Wall clock time and date at job start Mon Mar 30 2020 07:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46953 * 180.02562 * 10 9 7 12 12 C 1.47446 * 111.00411 * 69.86920 * 11 10 9 13 13 C 1.54319 * 107.23003 * 123.25515 * 12 11 10 14 14 C 1.55150 * 103.01810 * 22.28792 * 13 12 11 15 15 C 1.47845 * 110.99645 * 190.71956 * 11 10 9 16 16 H 1.08990 * 110.37395 * 332.45830 * 15 11 10 17 17 C 1.53000 * 110.37680 * 94.80360 * 15 11 10 18 18 H 1.08998 * 109.62269 * 304.99893 * 17 15 11 19 19 C 1.53226 * 109.62631 * 184.61507 * 17 15 11 20 20 C 1.52952 * 109.40505 * 185.65553 * 19 17 15 21 21 C 1.52961 * 109.81832 * 63.60420 * 20 19 17 22 22 C 1.53235 * 109.40222 * 296.40276 * 21 20 19 23 23 C 1.51273 * 109.62333 * 65.37871 * 17 15 11 24 24 O 1.20755 * 120.85602 * 351.04069 * 23 17 15 25 25 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 27 27 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 28 28 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 29 29 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 30 30 H 1.08999 * 109.88825 * 242.66255 * 12 11 10 31 31 H 1.08996 * 109.88480 * 3.85578 * 12 11 10 32 32 H 1.09003 * 110.70133 * 140.66511 * 13 12 11 33 33 H 1.08996 * 110.71122 * 263.72912 * 13 12 11 34 34 H 1.09006 * 110.98892 * 82.43807 * 14 13 12 35 35 H 1.08998 * 110.98918 * 206.25033 * 14 13 12 36 36 H 1.09004 * 109.48594 * 305.64296 * 19 17 15 37 37 H 1.08999 * 109.48131 * 65.68029 * 19 17 15 38 38 H 1.09007 * 109.41490 * 183.70376 * 20 19 17 39 39 H 1.08996 * 109.41697 * 303.49553 * 20 19 17 40 40 H 1.08996 * 109.48379 * 56.37654 * 21 20 19 41 41 H 1.08992 * 109.48906 * 176.41111 * 21 20 19 42 42 H 1.08995 * 109.62815 * 174.34206 * 22 21 20 43 43 H 1.09005 * 109.62483 * 294.71938 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0190 -2.1627 1.2925 13 6 6.9374 -3.2728 1.8455 14 6 7.3262 -4.0708 0.5730 15 6 6.0203 -3.9928 -0.2565 16 1 5.3105 -4.7477 0.0815 17 6 6.3234 -4.1735 -1.7453 18 1 5.4317 -3.9482 -2.3303 19 6 6.7613 -5.6178 -2.0097 20 6 7.1975 -5.7574 -3.4691 21 6 8.4234 -4.8805 -3.7301 22 6 8.0480 -3.4083 -3.5303 23 6 7.4458 -3.2443 -2.1516 24 8 7.8531 -2.3966 -1.3941 25 1 -0.4849 0.8401 -0.0004 26 1 3.8746 -0.6808 -0.8905 27 1 3.8752 -0.6797 0.8895 28 1 3.6585 -3.1502 0.8904 29 1 3.6579 -3.1505 -0.8897 30 1 6.5913 -1.2468 1.1457 31 1 5.1971 -1.9821 1.9853 32 1 7.8216 -2.8426 2.3158 33 1 6.3969 -3.9050 2.5499 34 1 8.1518 -3.5902 0.0479 35 1 7.5710 -5.1039 0.8197 36 1 7.5955 -5.8705 -1.3551 37 1 5.9278 -6.2921 -1.8134 38 1 7.4465 -6.7985 -3.6748 39 1 6.3829 -5.4449 -4.1223 40 1 9.2182 -5.1505 -3.0349 41 1 8.7679 -5.0324 -4.7529 42 1 8.9401 -2.7881 -3.6166 43 1 7.3205 -3.1103 -4.2853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093470532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:53 Heat of formation + Delta-G solvation = -50.129321 kcal Electronic energy + Delta-G solvation = -21239.264919 eV Core-core repulsion = 18283.532042 eV Total energy + Delta-G solvation = -2955.732877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47467 -38.00560 -36.35120 -33.67716 -32.15499 -31.70863 -29.39106 -28.73731 -26.93032 -24.37426 -22.96867 -21.91895 -21.41485 -20.40923 -19.35111 -18.60422 -16.85280 -16.06350 -15.79074 -15.22284 -14.96286 -14.60765 -14.29853 -14.15085 -13.79018 -13.37883 -13.19292 -12.94015 -12.69613 -12.39645 -12.23375 -12.14118 -11.74275 -11.54101 -11.33903 -11.17199 -10.96705 -10.85332 -10.81317 -10.67838 -10.38090 -10.32326 -10.02909 -9.68770 -9.61472 -9.15086 -8.98415 -8.48886 -7.67261 -6.00733 -3.98326 2.24619 3.36696 3.43257 3.50835 4.14613 4.27208 4.50919 4.61244 4.65827 4.75544 4.92546 4.98262 5.08656 5.18860 5.28704 5.33000 5.34626 5.41887 5.46957 5.62349 5.69773 5.72451 5.75997 5.79777 5.88460 5.93058 6.03236 6.05410 6.12771 6.18087 6.19261 6.22087 6.39338 6.49702 6.60588 6.84931 7.27134 7.41227 7.66337 7.73418 7.82805 7.94173 8.57416 9.03397 9.62694 11.12661 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.005235 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.167442 B = 5347.303339 C = 5653.522286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.005 4.005 10 C 0.066 3.934 11 N -0.521 5.521 12 C 0.053 3.947 13 C -0.138 4.138 14 C -0.133 4.133 15 C 0.083 3.917 16 H 0.056 0.944 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.172 4.172 23 C 0.366 3.634 24 O -0.424 6.424 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.015 0.985 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.053 -12.466 -5.052 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.043 4.043 10 C -0.061 4.061 11 N -0.245 5.245 12 C -0.075 4.075 13 C -0.176 4.176 14 C -0.171 4.171 15 C -0.025 4.025 16 H 0.074 0.926 17 C -0.141 4.141 18 H 0.123 0.877 19 C -0.147 4.147 20 C -0.162 4.162 21 C -0.149 4.149 22 C -0.210 4.210 23 C 0.239 3.761 24 O -0.295 6.295 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.260 -11.538 -5.022 22.176 hybrid contribution -0.183 0.366 0.509 0.653 sum 18.078 -11.172 -4.512 21.725 Atomic orbital electron populations 1.69920 1.06301 1.26843 1.51415 1.24980 0.94684 0.99138 0.94505 0.86766 0.80399 0.83486 0.78602 1.20291 1.21523 1.18890 1.21109 0.89531 0.94407 1.50777 0.91219 1.19530 0.96165 0.91817 0.96778 1.22301 0.84318 1.00173 0.99353 1.63449 1.09157 1.20678 1.31198 1.22669 0.97352 0.97765 0.89701 1.22718 0.99688 0.97909 0.97288 1.23006 0.98602 0.99236 0.96244 1.22332 0.95673 0.91490 0.93039 0.92648 1.21829 0.99272 0.95174 0.97859 0.87729 1.21570 1.01639 0.94900 0.96590 1.21577 0.98048 0.99850 0.96714 1.21491 0.98176 0.93179 1.02075 1.22363 1.02554 0.98389 0.97721 1.24491 0.82033 0.81810 0.87787 1.90352 1.56481 1.29436 1.53261 0.92798 0.96363 0.96685 0.95631 0.91986 0.91082 0.92592 0.91454 0.92179 0.89079 0.92180 0.91531 0.90926 0.91415 0.91247 0.91731 0.91153 0.89845 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.13 4.07 -27.88 -0.11 -0.24 16 10 C 0.07 1.39 4.48 -3.82 -0.02 1.37 16 11 N -0.52 -9.62 3.89 -223.39 -0.87 -10.49 16 12 C 0.05 0.93 6.21 -2.83 -0.02 0.92 16 13 C -0.14 -1.94 6.94 -24.90 -0.17 -2.12 16 14 C -0.13 -1.78 5.29 -24.59 -0.13 -1.91 16 15 C 0.08 1.23 2.09 -66.19 -0.14 1.09 16 16 H 0.06 0.81 7.81 -51.93 -0.41 0.40 16 17 C -0.12 -1.53 2.51 -91.37 -0.23 -1.76 16 18 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 19 C -0.11 -0.99 5.17 -26.64 -0.14 -1.13 16 20 C -0.12 -0.93 5.81 -26.78 -0.16 -1.08 16 21 C -0.11 -0.84 5.94 -26.63 -0.16 -1.00 16 22 C -0.17 -1.69 6.16 -27.45 -0.17 -1.86 16 23 C 0.37 4.86 5.91 -28.44 -0.17 4.69 16 24 O -0.42 -7.14 13.85 6.00 0.08 -7.06 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 27 H 0.01 0.38 6.20 -51.93 -0.32 0.06 16 28 H 0.03 0.54 7.96 -51.92 -0.41 0.13 16 29 H 0.06 1.28 8.07 -51.93 -0.42 0.87 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.04 6.91 -51.93 -0.36 0.68 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.32 5.09 -51.93 -0.26 1.06 16 35 H 0.06 0.68 7.96 -51.93 -0.41 0.26 16 36 H 0.07 0.58 7.32 -51.93 -0.38 0.20 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -32.68 326.38 -9.41 -42.08 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.61 Total: -3.12 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.04 Total: -16.65 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.10 Total: -38.18 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.08 Total: -7.06 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.68 -9.41 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093470532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.045 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds