Wall clock time and date at job start Mon Mar 30 2020 07:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48504 * 109.47169 * 269.99989 * 3 2 1 5 5 H 1.48508 * 109.47229 * 30.00076 * 3 2 1 6 6 H 1.48502 * 109.47294 * 149.99926 * 3 2 1 7 7 C 1.37878 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46898 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47202 * 179.97438 * 10 9 7 12 12 C 1.47445 * 110.99519 * 74.73647 * 11 10 9 13 13 C 1.54320 * 107.23168 * 123.26142 * 12 11 10 14 14 C 1.55139 * 103.02065 * 22.27961 * 13 12 11 15 15 C 1.47839 * 110.99964 * 195.57872 * 11 10 9 16 16 H 1.09000 * 110.37656 * 332.57077 * 15 11 10 17 17 C 1.52994 * 110.37666 * 94.80782 * 15 11 10 18 18 H 1.09004 * 109.77725 * 297.60039 * 17 15 11 19 19 C 1.53232 * 109.62845 * 58.07559 * 17 15 11 20 20 C 1.52955 * 109.40751 * 174.34221 * 19 17 15 21 21 C 1.52955 * 109.81983 * 296.40632 * 20 19 17 22 22 C 1.53230 * 109.41657 * 63.58853 * 21 20 19 23 23 C 1.51268 * 109.63006 * 177.12474 * 17 15 11 24 24 O 1.20760 * 120.84947 * 8.94972 * 23 17 15 25 25 H 0.97005 * 119.99348 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47115 * 60.00151 * 9 7 2 27 27 H 1.09003 * 109.46901 * 299.99507 * 9 7 2 28 28 H 1.09001 * 109.47746 * 59.99513 * 10 9 7 29 29 H 1.09001 * 109.47003 * 299.99852 * 10 9 7 30 30 H 1.09010 * 109.88418 * 242.66377 * 12 11 10 31 31 H 1.08996 * 109.89304 * 3.68739 * 12 11 10 32 32 H 1.09006 * 110.70309 * 140.65967 * 13 12 11 33 33 H 1.08991 * 110.70400 * 263.72064 * 13 12 11 34 34 H 1.09000 * 110.99025 * 206.25918 * 14 13 12 35 35 H 1.08999 * 110.98955 * 82.43564 * 14 13 12 36 36 H 1.09004 * 109.47898 * 54.36292 * 19 17 15 37 37 H 1.09001 * 109.49242 * 294.33329 * 19 17 15 38 38 H 1.09000 * 109.41522 * 176.29805 * 20 19 17 39 39 H 1.09002 * 109.35181 * 56.47478 * 20 19 17 40 40 H 1.09000 * 109.48458 * 183.57113 * 21 20 19 41 41 H 1.08999 * 109.48102 * 303.60735 * 21 20 19 42 42 H 1.09000 * 109.62725 * 65.09672 * 22 21 20 43 43 H 1.09000 * 109.63070 * 185.66763 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5105 -4.9343 0.0001 12 6 0.9321 -5.2110 -1.3276 13 6 1.4711 -6.5831 -1.7842 14 6 1.8721 -7.2631 -0.4487 15 6 2.3971 -6.0578 0.3708 16 1 3.4285 -5.8328 0.0994 17 6 2.2926 -6.3468 1.8695 18 1 2.6273 -5.4782 2.4368 19 6 0.8389 -6.6689 2.2315 20 6 0.7627 -7.0938 3.6989 21 6 1.5552 -8.3855 3.9065 22 6 3.0359 -8.1283 3.6076 23 6 3.1511 -7.5425 2.2176 24 8 3.9094 -8.0176 1.4066 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8898 28 1 2.8718 -3.6044 0.8894 29 1 2.8717 -3.6044 -0.8905 30 1 -0.1554 -5.2440 -1.2588 31 1 1.2354 -4.4373 -2.0329 32 1 0.6920 -7.1546 -2.2890 33 1 2.3383 -6.4600 -2.4327 34 1 2.6593 -8.0002 -0.6069 35 1 1.0062 -7.7160 0.0342 36 1 0.4779 -7.4799 1.5989 37 1 0.2209 -5.7844 2.0766 38 1 -0.2788 -7.2595 3.9745 39 1 1.1824 -6.3066 4.3252 40 1 1.4452 -8.7175 4.9389 41 1 1.1772 -9.1559 3.2345 42 1 3.4396 -7.4248 4.3357 43 1 3.5878 -9.0670 3.6564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093470533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:57 Heat of formation + Delta-G solvation = -58.656165 kcal Electronic energy + Delta-G solvation = -21040.940048 eV Core-core repulsion = 18084.837419 eV Total energy + Delta-G solvation = -2956.102629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43755 -38.27029 -36.25867 -33.66084 -32.04808 -31.63760 -29.28970 -28.37376 -26.90130 -24.32449 -23.32937 -21.74790 -21.35183 -20.45727 -19.39949 -18.53028 -16.40402 -16.18093 -15.65129 -15.13984 -14.96200 -14.70866 -14.47045 -14.13772 -14.03984 -13.22365 -13.07614 -12.95433 -12.56397 -12.42009 -12.19043 -11.98239 -11.62871 -11.41452 -11.14442 -11.02132 -10.95798 -10.83043 -10.69887 -10.65034 -10.49087 -10.39312 -10.09417 -9.78714 -9.43188 -9.18144 -9.07600 -8.32286 -7.68373 -5.97889 -4.00168 2.00328 3.32642 3.38923 3.42175 3.92977 4.45253 4.63411 4.69573 4.73042 4.76794 4.84978 5.01216 5.18003 5.27799 5.28079 5.38099 5.41593 5.44774 5.54108 5.65400 5.69655 5.76384 5.83727 5.95755 6.00889 6.05673 6.10648 6.19267 6.20350 6.24911 6.33318 6.44889 6.48690 6.55412 6.61039 7.01980 7.49684 7.55309 7.60002 7.81492 7.93343 8.11936 8.46174 9.07477 9.63460 11.13382 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.004760 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.233495 B = 5880.585721 C = 6335.313098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C 0.058 3.942 11 N -0.522 5.522 12 C 0.048 3.952 13 C -0.142 4.142 14 C -0.127 4.127 15 C 0.084 3.916 16 H 0.054 0.946 17 C -0.119 4.119 18 H 0.104 0.896 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.169 4.169 23 C 0.365 3.635 24 O -0.458 6.458 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -17.210 5.594 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.069 4.069 11 N -0.246 5.246 12 C -0.080 4.080 13 C -0.180 4.180 14 C -0.165 4.165 15 C -0.025 4.025 16 H 0.072 0.928 17 C -0.139 4.139 18 H 0.122 0.878 19 C -0.138 4.138 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.207 4.207 23 C 0.240 3.760 24 O -0.331 6.331 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.640 -17.275 5.521 18.210 hybrid contribution 1.144 1.073 -0.515 1.651 sum 2.784 -16.202 5.006 17.185 Atomic orbital electron populations 1.69980 1.05991 1.26484 1.50761 1.24977 0.94804 0.99084 0.95354 0.86627 0.79860 0.83621 0.78066 1.20730 1.21206 1.19934 1.21216 0.92936 0.91182 1.50753 0.92933 1.19027 0.93850 0.89877 0.97754 1.22524 0.96608 0.88964 0.98761 1.63488 1.32683 1.02031 1.26415 1.22755 1.00048 0.95249 0.89952 1.22794 1.00727 0.97158 0.97359 1.22845 1.00928 0.97283 0.95446 1.22267 0.95934 0.91414 0.92844 0.92761 1.21748 0.96974 0.97392 0.97762 0.87774 1.21540 0.94573 1.02989 0.94718 1.21652 1.00366 0.96956 0.97609 1.21521 0.92975 0.98577 1.01920 1.22316 0.99051 1.02630 0.96730 1.24960 0.78851 0.83549 0.88624 1.90360 1.32755 1.58485 1.51531 0.93053 0.96635 0.95816 0.92588 0.96050 0.90968 0.92334 0.91337 0.91971 0.90864 0.90732 0.91734 0.88909 0.91317 0.91374 0.91150 0.91720 0.88519 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.84 5.07 -27.88 -0.14 0.70 16 10 C 0.06 1.24 4.51 -3.82 -0.02 1.23 16 11 N -0.52 -9.34 4.12 -223.38 -0.92 -10.27 16 12 C 0.05 0.80 6.29 -2.83 -0.02 0.78 16 13 C -0.14 -1.97 6.94 -24.91 -0.17 -2.14 16 14 C -0.13 -1.77 5.57 -24.59 -0.14 -1.90 16 15 C 0.08 1.31 1.77 -66.19 -0.12 1.19 16 16 H 0.05 0.94 7.74 -51.93 -0.40 0.53 16 17 C -0.12 -1.59 2.56 -91.38 -0.23 -1.83 16 18 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 19 C -0.10 -1.20 4.80 -26.63 -0.13 -1.33 16 20 C -0.13 -1.20 5.81 -26.78 -0.16 -1.35 16 21 C -0.11 -0.92 5.94 -26.64 -0.16 -1.07 16 22 C -0.17 -1.57 6.17 -27.48 -0.17 -1.74 16 23 C 0.37 4.60 6.23 -28.48 -0.18 4.42 16 24 O -0.46 -7.09 15.54 6.00 0.09 -7.00 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.17 8.00 -51.93 -0.42 0.76 16 29 H 0.02 0.46 7.81 -51.93 -0.41 0.06 16 30 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.04 7.14 -51.93 -0.37 0.67 16 35 H 0.07 0.96 5.68 -51.93 -0.29 0.67 16 36 H 0.06 0.75 5.83 -51.93 -0.30 0.44 16 37 H 0.09 1.30 7.80 -51.93 -0.41 0.90 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -30.72 330.26 -9.72 -40.44 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.55 Total: -2.13 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.04 Total: -16.58 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.18 Total: -36.41 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.09 Total: -7.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.72 -9.72 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093470533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.220 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds