Wall clock time and date at job start Mon Mar 30 2020 07:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46953 * 180.02562 * 10 9 7 12 12 C 1.47446 * 111.00411 * 69.86920 * 11 10 9 13 13 C 1.54319 * 107.23003 * 123.25515 * 12 11 10 14 14 C 1.55150 * 103.01810 * 22.28792 * 13 12 11 15 15 C 1.47845 * 110.99645 * 190.71956 * 11 10 9 16 16 H 1.08990 * 110.37395 * 332.45830 * 15 11 10 17 17 C 1.53000 * 110.37680 * 94.80360 * 15 11 10 18 18 H 1.08998 * 109.62269 * 304.99893 * 17 15 11 19 19 C 1.53226 * 109.62631 * 184.61507 * 17 15 11 20 20 C 1.52952 * 109.40505 * 185.65553 * 19 17 15 21 21 C 1.52961 * 109.81832 * 63.60420 * 20 19 17 22 22 C 1.53235 * 109.40222 * 296.40276 * 21 20 19 23 23 C 1.51273 * 109.62333 * 65.37871 * 17 15 11 24 24 O 1.20755 * 120.85602 * 351.04069 * 23 17 15 25 25 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 27 27 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 28 28 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 29 29 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 30 30 H 1.08999 * 109.88825 * 242.66255 * 12 11 10 31 31 H 1.08996 * 109.88480 * 3.85578 * 12 11 10 32 32 H 1.09003 * 110.70133 * 140.66511 * 13 12 11 33 33 H 1.08996 * 110.71122 * 263.72912 * 13 12 11 34 34 H 1.09006 * 110.98892 * 82.43807 * 14 13 12 35 35 H 1.08998 * 110.98918 * 206.25033 * 14 13 12 36 36 H 1.09004 * 109.48594 * 305.64296 * 19 17 15 37 37 H 1.08999 * 109.48131 * 65.68029 * 19 17 15 38 38 H 1.09007 * 109.41490 * 183.70376 * 20 19 17 39 39 H 1.08996 * 109.41697 * 303.49553 * 20 19 17 40 40 H 1.08996 * 109.48379 * 56.37654 * 21 20 19 41 41 H 1.08992 * 109.48906 * 176.41111 * 21 20 19 42 42 H 1.08995 * 109.62815 * 174.34206 * 22 21 20 43 43 H 1.09005 * 109.62483 * 294.71938 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0190 -2.1627 1.2925 13 6 6.9374 -3.2728 1.8455 14 6 7.3262 -4.0708 0.5730 15 6 6.0203 -3.9928 -0.2565 16 1 5.3105 -4.7477 0.0815 17 6 6.3234 -4.1735 -1.7453 18 1 5.4317 -3.9482 -2.3303 19 6 6.7613 -5.6178 -2.0097 20 6 7.1975 -5.7574 -3.4691 21 6 8.4234 -4.8805 -3.7301 22 6 8.0480 -3.4083 -3.5303 23 6 7.4458 -3.2443 -2.1516 24 8 7.8531 -2.3966 -1.3941 25 1 -0.4849 0.8401 -0.0004 26 1 3.8746 -0.6808 -0.8905 27 1 3.8752 -0.6797 0.8895 28 1 3.6585 -3.1502 0.8904 29 1 3.6579 -3.1505 -0.8897 30 1 6.5913 -1.2468 1.1457 31 1 5.1971 -1.9821 1.9853 32 1 7.8216 -2.8426 2.3158 33 1 6.3969 -3.9050 2.5499 34 1 8.1518 -3.5902 0.0479 35 1 7.5710 -5.1039 0.8197 36 1 7.5955 -5.8705 -1.3551 37 1 5.9278 -6.2921 -1.8134 38 1 7.4465 -6.7985 -3.6748 39 1 6.3829 -5.4449 -4.1223 40 1 9.2182 -5.1505 -3.0349 41 1 8.7679 -5.0324 -4.7529 42 1 8.9401 -2.7881 -3.6166 43 1 7.3205 -3.1103 -4.2853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093470532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:52 Heat of formation + Delta-G solvation = -69.900069 kcal Electronic energy + Delta-G solvation = -21240.122243 eV Core-core repulsion = 18283.532042 eV Total energy + Delta-G solvation = -2956.590201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54309 -39.27501 -37.20183 -35.62879 -33.81685 -32.91576 -30.75725 -30.01757 -27.99525 -26.22676 -23.92974 -23.05622 -22.67243 -21.63710 -20.83087 -19.57782 -19.01952 -17.26376 -16.88550 -16.36838 -16.29521 -16.10146 -15.57369 -15.22515 -15.08820 -14.84025 -14.62355 -14.16797 -13.91130 -13.78235 -13.43060 -13.35513 -13.11163 -13.02547 -12.61077 -12.53224 -12.09375 -12.03320 -11.93817 -11.80633 -11.65349 -11.54704 -11.50372 -11.42145 -11.31524 -11.18776 -10.80437 -9.99683 -9.12142 -8.34003 -6.37410 1.23614 1.31439 1.32337 1.46095 2.32180 3.01079 3.01695 3.22189 3.67846 3.78437 3.92164 3.97748 4.08559 4.11773 4.23484 4.38781 4.39881 4.43893 4.44282 4.51054 4.59104 4.67890 4.74549 4.83612 4.93027 4.95402 4.99552 5.03431 5.07575 5.15204 5.17082 5.20749 5.25727 5.30646 5.36798 5.44726 5.46970 5.52855 5.58303 6.13895 6.27279 6.31593 6.69397 6.82665 7.27650 8.82575 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.005235 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.167442 B = 5347.303339 C = 5653.522286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.036 0.964 9 C 0.004 3.996 10 C 0.081 3.919 11 N -0.533 5.533 12 C 0.048 3.952 13 C -0.131 4.131 14 C -0.124 4.124 15 C 0.078 3.922 16 H 0.058 0.942 17 C -0.124 4.124 18 H 0.093 0.907 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.106 4.106 22 C -0.169 4.169 23 C 0.362 3.638 24 O -0.467 6.467 25 H 0.268 0.732 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.283 -13.538 -5.805 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.034 4.034 10 C -0.047 4.047 11 N -0.257 5.257 12 C -0.080 4.080 13 C -0.169 4.169 14 C -0.162 4.162 15 C -0.030 4.030 16 H 0.076 0.924 17 C -0.143 4.143 18 H 0.111 0.889 19 C -0.141 4.141 20 C -0.159 4.159 21 C -0.144 4.144 22 C -0.207 4.207 23 C 0.238 3.762 24 O -0.341 6.341 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.499 -12.639 -5.789 24.768 hybrid contribution -0.933 0.649 0.737 1.355 sum 19.566 -11.990 -5.051 23.497 Atomic orbital electron populations 1.70044 1.07999 1.28180 1.52506 1.25865 0.95529 1.03049 0.94030 0.85713 0.79205 0.78848 0.79199 1.19229 1.20375 1.18183 1.21388 0.91637 0.93318 1.50576 0.94536 1.19380 0.93516 0.94521 0.95978 1.21967 0.86497 0.97260 0.98995 1.63397 1.06945 1.23517 1.31794 1.22668 0.97326 0.98748 0.89290 1.22691 0.99480 0.96919 0.97840 1.22958 0.97332 1.00667 0.95193 1.22516 0.96232 0.89281 0.95014 0.92419 1.21883 0.98780 0.97625 0.96046 0.88897 1.21574 1.02156 0.92197 0.98128 1.21588 0.97955 1.01115 0.95290 1.21508 0.98283 0.91105 1.03473 1.22376 1.02471 1.00420 0.95423 1.25048 0.81596 0.80713 0.88808 1.90342 1.57927 1.31026 1.54810 0.92342 0.97034 0.97136 0.96333 0.92028 0.92488 0.94245 0.90066 0.91074 0.89927 0.89256 0.90730 0.90220 0.89271 0.91294 0.91354 0.89080 0.89838 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.95 47.07 27.47 68.60 1.88 48.96 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 7 C -0.53 -31.98 9.66 25.60 0.25 -31.74 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C 0.00 0.20 4.07 29.85 0.12 0.32 16 10 C 0.08 3.47 4.48 86.30 0.39 3.86 16 11 N -0.53 -19.71 3.89 -860.66 -3.35 -23.06 16 12 C 0.05 1.68 6.21 86.65 0.54 2.22 16 13 C -0.13 -3.51 6.94 31.78 0.22 -3.28 16 14 C -0.12 -3.07 5.29 31.98 0.17 -2.90 16 15 C 0.08 2.20 2.09 45.39 0.09 2.30 16 16 H 0.06 1.61 7.81 -2.39 -0.02 1.59 16 17 C -0.12 -2.95 2.51 -11.28 -0.03 -2.97 16 18 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 19 C -0.10 -1.59 5.17 30.65 0.16 -1.43 16 20 C -0.12 -1.42 5.81 30.57 0.18 -1.24 16 21 C -0.11 -1.25 5.94 30.66 0.18 -1.07 16 22 C -0.17 -2.99 6.16 30.13 0.19 -2.80 16 23 C 0.36 9.25 5.91 29.49 0.17 9.42 16 24 O -0.47 -15.58 13.85 -1.44 -0.02 -15.60 16 25 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 27 H 0.01 0.54 6.20 -2.39 -0.01 0.53 16 28 H 0.02 0.81 7.96 -2.38 -0.02 0.79 16 29 H 0.06 2.61 8.07 -2.39 -0.02 2.59 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.49 6.91 -2.39 -0.02 1.47 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.26 5.09 -2.38 -0.01 2.25 16 35 H 0.09 1.71 7.96 -2.39 -0.02 1.69 16 36 H 0.07 1.05 7.32 -2.39 -0.02 1.04 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -71.94 326.38 2.81 -69.13 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.90 Total: 9.00 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.09 Total: -28.09 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.05 Total: -83.40 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.02 Total: -15.60 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.88 Total: 48.96 kcal Total: -71.94 2.81 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093470532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.770 kcal (2) G-P(sol) polarization free energy of solvation -71.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds