Wall clock time and date at job start Mon Mar 30 2020 07:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48504 * 109.47169 * 269.99989 * 3 2 1 5 5 H 1.48508 * 109.47229 * 30.00076 * 3 2 1 6 6 H 1.48502 * 109.47294 * 149.99926 * 3 2 1 7 7 C 1.37878 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46898 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47202 * 179.97438 * 10 9 7 12 12 C 1.47445 * 110.99519 * 74.73647 * 11 10 9 13 13 C 1.54320 * 107.23168 * 123.26142 * 12 11 10 14 14 C 1.55139 * 103.02065 * 22.27961 * 13 12 11 15 15 C 1.47839 * 110.99964 * 195.57872 * 11 10 9 16 16 H 1.09000 * 110.37656 * 332.57077 * 15 11 10 17 17 C 1.52994 * 110.37666 * 94.80782 * 15 11 10 18 18 H 1.09004 * 109.77725 * 297.60039 * 17 15 11 19 19 C 1.53232 * 109.62845 * 58.07559 * 17 15 11 20 20 C 1.52955 * 109.40751 * 174.34221 * 19 17 15 21 21 C 1.52955 * 109.81983 * 296.40632 * 20 19 17 22 22 C 1.53230 * 109.41657 * 63.58853 * 21 20 19 23 23 C 1.51268 * 109.63006 * 177.12474 * 17 15 11 24 24 O 1.20760 * 120.84947 * 8.94972 * 23 17 15 25 25 H 0.97005 * 119.99348 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47115 * 60.00151 * 9 7 2 27 27 H 1.09003 * 109.46901 * 299.99507 * 9 7 2 28 28 H 1.09001 * 109.47746 * 59.99513 * 10 9 7 29 29 H 1.09001 * 109.47003 * 299.99852 * 10 9 7 30 30 H 1.09010 * 109.88418 * 242.66377 * 12 11 10 31 31 H 1.08996 * 109.89304 * 3.68739 * 12 11 10 32 32 H 1.09006 * 110.70309 * 140.65967 * 13 12 11 33 33 H 1.08991 * 110.70400 * 263.72064 * 13 12 11 34 34 H 1.09000 * 110.99025 * 206.25918 * 14 13 12 35 35 H 1.08999 * 110.98955 * 82.43564 * 14 13 12 36 36 H 1.09004 * 109.47898 * 54.36292 * 19 17 15 37 37 H 1.09001 * 109.49242 * 294.33329 * 19 17 15 38 38 H 1.09000 * 109.41522 * 176.29805 * 20 19 17 39 39 H 1.09002 * 109.35181 * 56.47478 * 20 19 17 40 40 H 1.09000 * 109.48458 * 183.57113 * 21 20 19 41 41 H 1.08999 * 109.48102 * 303.60735 * 21 20 19 42 42 H 1.09000 * 109.62725 * 65.09672 * 22 21 20 43 43 H 1.09000 * 109.63070 * 185.66763 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5105 -4.9343 0.0001 12 6 0.9321 -5.2110 -1.3276 13 6 1.4711 -6.5831 -1.7842 14 6 1.8721 -7.2631 -0.4487 15 6 2.3971 -6.0578 0.3708 16 1 3.4285 -5.8328 0.0994 17 6 2.2926 -6.3468 1.8695 18 1 2.6273 -5.4782 2.4368 19 6 0.8389 -6.6689 2.2315 20 6 0.7627 -7.0938 3.6989 21 6 1.5552 -8.3855 3.9065 22 6 3.0359 -8.1283 3.6076 23 6 3.1511 -7.5425 2.2176 24 8 3.9094 -8.0176 1.4066 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8898 28 1 2.8718 -3.6044 0.8894 29 1 2.8717 -3.6044 -0.8905 30 1 -0.1554 -5.2440 -1.2588 31 1 1.2354 -4.4373 -2.0329 32 1 0.6920 -7.1546 -2.2890 33 1 2.3383 -6.4600 -2.4327 34 1 2.6593 -8.0002 -0.6069 35 1 1.0062 -7.7160 0.0342 36 1 0.4779 -7.4799 1.5989 37 1 0.2209 -5.7844 2.0766 38 1 -0.2788 -7.2595 3.9745 39 1 1.1824 -6.3066 4.3252 40 1 1.4452 -8.7175 4.9389 41 1 1.1772 -9.1559 3.2345 42 1 3.4396 -7.4248 4.3357 43 1 3.5878 -9.0670 3.6564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093470533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:57 Heat of formation + Delta-G solvation = -76.157865 kcal Electronic energy + Delta-G solvation = -21041.698978 eV Core-core repulsion = 18084.837419 eV Total energy + Delta-G solvation = -2956.861559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53771 -39.56516 -37.18908 -35.63606 -33.65266 -32.87833 -30.35893 -30.05958 -28.02978 -26.27906 -24.34991 -23.22246 -22.38374 -21.76228 -20.84271 -19.57007 -18.52340 -17.37038 -16.82249 -16.52884 -16.20594 -16.19237 -15.72663 -15.30562 -15.05470 -14.70989 -14.55380 -14.23276 -13.89653 -13.63337 -13.46093 -13.29186 -13.02258 -13.00175 -12.75758 -12.42930 -12.38796 -12.08710 -12.03786 -11.80444 -11.61432 -11.61352 -11.43050 -11.33590 -11.22972 -11.13058 -10.55338 -10.21695 -9.19268 -8.20077 -6.31465 1.00590 1.39372 1.40587 1.51758 2.39560 2.82215 3.13189 3.43366 3.62250 3.64218 3.89799 3.96078 4.03201 4.09791 4.15995 4.34928 4.39450 4.43697 4.48116 4.56678 4.59929 4.62598 4.73035 4.86362 4.94600 4.95065 5.02618 5.03404 5.06717 5.12825 5.20055 5.23776 5.31458 5.34209 5.45203 5.52797 5.56172 5.66592 5.79226 6.10121 6.20580 6.33872 6.56360 6.85287 7.37569 8.91893 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.004760 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.233495 B = 5880.585721 C = 6335.313098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.045 3.955 10 C 0.077 3.923 11 N -0.525 5.525 12 C 0.043 3.957 13 C -0.132 4.132 14 C -0.117 4.117 15 C 0.081 3.919 16 H 0.034 0.966 17 C -0.122 4.122 18 H 0.095 0.905 19 C -0.095 4.095 20 C -0.125 4.125 21 C -0.106 4.106 22 C -0.163 4.163 23 C 0.370 3.630 24 O -0.490 6.490 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.004 1.004 28 H 0.056 0.944 29 H 0.014 0.986 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -18.350 6.685 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.007 3.993 10 C -0.051 4.051 11 N -0.249 5.249 12 C -0.085 4.085 13 C -0.170 4.170 14 C -0.155 4.155 15 C -0.027 4.027 16 H 0.052 0.948 17 C -0.142 4.142 18 H 0.113 0.887 19 C -0.133 4.133 20 C -0.163 4.163 21 C -0.143 4.143 22 C -0.201 4.201 23 C 0.247 3.753 24 O -0.366 6.366 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.014 0.986 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.139 -18.432 6.620 19.701 hybrid contribution 0.947 1.435 -0.871 1.927 sum 3.086 -16.997 5.749 18.206 Atomic orbital electron populations 1.70110 1.07728 1.27744 1.51338 1.25911 0.95721 1.03117 0.94576 0.85472 0.78684 0.78559 0.78464 1.19877 1.20469 1.18869 1.21615 0.93337 0.92470 1.51068 0.92627 1.18817 0.93934 0.91490 0.95050 1.22129 0.95262 0.89312 0.98380 1.63444 1.32686 1.01509 1.27289 1.22796 1.00135 0.96540 0.89016 1.22750 1.01402 0.95355 0.97538 1.22790 1.01329 0.96365 0.95006 1.22345 0.94338 0.91130 0.94928 0.94785 1.21783 0.98529 0.97943 0.95942 0.88666 1.21472 0.92788 1.01978 0.97033 1.21635 1.01536 0.97756 0.95326 1.21517 0.91552 0.97703 1.03562 1.22337 1.00287 1.03196 0.94244 1.25256 0.77521 0.82591 0.89902 1.90356 1.33986 1.59316 1.52919 0.92727 0.99186 0.98565 0.92535 0.96747 0.90882 0.94487 0.88740 0.91929 0.90689 0.89372 0.91199 0.91600 0.90107 0.91341 0.88597 0.91419 0.86897 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.04 2.43 5.07 29.85 0.15 2.58 16 10 C 0.08 3.42 4.51 86.30 0.39 3.81 16 11 N -0.53 -19.43 4.12 -860.64 -3.55 -22.98 16 12 C 0.04 1.47 6.29 86.65 0.54 2.02 16 13 C -0.13 -3.55 6.94 31.78 0.22 -3.33 16 14 C -0.12 -3.13 5.57 31.98 0.18 -2.96 16 15 C 0.08 2.54 1.77 45.39 0.08 2.62 16 16 H 0.03 1.21 7.74 -2.39 -0.02 1.19 16 17 C -0.12 -3.24 2.56 -11.28 -0.03 -3.27 16 18 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 19 C -0.10 -2.19 4.80 30.66 0.15 -2.04 16 20 C -0.13 -2.06 5.81 30.56 0.18 -1.88 16 21 C -0.11 -1.37 5.94 30.66 0.18 -1.19 16 22 C -0.16 -2.56 6.17 30.11 0.19 -2.37 16 23 C 0.37 8.84 6.23 29.46 0.18 9.03 16 24 O -0.49 -14.77 15.54 -1.45 -0.02 -14.79 16 25 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 26 H -0.01 -0.60 7.49 -2.39 -0.02 -0.62 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.06 2.46 8.00 -2.39 -0.02 2.44 16 29 H 0.01 0.65 7.81 -2.39 -0.02 0.63 16 30 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.04 1.41 7.13 -2.39 -0.02 1.40 16 32 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.04 7.14 -2.39 -0.02 2.02 16 35 H 0.09 2.12 5.68 -2.39 -0.01 2.11 16 36 H 0.07 1.51 5.83 -2.38 -0.01 1.49 16 37 H 0.07 1.88 7.80 -2.39 -0.02 1.86 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.62 330.26 2.81 -64.81 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.96 Total: 10.81 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.11 Total: -27.80 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -3.26 Total: -79.78 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.02 Total: -14.79 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.62 2.81 -64.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093470533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.351 kcal (2) G-P(sol) polarization free energy of solvation -67.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds