Wall clock time and date at job start Mon Mar 30 2020 08:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.01332 * 2 1 4 4 O 1.21297 * 119.99737 * 235.06590 * 3 2 1 5 5 N 1.34777 * 120.00270 * 55.06612 * 3 2 1 6 6 C 1.37092 * 120.00157 * 192.78767 * 5 3 2 7 7 H 1.07995 * 120.00268 * 50.37835 * 6 5 3 8 8 C 1.38956 * 120.00086 * 230.38012 * 6 5 3 9 9 N 1.31415 * 119.99817 * 318.48709 * 8 6 5 10 10 Si 1.86796 * 120.00124 * 138.48639 * 8 6 5 11 11 H 1.48500 * 109.47230 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47161 * 120.00164 * 10 8 6 13 13 H 1.48505 * 109.47011 * 240.00152 * 10 8 6 14 14 C 1.46501 * 119.99469 * 12.78654 * 5 3 2 15 15 C 1.54893 * 110.75696 * 94.66221 * 14 5 3 16 16 C 1.54262 * 104.19591 * 156.25290 * 15 14 5 17 17 C 1.53872 * 106.60034 * 336.38544 * 16 15 14 18 18 C 1.54270 * 106.59763 * 0.02562 * 17 16 15 19 19 C 1.54268 * 110.03731 * 121.38803 * 2 1 3 20 20 C 1.54960 * 104.15693 * 95.75633 * 19 2 1 21 21 C 1.54883 * 102.78081 * 37.89148 * 20 19 2 22 22 C 1.53869 * 110.03567 * 238.61189 * 2 1 3 23 23 H 1.08994 * 109.47212 * 80.72720 * 1 2 3 24 24 H 1.09006 * 109.46799 * 200.72645 * 1 2 3 25 25 H 1.08997 * 109.47283 * 320.72156 * 1 2 3 26 26 H 0.96994 * 119.99809 * 179.97438 * 9 8 6 27 27 H 1.08992 * 110.82198 * 331.32166 * 14 5 3 28 28 H 1.08998 * 110.48743 * 37.57095 * 15 14 5 29 29 H 1.09004 * 110.48228 * 274.92795 * 15 14 5 30 30 H 1.08998 * 110.03129 * 217.10094 * 16 15 14 31 31 H 1.09004 * 110.03463 * 95.67421 * 16 15 14 32 32 H 1.09003 * 110.02894 * 119.28167 * 17 16 15 33 33 H 1.08994 * 110.03324 * 240.71602 * 17 16 15 34 34 H 1.09001 * 110.48626 * 142.29014 * 18 17 16 35 35 H 1.09004 * 110.48109 * 264.79652 * 18 17 16 36 36 H 1.09001 * 110.49059 * 214.40697 * 19 2 1 37 37 H 1.09006 * 110.48160 * 337.04598 * 19 2 1 38 38 H 1.09001 * 110.72075 * 279.57404 * 20 19 2 39 39 H 1.09003 * 110.92053 * 156.30553 * 20 19 2 40 40 H 1.09003 * 110.48991 * 203.40338 * 21 20 19 41 41 H 1.09000 * 110.48400 * 80.75850 * 21 20 19 42 42 H 1.09006 * 110.02953 * 359.94309 * 22 2 1 43 43 H 1.08995 * 110.04149 * 121.33053 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4160 0.0000 4 8 2.8185 1.7800 -0.8612 5 7 1.6484 2.2780 0.9569 6 6 1.8985 3.6188 0.8184 7 1 1.6316 4.1263 -0.0967 8 6 2.4955 4.3249 1.8557 9 7 2.1291 4.1028 3.0980 10 14 3.8189 5.5898 1.4841 11 1 4.0473 5.6513 0.0181 12 1 3.3814 6.9221 1.9727 13 1 5.0798 5.2020 2.1661 14 6 0.9492 1.7821 2.1449 15 6 1.9446 1.5398 3.3066 16 6 1.0737 1.6324 4.5765 17 6 -0.1572 2.4776 4.2048 18 6 0.0083 2.8686 2.7217 19 6 2.0586 -0.7548 1.2372 20 6 2.3300 -2.1896 0.7185 21 6 2.8886 -1.9395 -0.7043 22 6 2.0571 -0.7529 -1.2340 23 1 -0.3633 0.1656 -1.0142 24 1 -0.3633 -0.9612 0.3637 25 1 -0.3634 0.7955 0.6506 26 1 2.5461 4.5954 3.8220 27 1 0.3938 0.8726 1.9161 28 1 2.7154 2.3105 3.3155 29 1 2.3942 0.5503 3.2236 30 1 1.6317 2.1176 5.3773 31 1 0.7619 0.6358 4.8889 32 1 -1.0664 1.8911 4.3367 33 1 -0.1965 3.3729 4.8252 34 1 -0.9551 2.8491 2.2122 35 1 0.4644 3.8549 2.6359 36 1 2.9807 -0.2987 1.5973 37 1 1.3059 -0.7693 2.0256 38 1 1.4054 -2.7653 0.6748 39 1 3.0689 -2.6950 1.3403 40 1 2.7417 -2.8186 -1.3319 41 1 3.9449 -1.6748 -0.6583 42 1 1.2229 -1.1192 -1.8324 43 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:01 Heat of formation + Delta-G solvation = -29.125219 kcal Electronic energy + Delta-G solvation = -22613.853610 eV Core-core repulsion = 19659.031539 eV Total energy + Delta-G solvation = -2954.822071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53741 -38.93641 -37.82575 -35.23210 -34.04186 -31.95916 -29.85483 -28.95494 -28.23962 -26.97280 -26.12563 -22.56051 -21.78608 -21.32134 -20.71669 -19.64445 -18.44832 -17.69264 -16.91254 -16.35310 -16.09837 -15.77326 -15.56356 -15.12287 -14.87016 -14.39521 -14.29419 -14.16095 -13.68945 -13.38082 -13.16460 -12.91352 -12.59771 -12.49858 -12.29747 -12.09626 -11.95800 -11.92896 -11.78677 -11.66402 -11.58897 -11.54625 -11.40159 -11.24841 -11.13057 -10.73974 -10.01710 -9.83706 -9.07495 -8.28805 -5.91867 1.28204 1.40437 1.53258 2.14802 2.28198 2.80780 3.18595 3.64922 3.79566 3.92870 4.20783 4.26942 4.34027 4.43404 4.43847 4.49155 4.58374 4.66042 4.77896 4.82223 4.96006 5.00357 5.04773 5.07010 5.07519 5.14671 5.15379 5.17604 5.25624 5.28455 5.38587 5.43332 5.48563 5.49538 5.52500 5.56363 5.59657 5.85113 6.10555 6.27004 6.52930 6.83003 7.31571 7.61452 8.22431 8.50353 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.009322 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.799915 B = 3002.809020 C = 3833.609285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C 0.460 3.540 4 O -0.629 6.629 5 N -0.451 5.451 6 C -0.368 4.368 7 H 0.047 0.953 8 C 0.046 3.954 9 N -0.783 5.783 10 Si 0.920 3.080 11 H -0.294 1.294 12 H -0.270 1.270 13 H -0.279 1.279 14 C 0.127 3.873 15 C -0.133 4.133 16 C -0.094 4.094 17 C -0.094 4.094 18 C -0.130 4.130 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.115 4.115 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.270 0.730 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.122 0.878 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 -11.266 3.592 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C 0.250 3.750 4 O -0.516 6.516 5 N -0.170 5.170 6 C -0.494 4.494 7 H 0.065 0.935 8 C -0.163 4.163 9 N -0.417 5.417 10 Si 0.746 3.254 11 H -0.220 1.220 12 H -0.195 1.195 13 H -0.205 1.205 14 C 0.025 3.975 15 C -0.171 4.171 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.168 4.168 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.139 0.861 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.361 -10.984 3.434 12.307 hybrid contribution 0.982 1.453 -0.469 1.816 sum -3.379 -9.531 2.965 10.538 Atomic orbital electron populations 1.22172 0.91924 1.03652 1.02284 1.21315 0.97473 0.91121 0.98172 1.21246 0.82169 0.88135 0.83486 1.90429 1.38990 1.79881 1.42300 1.43658 1.49785 1.05040 1.18524 1.18550 1.43682 0.85349 1.01803 0.93506 1.25640 0.96709 0.99318 0.94659 1.70503 1.32301 1.38897 0.99974 0.86091 0.81664 0.79682 0.77966 1.22048 1.19545 1.20520 1.22544 0.93094 0.96742 0.85156 1.23095 0.99763 0.99408 0.94847 1.21761 0.96059 0.98731 0.96641 1.21750 0.96894 0.98506 0.96016 1.23058 0.95299 1.04420 0.94021 1.22660 1.00257 0.95925 0.95602 1.22522 1.02021 0.94998 0.95417 1.22326 0.98428 0.97466 0.97365 1.22224 1.00141 0.96771 0.96139 0.92719 0.88751 0.92173 0.91830 0.89051 0.90870 0.93985 0.93338 0.91683 0.92337 0.93395 0.96379 0.86065 0.94061 0.89620 0.89020 0.90366 0.89264 0.93469 0.90088 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 7.83 71.98 0.56 -3.87 16 2 C -0.08 -2.83 0.61 -52.20 -0.03 -2.86 16 3 C 0.46 23.08 6.25 87.66 0.55 23.63 16 4 O -0.63 -37.36 15.23 -3.08 -0.05 -37.41 16 5 N -0.45 -22.84 2.55 -606.49 -1.55 -24.39 16 6 C -0.37 -20.68 7.51 84.04 0.63 -20.05 16 7 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 8 C 0.05 2.36 4.67 84.93 0.40 2.75 16 9 N -0.78 -37.29 5.95 21.67 0.13 -37.16 16 10 Si 0.92 43.22 29.69 68.60 2.04 45.26 16 11 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 14 C 0.13 5.31 1.45 46.28 0.07 5.38 16 15 C -0.13 -5.33 5.37 31.67 0.17 -5.16 16 16 C -0.09 -3.14 6.60 31.32 0.21 -2.94 16 17 C -0.09 -3.22 6.54 31.32 0.20 -3.01 16 18 C -0.13 -5.47 5.39 31.66 0.17 -5.30 16 19 C -0.11 -3.35 3.52 31.69 0.11 -3.24 16 20 C -0.11 -2.64 6.91 31.91 0.22 -2.42 16 21 C -0.12 -3.16 6.83 31.67 0.22 -2.94 16 22 C -0.11 -3.86 6.01 31.32 0.19 -3.68 16 23 H 0.05 1.66 7.81 -2.39 -0.02 1.64 16 24 H 0.09 2.19 7.98 -2.38 -0.02 2.17 16 25 H 0.06 2.07 5.02 -2.39 -0.01 2.05 16 26 H 0.27 12.13 8.31 -92.71 -0.77 11.36 16 27 H 0.09 3.38 3.10 -2.39 -0.01 3.38 16 28 H 0.07 3.49 5.16 -2.39 -0.01 3.48 16 29 H 0.04 1.56 5.46 -2.39 -0.01 1.55 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.12 5.94 3.89 -17.72 -0.07 5.87 16 36 H 0.04 1.53 6.73 -2.39 -0.02 1.52 16 37 H 0.09 2.42 6.00 -2.38 -0.01 2.41 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 2.30 7.51 -2.38 -0.02 2.28 16 43 H 0.05 2.03 6.40 -2.39 -0.02 2.02 16 Total: -1.00 -63.94 304.93 5.17 -58.76 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.94 Total: 18.64 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.66 Total: -23.71 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -1.42 Total: -61.55 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.05 Total: -37.41 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.04 Total: 45.26 kcal Total: -63.94 5.17 -58.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.639 kcal (2) G-P(sol) polarization free energy of solvation -63.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds