Wall clock time and date at job start Mon Mar 30 2020 08:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.01332 * 2 1 4 4 O 1.21297 * 119.99737 * 235.06590 * 3 2 1 5 5 N 1.34777 * 120.00270 * 55.06612 * 3 2 1 6 6 C 1.37092 * 120.00157 * 192.78767 * 5 3 2 7 7 H 1.07995 * 120.00268 * 50.37835 * 6 5 3 8 8 C 1.38956 * 120.00086 * 230.38012 * 6 5 3 9 9 N 1.31415 * 119.99817 * 318.48709 * 8 6 5 10 10 Si 1.86796 * 120.00124 * 138.48639 * 8 6 5 11 11 H 1.48500 * 109.47230 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47161 * 120.00164 * 10 8 6 13 13 H 1.48505 * 109.47011 * 240.00152 * 10 8 6 14 14 C 1.46501 * 119.99469 * 12.78654 * 5 3 2 15 15 C 1.54893 * 110.75696 * 94.66221 * 14 5 3 16 16 C 1.54262 * 104.19591 * 156.25290 * 15 14 5 17 17 C 1.53872 * 106.60034 * 336.38544 * 16 15 14 18 18 C 1.54270 * 106.59763 * 0.02562 * 17 16 15 19 19 C 1.54268 * 110.03731 * 121.38803 * 2 1 3 20 20 C 1.54960 * 104.15693 * 95.75633 * 19 2 1 21 21 C 1.54883 * 102.78081 * 37.89148 * 20 19 2 22 22 C 1.53869 * 110.03567 * 238.61189 * 2 1 3 23 23 H 1.08994 * 109.47212 * 80.72720 * 1 2 3 24 24 H 1.09006 * 109.46799 * 200.72645 * 1 2 3 25 25 H 1.08997 * 109.47283 * 320.72156 * 1 2 3 26 26 H 0.96994 * 119.99809 * 179.97438 * 9 8 6 27 27 H 1.08992 * 110.82198 * 331.32166 * 14 5 3 28 28 H 1.08998 * 110.48743 * 37.57095 * 15 14 5 29 29 H 1.09004 * 110.48228 * 274.92795 * 15 14 5 30 30 H 1.08998 * 110.03129 * 217.10094 * 16 15 14 31 31 H 1.09004 * 110.03463 * 95.67421 * 16 15 14 32 32 H 1.09003 * 110.02894 * 119.28167 * 17 16 15 33 33 H 1.08994 * 110.03324 * 240.71602 * 17 16 15 34 34 H 1.09001 * 110.48626 * 142.29014 * 18 17 16 35 35 H 1.09004 * 110.48109 * 264.79652 * 18 17 16 36 36 H 1.09001 * 110.49059 * 214.40697 * 19 2 1 37 37 H 1.09006 * 110.48160 * 337.04598 * 19 2 1 38 38 H 1.09001 * 110.72075 * 279.57404 * 20 19 2 39 39 H 1.09003 * 110.92053 * 156.30553 * 20 19 2 40 40 H 1.09003 * 110.48991 * 203.40338 * 21 20 19 41 41 H 1.09000 * 110.48400 * 80.75850 * 21 20 19 42 42 H 1.09006 * 110.02953 * 359.94309 * 22 2 1 43 43 H 1.08995 * 110.04149 * 121.33053 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4160 0.0000 4 8 2.8185 1.7800 -0.8612 5 7 1.6484 2.2780 0.9569 6 6 1.8985 3.6188 0.8184 7 1 1.6316 4.1263 -0.0967 8 6 2.4955 4.3249 1.8557 9 7 2.1291 4.1028 3.0980 10 14 3.8189 5.5898 1.4841 11 1 4.0473 5.6513 0.0181 12 1 3.3814 6.9221 1.9727 13 1 5.0798 5.2020 2.1661 14 6 0.9492 1.7821 2.1449 15 6 1.9446 1.5398 3.3066 16 6 1.0737 1.6324 4.5765 17 6 -0.1572 2.4776 4.2048 18 6 0.0083 2.8686 2.7217 19 6 2.0586 -0.7548 1.2372 20 6 2.3300 -2.1896 0.7185 21 6 2.8886 -1.9395 -0.7043 22 6 2.0571 -0.7529 -1.2340 23 1 -0.3633 0.1656 -1.0142 24 1 -0.3633 -0.9612 0.3637 25 1 -0.3634 0.7955 0.6506 26 1 2.5461 4.5954 3.8220 27 1 0.3938 0.8726 1.9161 28 1 2.7154 2.3105 3.3155 29 1 2.3942 0.5503 3.2236 30 1 1.6317 2.1176 5.3773 31 1 0.7619 0.6358 4.8889 32 1 -1.0664 1.8911 4.3367 33 1 -0.1965 3.3729 4.8252 34 1 -0.9551 2.8491 2.2122 35 1 0.4644 3.8549 2.6359 36 1 2.9807 -0.2987 1.5973 37 1 1.3059 -0.7693 2.0256 38 1 1.4054 -2.7653 0.6748 39 1 3.0689 -2.6950 1.3403 40 1 2.7417 -2.8186 -1.3319 41 1 3.9449 -1.6748 -0.6583 42 1 1.2229 -1.1192 -1.8324 43 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:02 Heat of formation + Delta-G solvation = -15.348498 kcal Electronic energy + Delta-G solvation = -22613.256206 eV Core-core repulsion = 19659.031539 eV Total energy + Delta-G solvation = -2954.224667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89744 -37.36380 -36.11825 -33.42489 -32.21604 -30.53117 -28.47137 -27.40562 -26.60158 -25.30193 -24.57431 -20.90414 -20.44276 -19.72149 -19.20384 -18.02422 -16.53339 -16.11875 -15.16965 -14.84490 -14.43562 -14.03956 -13.99655 -13.45432 -13.38824 -12.90591 -12.66171 -12.54631 -11.99643 -11.92892 -11.62902 -11.18739 -11.00617 -10.73127 -10.69675 -10.61633 -10.56404 -10.35080 -10.26771 -10.22009 -10.09216 -10.01872 -9.97454 -9.79267 -9.56264 -9.01166 -8.17042 -7.96046 -7.18742 -6.34731 -3.91731 3.20161 3.36302 3.47975 3.97673 4.19500 4.74657 4.89023 4.96330 5.12114 5.29758 5.66130 5.71900 5.74391 5.79383 5.81365 5.88140 5.89137 5.99810 6.11148 6.15428 6.24051 6.29309 6.31093 6.38803 6.50014 6.57123 6.60210 6.67028 6.67580 6.73348 6.76259 6.82269 6.90821 7.01112 7.03367 7.15296 7.39023 7.51737 7.82812 8.24510 8.42676 8.72874 9.27225 9.46052 10.12594 10.47997 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.009322 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.799915 B = 3002.809020 C = 3833.609285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C 0.480 3.520 4 O -0.574 6.574 5 N -0.446 5.446 6 C -0.328 4.328 7 H 0.084 0.916 8 C 0.061 3.939 9 N -0.804 5.804 10 Si 0.878 3.122 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.281 1.281 14 C 0.126 3.874 15 C -0.133 4.133 16 C -0.101 4.101 17 C -0.100 4.100 18 C -0.126 4.126 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.113 4.113 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.264 0.736 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.017 0.983 35 H 0.152 0.848 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -8.574 1.646 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C 0.268 3.732 4 O -0.457 6.457 5 N -0.166 5.166 6 C -0.454 4.454 7 H 0.101 0.899 8 C -0.146 4.146 9 N -0.439 5.439 10 Si 0.704 3.296 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.207 1.207 14 C 0.023 3.977 15 C -0.171 4.171 16 C -0.139 4.139 17 C -0.139 4.139 18 C -0.163 4.163 19 C -0.146 4.146 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.151 4.151 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.020 -8.297 1.429 8.944 hybrid contribution 0.555 0.537 0.155 0.787 sum -2.466 -7.760 1.584 8.295 Atomic orbital electron populations 1.22199 0.93882 1.02182 1.02233 1.21258 0.96025 0.94783 0.96276 1.20118 0.82842 0.85881 0.84383 1.90476 1.36564 1.78284 1.40402 1.43490 1.49871 1.05732 1.17471 1.18864 1.40217 0.83872 1.02457 0.89856 1.25423 0.96408 0.98212 0.94517 1.70435 1.33567 1.39664 1.00252 0.86709 0.83117 0.79829 0.79974 1.19081 1.21430 1.20705 1.22380 0.92996 0.95989 0.86340 1.23204 1.00346 0.99970 0.93605 1.21793 0.96853 0.97055 0.98166 1.21801 0.95495 0.98049 0.98516 1.23152 0.95568 1.05884 0.91668 1.22694 1.01417 0.94254 0.96253 1.22532 1.00222 0.96987 0.96462 1.22327 0.99840 0.97691 0.96048 1.22217 0.99544 0.96471 0.96834 0.92842 0.92671 0.90524 0.92461 0.91443 0.87388 0.95211 0.93352 0.94733 0.95059 0.93169 0.96466 0.83083 0.91094 0.90990 0.91895 0.92075 0.92342 0.91859 0.92379 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 7.83 37.16 0.29 -2.17 16 2 C -0.08 -1.49 0.61 -154.54 -0.09 -1.59 16 3 C 0.48 11.58 6.25 -10.98 -0.07 11.51 16 4 O -0.57 -15.95 15.23 5.54 0.08 -15.87 16 5 N -0.45 -10.90 2.55 -105.63 -0.27 -11.17 16 6 C -0.33 -8.73 7.51 -14.93 -0.11 -8.85 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.06 1.53 4.67 -17.46 -0.08 1.45 16 9 N -0.80 -19.03 5.95 55.50 0.33 -18.70 16 10 Si 0.88 20.38 29.69 -169.99 -5.05 15.33 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.13 2.68 1.45 -65.95 -0.10 2.59 16 15 C -0.13 -2.76 5.37 -25.07 -0.13 -2.90 16 16 C -0.10 -1.84 6.60 -25.62 -0.17 -2.01 16 17 C -0.10 -1.87 6.54 -25.61 -0.17 -2.04 16 18 C -0.13 -2.68 5.39 -25.08 -0.14 -2.81 16 19 C -0.11 -1.83 3.52 -25.03 -0.09 -1.92 16 20 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 21 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 22 C -0.11 -1.94 6.01 -25.61 -0.15 -2.10 16 23 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 24 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 25 H 0.08 1.38 5.02 -51.93 -0.26 1.12 16 26 H 0.26 5.99 8.31 -40.82 -0.34 5.65 16 27 H 0.07 1.32 3.10 -51.93 -0.16 1.16 16 28 H 0.11 2.58 5.16 -51.93 -0.27 2.31 16 29 H 0.03 0.58 5.46 -51.93 -0.28 0.29 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.15 3.66 3.89 -59.70 -0.23 3.43 16 36 H 0.07 1.35 6.73 -51.93 -0.35 1.00 16 37 H 0.07 1.16 6.00 -51.93 -0.31 0.85 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.89 7.51 -51.93 -0.39 0.50 16 43 H 0.09 1.76 6.40 -51.93 -0.33 1.43 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -27.35 304.93 -8.43 -35.78 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.77 Total: 4.71 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.35 Total: -14.67 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.06 Total: -29.87 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.05 Total: 15.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.35 -8.43 -35.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.431 kcal (2) G-P(sol) polarization free energy of solvation -27.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds