Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47329 * 239.99826 * 3 2 1 5 5 H 1.48494 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47214 * 119.99878 * 3 2 1 7 7 C 1.37876 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00522 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47473 * 174.20248 * 9 7 2 11 11 C 1.46897 * 111.00020 * 284.03619 * 10 9 7 12 12 C 1.53002 * 117.49605 * 138.29827 * 11 10 9 13 13 C 1.52996 * 117.50184 * 69.67426 * 11 10 9 14 14 C 1.46897 * 110.99868 * 160.07645 * 10 9 7 15 15 H 1.08996 * 109.63821 * 63.70353 * 14 10 9 16 16 C 1.53158 * 109.55366 * 183.95444 * 14 10 9 17 17 C 1.53045 * 109.40162 * 178.47264 * 16 14 10 18 18 O 1.43045 * 109.44580 * 300.67225 * 17 16 14 19 19 C 1.42577 * 113.86276 * 58.73317 * 18 17 16 20 20 C 1.53405 * 113.61854 * 171.83732 * 19 18 17 21 21 C 1.53852 * 86.97514 * 220.08523 * 20 19 18 22 22 C 1.53423 * 113.57923 * 73.90569 * 19 18 17 23 23 C 1.52810 * 112.92603 * 302.91522 * 19 18 17 24 24 H 0.97007 * 120.00522 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 54.20160 * 9 7 2 26 26 H 1.08998 * 109.46924 * 294.20702 * 9 7 2 27 27 H 1.08995 * 115.54769 * 283.99717 * 11 10 9 28 28 H 1.09000 * 117.50037 * 359.97438 * 12 11 10 29 29 H 1.09004 * 117.49632 * 145.02266 * 12 11 10 30 30 H 1.09000 * 117.50145 * 214.98051 * 13 11 10 31 31 H 1.09005 * 117.49926 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.48228 * 298.45670 * 16 14 10 33 33 H 1.09005 * 109.47735 * 58.48498 * 16 14 10 34 34 H 1.09001 * 109.47291 * 60.66425 * 17 16 14 35 35 H 1.08999 * 109.47273 * 180.67211 * 17 16 14 36 36 H 1.08997 * 113.62777 * 334.60365 * 20 19 18 37 37 H 1.08998 * 113.63153 * 105.56733 * 20 19 18 38 38 H 1.09003 * 113.60551 * 270.60175 * 21 20 19 39 39 H 1.08998 * 113.60684 * 139.72356 * 21 20 19 40 40 H 1.08999 * 113.62909 * 254.47213 * 22 19 18 41 41 H 1.08995 * 113.63174 * 25.43374 * 22 19 18 42 42 H 1.09004 * 109.56275 * 294.08785 * 23 19 18 43 43 H 1.08997 * 109.56248 * 173.75469 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.1995 -3.6122 -0.1387 11 6 2.6758 -3.7278 -1.5235 12 6 4.1632 -4.0163 -1.7372 13 6 3.6011 -2.6273 -2.0465 14 6 1.6019 -4.8735 0.3195 15 1 0.7541 -5.1294 -0.3159 16 6 2.6479 -5.9903 0.2528 17 6 2.0330 -7.2941 0.7667 18 8 1.5930 -7.1138 2.1158 19 6 0.6307 -6.0738 2.2745 20 6 0.0162 -6.0140 3.6788 21 6 -1.3276 -5.7203 2.9897 22 6 -0.7644 -6.4438 1.7542 23 6 1.1285 -4.7201 1.7697 24 1 -0.4851 0.8401 -0.0004 25 1 0.5491 -2.5135 -0.8333 26 1 0.7041 -2.6029 0.9376 27 1 1.9710 -4.1696 -2.2278 28 1 4.7882 -4.1199 -0.8502 29 1 4.4370 -4.6480 -2.5822 30 1 3.5051 -2.3452 -3.0950 31 1 3.8560 -1.8172 -1.3632 32 1 2.9723 -6.1233 -0.7793 33 1 3.5046 -5.7234 0.8717 34 1 1.1833 -7.5667 0.1407 35 1 2.7800 -8.0871 0.7309 36 1 0.0376 -6.9678 4.2060 37 1 0.3873 -5.1863 4.2833 38 1 -1.5119 -4.6584 2.8272 39 1 -2.1739 -6.2326 3.4472 40 1 -1.0209 -5.9617 0.8109 41 1 -0.9587 -7.5163 1.7496 42 1 1.9581 -4.3816 2.3905 43 1 0.3174 -3.9934 1.8138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = -9.597099 kcal Electronic energy + Delta-G solvation = -21575.524384 eV Core-core repulsion = 18621.549116 eV Total energy + Delta-G solvation = -2953.975268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60628 -39.28463 -37.21293 -35.70259 -34.82077 -32.30063 -30.23048 -28.71175 -26.76152 -25.30496 -24.68341 -23.51761 -22.97002 -22.02033 -20.85138 -19.46096 -18.61777 -17.55882 -17.13510 -16.69910 -16.52782 -16.21926 -15.61307 -15.53719 -15.24024 -14.67496 -14.23492 -14.19575 -13.83651 -13.62169 -13.38717 -13.15769 -12.81811 -12.75762 -12.57983 -12.40410 -12.25594 -12.05688 -11.98419 -11.82698 -11.62170 -11.37949 -11.21879 -11.18342 -10.81133 -10.68772 -10.46583 -10.30897 -9.03884 -8.15525 -6.22391 1.40121 1.42321 1.49703 2.40663 2.82893 3.01829 3.12109 3.17505 3.58190 3.59670 3.81216 3.83245 3.95401 4.13727 4.17497 4.18471 4.27314 4.32038 4.45360 4.52394 4.62354 4.72963 4.78149 4.81224 4.83797 4.89445 4.90814 4.96619 5.01980 5.03271 5.12821 5.20084 5.23026 5.27394 5.34823 5.41343 5.43103 5.51131 5.76933 6.12519 6.33685 6.44303 6.66914 6.91862 7.44698 8.94757 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.006618 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.080037 B = 4229.775120 C = 5321.364719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.509 5.509 11 C 0.002 3.998 12 C -0.141 4.141 13 C -0.172 4.172 14 C 0.090 3.910 15 H 0.018 0.982 16 C -0.133 4.133 17 C 0.064 3.936 18 O -0.378 6.378 19 C 0.091 3.909 20 C -0.117 4.117 21 C -0.135 4.135 22 C -0.158 4.158 23 C -0.110 4.110 24 H 0.261 0.739 25 H -0.043 1.043 26 H 0.013 0.987 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 -14.551 1.420 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.234 5.234 11 C -0.107 4.107 12 C -0.179 4.179 13 C -0.210 4.210 14 C -0.018 4.018 15 H 0.036 0.964 16 C -0.171 4.171 17 C -0.013 4.013 18 O -0.297 6.297 19 C 0.051 3.949 20 C -0.154 4.154 21 C -0.172 4.172 22 C -0.196 4.196 23 C -0.148 4.148 24 H 0.070 0.930 25 H -0.025 1.025 26 H 0.031 0.969 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.945 -14.436 1.870 14.852 hybrid contribution -0.859 1.455 -0.894 1.912 sum 2.086 -12.981 0.976 13.184 Atomic orbital electron populations 1.70079 1.07590 1.27540 1.52595 1.25815 0.95615 1.02752 0.95435 0.85590 0.78272 0.78675 0.79047 1.19214 1.21177 1.19579 1.21481 0.93581 0.90661 1.48558 0.91527 1.19424 0.89800 0.88888 0.93647 1.61941 1.39131 1.03239 1.19054 1.22120 0.93145 1.05483 0.89951 1.23059 0.93819 0.98045 1.02944 1.23060 1.03625 0.93355 1.00924 1.21560 0.95095 0.90565 0.94604 0.96438 1.22136 0.98162 0.94097 1.02708 1.22686 0.99009 0.96776 0.82834 1.87872 1.60418 1.53260 1.28193 1.22734 0.87174 0.86722 0.98305 1.23020 0.94916 1.03190 0.94282 1.22684 0.97503 1.00469 0.96588 1.23508 0.95921 1.01820 0.98322 1.21834 1.00773 0.96085 0.96077 0.93018 1.02536 0.96947 0.91603 0.88927 0.86675 0.88942 0.89314 0.89782 0.91469 0.92894 0.86444 0.87664 0.91122 0.91298 0.88622 0.92775 0.87926 0.91964 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 13.29 21.45 0.28 -56.38 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.50 -28.33 7.84 25.60 0.20 -28.13 16 8 H 0.07 3.68 5.75 -2.91 -0.02 3.66 16 9 C 0.21 11.10 4.61 85.56 0.39 11.49 16 10 N -0.51 -22.04 4.44 -849.52 -3.77 -25.81 16 11 C 0.00 0.08 3.99 44.92 0.18 0.26 16 12 C -0.14 -4.29 9.28 30.60 0.28 -4.01 16 13 C -0.17 -6.49 9.47 30.59 0.29 -6.20 16 14 C 0.09 3.31 1.94 45.07 0.09 3.40 16 15 H 0.02 0.68 7.62 -2.39 -0.02 0.66 16 16 C -0.13 -3.86 4.93 30.66 0.15 -3.71 16 17 C 0.06 1.56 6.74 72.00 0.49 2.04 16 18 O -0.38 -10.87 10.53 -148.98 -1.57 -12.44 16 19 C 0.09 2.67 1.16 -10.58 -0.01 2.65 16 20 C -0.12 -2.95 7.50 31.02 0.23 -2.72 16 21 C -0.14 -3.32 7.73 31.17 0.24 -3.08 16 22 C -0.16 -4.14 6.91 31.02 0.21 -3.92 16 23 C -0.11 -4.00 4.02 30.64 0.12 -3.88 16 24 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 25 H -0.04 -2.58 8.00 -2.38 -0.02 -2.60 16 26 H 0.01 0.71 5.48 -2.39 -0.01 0.70 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 28 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.09 3.87 5.45 -2.38 -0.01 3.85 16 32 H 0.08 2.22 6.61 -2.39 -0.02 2.20 16 33 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.05 1.22 7.84 -2.39 -0.02 1.20 16 35 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 38 H 0.07 1.94 7.61 -2.39 -0.02 1.92 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.57 7.56 -2.39 -0.02 1.56 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.06 2.42 5.45 -2.39 -0.01 2.41 16 Total: -1.00 -63.82 325.86 1.28 -62.54 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.97 Total: 20.73 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.33 Total: -35.28 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -3.49 Total: -82.20 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.57 Total: -12.44 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.82 1.28 -62.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.946 kcal (2) G-P(sol) polarization free energy of solvation -63.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds