Wall clock time and date at job start Mon Mar 30 2020 08:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47086 * 270.00026 * 3 2 1 5 5 H 1.48498 * 109.46982 * 30.00233 * 3 2 1 6 6 H 1.48498 * 109.47004 * 149.99816 * 3 2 1 7 7 C 1.37882 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99655 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46834 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.46848 * 111.00166 * 64.83985 * 11 10 9 13 13 C 1.53034 * 109.52369 * 185.84032 * 12 11 10 14 14 C 1.53120 * 109.27933 * 300.82058 * 13 12 11 15 15 C 1.53115 * 109.16115 * 57.65561 * 14 13 12 16 16 C 1.46849 * 111.00062 * 189.05022 * 11 10 9 17 17 H 1.08996 * 109.46242 * 294.17528 * 16 11 10 18 18 C 1.53002 * 109.46119 * 54.14587 * 16 11 10 19 19 H 1.08997 * 109.96851 * 303.63422 * 18 16 11 20 20 C 1.54284 * 109.98077 * 182.36540 * 18 16 11 21 21 C 1.54988 * 103.74860 * 217.52683 * 20 18 16 22 22 C 1.54888 * 102.33262 * 37.08247 * 21 20 18 23 23 C 1.51441 * 109.98568 * 64.90842 * 18 16 11 24 24 O 1.20764 * 126.33766 * 298.93788 * 23 18 16 25 25 H 0.97003 * 120.00408 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47676 * 59.99950 * 9 7 2 27 27 H 1.08994 * 109.47338 * 299.99453 * 9 7 2 28 28 H 1.08999 * 109.47214 * 60.00038 * 10 9 7 29 29 H 1.08993 * 109.47389 * 299.99695 * 10 9 7 30 30 H 1.09003 * 109.46072 * 305.85331 * 12 11 10 31 31 H 1.08996 * 109.45923 * 65.83518 * 12 11 10 32 32 H 1.09007 * 109.50275 * 60.76377 * 13 12 11 33 33 H 1.09005 * 109.50279 * 180.83585 * 13 12 11 34 34 H 1.09003 * 109.52154 * 177.56163 * 14 13 12 35 35 H 1.08998 * 109.51968 * 297.68589 * 14 13 12 36 36 H 1.09004 * 109.50608 * 62.28524 * 15 14 13 37 37 H 1.09003 * 109.50391 * 182.36578 * 15 14 13 38 38 H 1.09003 * 110.57084 * 336.09149 * 20 18 16 39 39 H 1.08998 * 110.57091 * 98.81565 * 20 18 16 40 40 H 1.08992 * 110.83325 * 155.29582 * 21 20 18 41 41 H 1.09004 * 110.83245 * 278.67559 * 21 20 18 42 42 H 1.08997 * 110.43906 * 81.11617 * 22 21 20 43 43 H 1.09003 * 110.44402 * 203.51312 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.7423 -5.0990 -1.2394 13 6 -0.1206 -6.3592 -1.1430 14 6 0.7828 -7.5743 -0.9150 15 6 1.6072 -7.3561 0.3566 16 6 2.4201 -6.0669 0.2168 17 1 3.0978 -6.1553 -0.6322 18 6 3.2303 -5.8342 1.4937 19 1 3.7634 -4.8857 1.4285 20 6 4.2322 -6.9891 1.7002 21 6 4.2328 -7.2063 3.2348 22 6 2.7474 -6.9676 3.6032 23 6 2.3104 -5.8294 2.6967 24 8 1.3995 -5.0626 2.8980 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.1009 -4.2301 -1.3874 31 1 1.4280 -5.1920 -2.0815 32 1 -0.8161 -6.2612 -0.3094 33 1 -0.6796 -6.4892 -2.0698 34 1 0.1693 -8.4683 -0.8026 35 1 1.4513 -7.6961 -1.7673 36 1 0.9390 -7.2737 1.2139 37 1 2.2828 -8.1991 0.5015 38 1 3.8916 -7.8881 1.1863 39 1 5.2243 -6.7025 1.3513 40 1 4.5349 -8.2238 3.4821 41 1 4.8793 -6.4808 3.7287 42 1 2.1573 -7.8619 3.4034 43 1 2.6566 -6.6787 4.6503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093490556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:43 Heat of formation + Delta-G solvation = -73.586390 kcal Electronic energy + Delta-G solvation = -21444.593102 eV Core-core repulsion = 18487.843050 eV Total energy + Delta-G solvation = -2956.750052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49738 -39.35491 -37.03512 -35.88073 -34.36958 -32.69548 -30.95915 -28.93357 -27.49894 -26.78760 -24.83160 -23.40879 -21.93375 -21.63258 -20.96637 -19.41801 -18.58306 -17.22741 -16.90993 -16.64915 -16.49127 -15.87009 -15.58837 -15.29809 -14.81126 -14.70273 -14.48454 -14.28196 -14.10528 -13.87118 -13.51088 -13.47266 -13.11984 -12.87796 -12.50522 -12.46569 -12.36658 -12.10156 -11.96243 -11.89553 -11.75046 -11.53261 -11.39170 -11.33151 -11.04432 -10.86760 -10.55579 -10.15696 -9.05366 -8.22505 -6.34986 1.19375 1.35155 1.38531 1.49407 2.37113 2.96831 3.10012 3.36813 3.58006 3.74110 3.93390 3.96945 4.07485 4.16239 4.22855 4.35631 4.36252 4.45336 4.50837 4.59344 4.63426 4.67592 4.76101 4.86259 4.93008 4.97491 5.00442 5.06253 5.09002 5.12877 5.18679 5.23657 5.27934 5.30168 5.41451 5.46853 5.49453 5.66332 5.77600 6.11537 6.35117 6.41524 6.81529 6.83341 7.33910 8.90174 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.005864 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.968723 B = 4774.078674 C = 5602.366487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.042 3.958 10 C 0.085 3.915 11 N -0.543 5.543 12 C 0.055 3.945 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.110 4.110 16 C 0.096 3.904 17 H 0.051 0.949 18 C -0.159 4.159 19 H 0.081 0.919 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.178 4.178 23 C 0.362 3.638 24 O -0.474 6.474 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.020 1.020 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 -21.372 2.010 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.005 3.995 10 C -0.042 4.042 11 N -0.268 5.268 12 C -0.073 4.073 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.013 4.013 17 H 0.069 0.931 18 C -0.179 4.179 19 H 0.099 0.901 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.215 4.215 23 C 0.237 3.763 24 O -0.348 6.348 25 H 0.072 0.928 26 H 0.009 0.991 27 H -0.002 1.002 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.303 -20.852 2.501 22.583 hybrid contribution 0.305 1.729 -0.691 1.887 sum 8.608 -19.123 1.809 21.050 Atomic orbital electron populations 1.70139 1.08018 1.27783 1.51393 1.26043 0.95788 1.03568 0.94506 0.85378 0.78562 0.77978 0.78699 1.19288 1.20618 1.18663 1.21618 0.93399 0.92334 1.51032 0.92260 1.18845 0.94142 0.92286 0.94254 1.21898 0.95314 0.88839 0.98158 1.61896 1.27101 1.01783 1.36053 1.22074 0.96583 0.98793 0.89861 1.21579 0.97843 0.93835 1.01798 1.21553 0.98302 0.97319 0.97779 1.21778 0.98743 0.95915 0.98322 1.21607 0.92772 0.91549 0.95322 0.93138 1.22681 0.97816 1.02162 0.95221 0.90096 1.22441 0.98022 0.96680 0.97296 1.22419 0.93176 1.04073 0.94961 1.22985 0.99786 0.98653 1.00077 1.25450 0.80630 0.82668 0.87526 1.90490 1.27996 1.41247 1.75021 0.92758 0.99103 1.00165 0.92305 0.96609 0.93663 0.95049 0.93247 0.90223 0.89674 0.90965 0.93272 0.87544 0.88310 0.89617 0.87276 0.91055 0.86163 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.73 13.29 21.45 0.28 -60.44 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 46.60 29.54 68.60 2.03 48.63 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.55 -33.55 9.11 25.60 0.23 -33.31 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.04 2.50 4.88 29.85 0.15 2.64 16 10 C 0.09 4.02 4.61 86.30 0.40 4.41 16 11 N -0.54 -21.62 3.83 -871.11 -3.33 -24.96 16 12 C 0.05 2.04 5.29 86.32 0.46 2.50 16 13 C -0.11 -3.24 6.09 30.65 0.19 -3.05 16 14 C -0.11 -2.37 6.00 30.67 0.18 -2.19 16 15 C -0.11 -2.45 4.84 30.65 0.15 -2.30 16 16 C 0.10 2.75 1.64 44.94 0.07 2.82 16 17 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 18 C -0.16 -4.26 2.28 -10.87 -0.02 -4.29 16 19 H 0.08 2.57 5.96 -2.39 -0.01 2.56 16 20 C -0.11 -1.62 6.23 31.71 0.20 -1.42 16 21 C -0.11 -1.41 6.95 31.92 0.22 -1.18 16 22 C -0.18 -3.33 6.72 30.89 0.21 -3.12 16 23 C 0.36 11.20 5.62 29.73 0.17 11.37 16 24 O -0.47 -20.80 17.47 -1.46 -0.03 -20.83 16 25 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 26 H -0.01 -0.58 6.40 -2.39 -0.02 -0.60 16 27 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 28 H 0.06 2.78 5.63 -2.39 -0.01 2.77 16 29 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.04 2.02 6.17 -2.39 -0.01 2.01 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.30 7.08 -2.39 -0.02 1.28 16 37 H 0.11 1.53 6.24 -2.39 -0.01 1.52 16 38 H 0.10 1.09 5.91 -2.39 -0.01 1.08 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -79.10 326.43 2.98 -76.12 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.97 Total: 8.23 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 3.06 Total: -26.76 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.05 Total: -85.40 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.03 Total: -20.83 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -79.10 2.98 -76.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093490556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.534 kcal (2) G-P(sol) polarization free energy of solvation -79.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds