Wall clock time and date at job start Mon Mar 30 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47329 * 239.99826 * 3 2 1 5 5 H 1.48494 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47214 * 119.99878 * 3 2 1 7 7 C 1.37876 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00522 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47473 * 174.20248 * 9 7 2 11 11 C 1.46897 * 111.00020 * 284.03619 * 10 9 7 12 12 C 1.53002 * 117.49605 * 138.29827 * 11 10 9 13 13 C 1.52996 * 117.50184 * 69.67426 * 11 10 9 14 14 C 1.46897 * 110.99868 * 160.07645 * 10 9 7 15 15 H 1.08996 * 109.63821 * 63.70353 * 14 10 9 16 16 C 1.53158 * 109.55366 * 183.95444 * 14 10 9 17 17 C 1.53045 * 109.40162 * 178.47264 * 16 14 10 18 18 O 1.43045 * 109.44580 * 300.67225 * 17 16 14 19 19 C 1.42577 * 113.86276 * 58.73317 * 18 17 16 20 20 C 1.53405 * 113.61854 * 171.83732 * 19 18 17 21 21 C 1.53852 * 86.97514 * 220.08523 * 20 19 18 22 22 C 1.53423 * 113.57923 * 73.90569 * 19 18 17 23 23 C 1.52810 * 112.92603 * 302.91522 * 19 18 17 24 24 H 0.97007 * 120.00522 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 54.20160 * 9 7 2 26 26 H 1.08998 * 109.46924 * 294.20702 * 9 7 2 27 27 H 1.08995 * 115.54769 * 283.99717 * 11 10 9 28 28 H 1.09000 * 117.50037 * 359.97438 * 12 11 10 29 29 H 1.09004 * 117.49632 * 145.02266 * 12 11 10 30 30 H 1.09000 * 117.50145 * 214.98051 * 13 11 10 31 31 H 1.09005 * 117.49926 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.48228 * 298.45670 * 16 14 10 33 33 H 1.09005 * 109.47735 * 58.48498 * 16 14 10 34 34 H 1.09001 * 109.47291 * 60.66425 * 17 16 14 35 35 H 1.08999 * 109.47273 * 180.67211 * 17 16 14 36 36 H 1.08997 * 113.62777 * 334.60365 * 20 19 18 37 37 H 1.08998 * 113.63153 * 105.56733 * 20 19 18 38 38 H 1.09003 * 113.60551 * 270.60175 * 21 20 19 39 39 H 1.08998 * 113.60684 * 139.72356 * 21 20 19 40 40 H 1.08999 * 113.62909 * 254.47213 * 22 19 18 41 41 H 1.08995 * 113.63174 * 25.43374 * 22 19 18 42 42 H 1.09004 * 109.56275 * 294.08785 * 23 19 18 43 43 H 1.08997 * 109.56248 * 173.75469 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.1995 -3.6122 -0.1387 11 6 2.6758 -3.7278 -1.5235 12 6 4.1632 -4.0163 -1.7372 13 6 3.6011 -2.6273 -2.0465 14 6 1.6019 -4.8735 0.3195 15 1 0.7541 -5.1294 -0.3159 16 6 2.6479 -5.9903 0.2528 17 6 2.0330 -7.2941 0.7667 18 8 1.5930 -7.1138 2.1158 19 6 0.6307 -6.0738 2.2745 20 6 0.0162 -6.0140 3.6788 21 6 -1.3276 -5.7203 2.9897 22 6 -0.7644 -6.4438 1.7542 23 6 1.1285 -4.7201 1.7697 24 1 -0.4851 0.8401 -0.0004 25 1 0.5491 -2.5135 -0.8333 26 1 0.7041 -2.6029 0.9376 27 1 1.9710 -4.1696 -2.2278 28 1 4.7882 -4.1199 -0.8502 29 1 4.4370 -4.6480 -2.5822 30 1 3.5051 -2.3452 -3.0950 31 1 3.8560 -1.8172 -1.3632 32 1 2.9723 -6.1233 -0.7793 33 1 3.5046 -5.7234 0.8717 34 1 1.1833 -7.5667 0.1407 35 1 2.7800 -8.0871 0.7309 36 1 0.0376 -6.9678 4.2060 37 1 0.3873 -5.1863 4.2833 38 1 -1.5119 -4.6584 2.8272 39 1 -2.1739 -6.2326 3.4472 40 1 -1.0209 -5.9617 0.8109 41 1 -0.9587 -7.5163 1.7496 42 1 1.9581 -4.3816 2.3905 43 1 0.3174 -3.9934 1.8138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:58 Heat of formation + Delta-G solvation = 7.285232 kcal Electronic energy + Delta-G solvation = -21574.792311 eV Core-core repulsion = 18621.549116 eV Total energy + Delta-G solvation = -2953.243195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37091 -37.76988 -36.05433 -34.18432 -32.81098 -30.70517 -28.90829 -26.78275 -25.67110 -23.79970 -23.40295 -21.81789 -21.49738 -20.67805 -19.27558 -18.25980 -16.65736 -16.39090 -15.69059 -15.26719 -14.87351 -14.62226 -14.33284 -14.15404 -13.65182 -13.17989 -12.87274 -12.64094 -12.38782 -12.14450 -11.87860 -11.52264 -11.47498 -11.10391 -10.96669 -10.85560 -10.82728 -10.72992 -10.55306 -10.52090 -10.06157 -9.96524 -9.75230 -9.49550 -9.24721 -9.09239 -8.98165 -8.36112 -7.28631 -6.00291 -3.99672 3.33424 3.37787 3.40355 3.95952 4.38876 4.56993 4.58492 4.71706 4.81345 4.94392 5.03755 5.21618 5.34457 5.38403 5.42281 5.59382 5.65862 5.69019 5.74628 5.79114 5.82197 5.85769 5.95910 6.01319 6.10245 6.11047 6.17941 6.23935 6.25856 6.36277 6.48298 6.49709 6.60651 6.69738 6.77580 7.02694 7.25626 7.39162 7.51513 7.86749 8.13586 8.22267 8.56803 9.06019 9.62654 11.10220 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.006618 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.080037 B = 4229.775120 C = 5321.364719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.497 4.497 8 H 0.066 0.934 9 C 0.191 3.809 10 N -0.505 5.505 11 C 0.027 3.973 12 C -0.185 4.185 13 C -0.155 4.155 14 C 0.093 3.907 15 H 0.028 0.972 16 C -0.144 4.144 17 C 0.064 3.936 18 O -0.372 6.372 19 C 0.096 3.904 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.164 4.164 23 C -0.116 4.116 24 H 0.260 0.740 25 H -0.005 1.005 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -12.863 1.573 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.066 3.934 10 N -0.229 5.229 11 C -0.082 4.082 12 C -0.223 4.223 13 C -0.192 4.192 14 C -0.016 4.016 15 H 0.045 0.955 16 C -0.182 4.182 17 C -0.013 4.013 18 O -0.291 6.291 19 C 0.056 3.944 20 C -0.159 4.159 21 C -0.176 4.176 22 C -0.202 4.202 23 C -0.154 4.154 24 H 0.070 0.930 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.584 -12.729 2.026 12.987 hybrid contribution -0.447 0.960 -0.915 1.400 sum 1.137 -11.770 1.111 11.876 Atomic orbital electron populations 1.69941 1.05990 1.26705 1.51440 1.24964 0.94822 0.99107 0.95770 0.86639 0.79506 0.83120 0.78631 1.20271 1.21459 1.20260 1.21181 0.93436 0.89696 1.49232 0.91602 1.19802 0.89990 0.87316 0.96258 1.61977 1.40463 1.02998 1.17505 1.21986 0.91268 1.04013 0.90935 1.23033 0.96974 1.00218 1.02061 1.23108 1.02415 0.92882 1.00825 1.21443 0.94382 0.90908 0.94886 0.95452 1.22216 0.99569 0.94451 1.01967 1.22518 0.97981 0.97252 0.83543 1.87874 1.60343 1.53747 1.27104 1.22756 0.86587 0.88246 0.96803 1.22990 0.95281 1.02396 0.95225 1.22722 0.96663 1.01318 0.96929 1.23520 0.97102 1.00765 0.98795 1.21969 1.02399 0.94671 0.96332 0.93009 0.98730 0.94978 0.91637 0.88994 0.90350 0.90274 0.86504 0.91040 0.90591 0.93787 0.89440 0.89580 0.90613 0.89456 0.91178 0.91202 0.89906 0.90119 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -13.50 7.84 -34.44 -0.27 -13.77 16 8 H 0.07 1.77 5.75 -52.48 -0.30 1.47 16 9 C 0.19 4.82 4.61 -4.98 -0.02 4.79 16 10 N -0.50 -10.62 4.44 -219.86 -0.98 -11.60 16 11 C 0.03 0.53 3.99 -67.72 -0.27 0.26 16 12 C -0.19 -3.04 9.28 -26.73 -0.25 -3.29 16 13 C -0.16 -2.97 9.47 -26.73 -0.25 -3.22 16 14 C 0.09 1.67 1.94 -67.47 -0.13 1.54 16 15 H 0.03 0.51 7.62 -51.93 -0.40 0.12 16 16 C -0.14 -2.20 4.93 -26.63 -0.13 -2.33 16 17 C 0.06 0.87 6.74 37.18 0.25 1.12 16 18 O -0.37 -5.72 10.53 -35.23 -0.37 -6.09 16 19 C 0.10 1.44 1.16 -90.29 -0.10 1.33 16 20 C -0.12 -1.60 7.50 -26.08 -0.20 -1.79 16 21 C -0.14 -1.75 7.73 -25.85 -0.20 -1.95 16 22 C -0.16 -2.22 6.91 -26.07 -0.18 -2.40 16 23 C -0.12 -2.03 4.02 -26.67 -0.11 -2.14 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H -0.01 -0.15 8.00 -51.93 -0.42 -0.56 16 26 H 0.03 0.85 5.48 -51.93 -0.28 0.56 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.12 2.52 5.45 -51.93 -0.28 2.24 16 32 H 0.07 1.04 6.61 -51.93 -0.34 0.69 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.57 7.84 -51.93 -0.41 0.16 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.09 1.18 7.61 -51.93 -0.40 0.78 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.08 1.61 5.45 -51.93 -0.28 1.33 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -28.71 325.86 -9.97 -38.68 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.28 Total: 3.72 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.96 Total: -20.44 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.24 Total: -37.20 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.37 Total: -6.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.71 -9.97 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.962 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds