051 -4.9534 41 1 1.2331 -9.1654 -3.2500 42 1 3.4314 -7.3602 -4.3621 43 1 3.6377 -9.0015 -3.7001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093470530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:44 Heat of formation + Delta-G solvation = -76.863881 kcal Electronic energy + Delta-G solvation = -21068.345063 eV Core-core repulsion = 18111.452888 eV Total energy + Delta-G solvation = -2956.892175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59709 -39.52155 -37.17058 -35.65593 -33.70639 -32.80585 -30.41889 -30.08816 -28.00593 -26.29845 -24.28621 -22.97363 -22.52186 -21.68563 -21.16324 -19.52287 -18.50886 -17.08288 -16.76501 -16.62400 -16.43823 -16.22345 -15.59802 -15.44359 -15.00958 -14.90005 -14.47243 -14.00777 -13.86969 -13.69926 -13.44563 -13.40133 -13.06028 -12.90304 -12.69435 -12.45730 -12.40268 -12.06093 -11.98710 -11.82456 -11.68712 -11.52261 -11.44068 -11.37608 -11.23803 -11.19196 -10.54787 -10.22525 -9.31354 -8.20108 -6.31543 0.99543 1.39385 1.40709 1.51674 2.39550 2.83440 3.13114 3.41796 3.62499 3.63645 3.91471 3.92845 4.04961 4.11149 4.16211 4.31535 4.39411 4.44311 4.50524 4.56483 4.59624 4.61785 4.72703 4.85074 4.91869 4.97552 5.01301 5.04088 5.06933 5.13926 5.19381 5.24371 5.27429 5.33589 5.45085 5.52174 5.54454 5.64711 5.78627 6.05922 6.14602 6.31564 6.54831 6.85075 7.37504 8.91849 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.004736 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.898663 B = 5910.734649 C = 6301.599060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.046 3.954 10 C 0.072 3.928 11 N -0.512 5.512 12 C 0.034 3.966 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.074 3.926 16 H 0.031 0.969 17 C -0.123 4.123 18 H 0.094 0.906 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.106 4.106 22 C -0.164 4.164 23 C 0.369 3.631 24 O -0.490 6.490 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.010 1.010 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 -18.414 -6.772 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.009 3.991 10 C -0.056 4.056 11 N -0.236 5.236 12 C -0.094 4.094 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.034 4.034 16 H 0.049 0.951 17 C -0.142 4.142 18 H 0.112 0.888 19 C -0.131 4.131 20 C -0.163 4.163 21 C -0.143 4.143 22 C -0.201 4.201 23 C 0.246 3.754 24 O -0.366 6.366 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.008 0.992 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.752 -18.483 -6.720 19.745 hybrid contribution 1.053 1.427 0.821 1.955 sum 2.806 -17.056 -5.899 18.264 Atomic orbital electron populations 1.70102 1.07714 1.27763 1.51320 1.25906 0.95721 1.03105 0.94566 0.85472 0.78573 0.78547 0.78587 1.19577 1.20572 1.19074 1.21612 0.93331 0.92477 1.51099 0.92649 1.18780 0.93903 0.91404 0.95063 1.22141 0.95420 0.89509 0.98520 1.64639 1.33196 1.01109 1.24641 1.23231 0.99523 0.97247 0.89384 1.22484 0.98853 0.92907 1.00654 1.22354 0.97882 0.96406 0.98310 1.22169 0.94414 0.91734 0.95123 0.95103 1.21835 0.98389 0.98113 0.95881 0.88782 1.21435 0.92784 1.01867 0.97051 1.21637 1.01388 0.97941 0.95297 1.21516 0.91400 0.97796 1.03605 1.22338 1.00338 1.03256 0.94176 1.25282 0.78187 0.81999 0.89940 1.90370 1.33847 1.58455 1.53919 0.92713 0.98524 0.99188 0.96589 0.92527 0.91275 0.94880 0.89960 0.89479 0.91984 0.90311 0.91220 0.91570 0.91379 0.90040 0.88577 0.91394 0.86944 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 9 C 0.05 2.51 5.13 29.85 0.15 2.66 16 10 C 0.07 3.20 4.69 86.30 0.40 3.61 16 11 N -0.51 -18.94 4.22 -858.08 -3.63 -22.57 16 12 C 0.03 1.15 6.11 86.65 0.53 1.68 16 13 C -0.11 -2.84 7.06 31.80 0.22 -2.62 16 14 C -0.11 -2.98 4.84 31.47 0.15 -2.83 16 15 C 0.07 2.35 1.82 45.06 0.08 2.43 16 16 H 0.03 1.10 7.68 -2.39 -0.02 1.08 16 17 C -0.12 -3.27 2.50 -11.29 -0.03 -3.30 16 18 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 19 C -0.09 -2.15 4.79 30.66 0.15 -2.00 16 20 C -0.13 -2.06 5.81 30.57 0.18 -1.88 16 21 C -0.11 -1.37 5.94 30.66 0.18 -1.19 16 22 C -0.16 -2.60 6.17 30.10 0.19 -2.41 16 23 C 0.37 8.91 5.85 29.46 0.17 9.08 16 24 O -0.49 -14.97 16.06 -1.46 -0.02 -15.00 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H -0.01 -0.60 7.66 -2.38 -0.02 -0.62 16 28 H 0.02 0.72 7.70 -2.39 -0.02 0.70 16 29 H 0.06 2.47 8.00 -2.39 -0.02 2.45 16 30 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 31 H 0.03 1.16 7.73 -2.39 -0.02 1.14 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.90 5.68 -2.39 -0.01 1.89 16 36 H 0.07 1.49 6.16 -2.39 -0.01 1.48 16 37 H 0.07 1.87 7.82 -2.39 -0.02 1.85 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -67.71 331.72 2.70 -65.01 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.96 Total: 10.12 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.08 Total: -27.59 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -3.34 Total: -79.28 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.02 Total: -15.00 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.71 2.70 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093470530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.852 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds