Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46950 * 300.00518 * 3 2 1 6 6 H 1.48496 * 109.46878 * 60.00030 * 3 2 1 7 7 C 1.37875 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47376 * 184.56395 * 9 7 2 11 11 C 1.46894 * 111.00212 * 158.98330 * 10 9 7 12 12 C 1.50699 * 109.47124 * 189.99473 * 11 10 9 13 13 O 1.20760 * 120.00064 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00301 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.46990 * 275.00512 * 14 12 11 16 16 C 1.53002 * 109.47144 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47043 * 59.99429 * 16 15 14 18 18 C 1.52995 * 109.47419 * 300.00611 * 17 16 15 19 19 C 1.52989 * 109.47230 * 155.00230 * 14 12 11 20 20 C 1.46904 * 110.99452 * 282.93563 * 10 9 7 21 21 C 1.52999 * 117.50208 * 7.80694 * 20 10 9 22 22 C 1.53002 * 60.00160 * 252.51139 * 21 20 10 23 23 H 0.97001 * 120.00478 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47303 * 64.55726 * 9 7 2 25 25 H 1.09004 * 109.46803 * 304.56055 * 9 7 2 26 26 H 1.08997 * 109.47186 * 309.99766 * 11 10 9 27 27 H 1.09003 * 109.47320 * 69.99845 * 11 10 9 28 28 H 1.09001 * 109.46986 * 34.99929 * 14 12 11 29 29 H 1.09001 * 109.46780 * 299.99543 * 15 14 12 30 30 H 1.09005 * 109.47523 * 59.99569 * 15 14 12 31 31 H 1.09001 * 109.47027 * 299.99537 * 16 15 14 32 32 H 1.09002 * 109.46890 * 179.97438 * 16 15 14 33 33 H 1.08997 * 109.47076 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46821 * 60.00605 * 17 16 15 35 35 H 1.09001 * 109.46610 * 299.99868 * 18 17 16 36 36 H 1.08999 * 109.46973 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47223 * 299.99654 * 19 14 12 38 38 H 1.09001 * 109.47382 * 59.99942 * 19 14 12 39 39 H 1.08993 * 115.54870 * 153.51456 * 20 10 9 40 40 H 1.09009 * 117.49453 * 0.02562 * 21 20 10 41 41 H 1.08997 * 117.50185 * 145.02111 * 21 20 10 42 42 H 1.08995 * 117.49791 * 252.51152 * 22 21 20 43 43 H 1.08993 * 117.51942 * 107.47885 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2019 -3.6136 0.1081 11 6 1.5367 -4.8263 0.6029 12 6 2.5737 -5.8680 0.9350 13 8 3.7460 -5.6251 0.7765 14 6 2.1480 -7.2126 1.4662 15 6 1.9614 -7.1261 2.9823 16 6 1.5286 -8.4910 3.5215 17 6 2.6031 -9.5311 3.1983 18 6 2.7897 -9.6175 1.6822 19 6 3.2229 -8.2522 1.1431 20 6 2.8682 -3.8655 -1.1766 21 6 2.6242 -2.8641 -2.3074 22 6 1.9868 -4.2538 -2.3655 23 1 -0.4851 0.8400 0.0004 24 1 0.6874 -2.5925 -0.9300 25 1 0.5642 -2.5229 0.8444 26 1 0.9629 -4.5865 1.4980 27 1 0.8669 -5.2125 -0.1655 28 1 1.2072 -7.5059 1.0005 29 1 2.9023 -6.8328 3.4480 30 1 1.1956 -6.3854 3.2125 31 1 0.5876 -8.7839 3.0558 32 1 1.3961 -8.4295 4.6017 33 1 2.2945 -10.5036 3.5820 34 1 3.5440 -9.2383 3.6641 35 1 1.8487 -9.9104 1.2165 36 1 3.5549 -10.3588 1.4520 37 1 3.3558 -8.3138 0.0630 38 1 4.1638 -7.9589 1.6088 39 1 3.8561 -4.3215 -1.1123 40 1 1.9695 -2.0181 -2.0978 41 1 3.4517 -2.6611 -2.9872 42 1 2.3950 -4.9651 -3.0834 43 1 0.9126 -4.3228 -2.1942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157931126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = -23.432183 kcal Electronic energy + Delta-G solvation = -20766.537083 eV Core-core repulsion = 17811.961880 eV Total energy + Delta-G solvation = -2954.575202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94140 -38.16069 -37.05389 -33.09531 -32.35085 -31.28952 -30.84543 -28.20716 -25.67932 -23.12656 -22.70391 -22.62714 -21.50416 -20.13277 -19.25103 -18.60447 -16.35919 -16.13534 -15.87104 -15.26584 -14.70071 -14.55520 -14.47396 -14.09239 -13.99608 -13.54906 -13.03696 -12.68706 -12.52962 -12.30412 -12.22054 -11.96910 -11.42879 -11.31146 -11.23210 -11.04584 -10.80537 -10.77565 -10.68537 -10.53074 -10.29246 -10.19544 -9.93748 -9.85852 -9.42527 -9.30051 -8.75111 -8.43315 -7.20605 -6.02276 -4.01396 2.40460 3.32512 3.40341 3.46960 4.11030 4.45676 4.57065 4.59406 4.63686 4.81811 4.99299 5.09108 5.13803 5.32828 5.34085 5.36124 5.40832 5.49826 5.60850 5.66078 5.72590 5.76771 5.85941 5.86749 5.91040 5.95205 5.99728 6.00643 6.07017 6.16416 6.20064 6.21399 6.34224 6.64626 6.74324 7.09294 7.18130 7.37795 7.82911 7.96949 8.10869 8.20125 8.51880 9.07518 9.61234 11.07988 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.004411 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.365203 B = 6345.658505 C = 6788.794617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.493 4.493 8 H 0.066 0.934 9 C 0.185 3.815 10 N -0.493 5.493 11 C 0.007 3.993 12 C 0.361 3.639 13 O -0.434 6.434 14 C -0.134 4.134 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.106 4.106 20 C 0.038 3.962 21 C -0.172 4.172 22 C -0.237 4.237 23 H 0.260 0.740 24 H 0.000 1.000 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -17.765 3.014 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.060 3.940 10 N -0.216 5.216 11 C -0.122 4.122 12 C 0.234 3.766 13 O -0.305 6.305 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.144 4.144 20 C -0.071 4.071 21 C -0.209 4.209 22 C -0.276 4.276 23 H 0.070 0.930 24 H 0.018 0.982 25 H 0.048 0.952 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.456 -17.358 3.296 17.838 hybrid contribution -0.464 0.707 -0.632 1.056 sum 1.992 -16.651 2.664 16.980 Atomic orbital electron populations 1.69958 1.06013 1.26656 1.51476 1.24970 0.94835 0.99231 0.95687 0.86464 0.80283 0.83452 0.77437 1.19561 1.21160 1.21099 1.21169 0.93811 0.89408 1.48793 0.91589 1.19930 0.90221 0.87626 0.96225 1.62039 1.31785 1.03402 1.24379 1.22513 0.95809 0.92431 1.01413 1.24655 0.90238 0.88335 0.73376 1.90322 1.20654 1.79684 1.39861 1.21744 1.00922 0.94966 0.97778 1.21437 1.02382 0.97746 0.92899 1.21523 0.98636 0.94645 1.00626 1.21558 0.99352 0.98766 0.96195 1.21541 1.01294 0.96973 0.95751 1.21418 0.98428 0.93552 1.00981 1.22681 0.97928 1.02877 0.83627 1.23515 1.03297 0.94268 0.99843 1.23354 0.99456 1.00294 1.04512 0.93025 0.98244 0.95201 0.88197 0.92541 0.89052 0.91391 0.91086 0.91808 0.91771 0.92207 0.91947 0.92029 0.92020 0.91947 0.91014 0.86919 0.84810 0.90139 0.90193 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.49 -13.69 7.00 -34.44 -0.24 -13.93 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.18 4.69 4.29 -4.97 -0.02 4.67 16 10 N -0.49 -10.89 4.38 -229.52 -1.01 -11.89 16 11 C 0.01 0.12 5.29 -4.98 -0.03 0.10 16 12 C 0.36 5.75 6.04 -29.03 -0.18 5.57 16 13 O -0.43 -8.30 14.42 6.00 0.09 -8.22 16 14 C -0.13 -1.58 2.45 -91.78 -0.22 -1.81 16 15 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 16 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 18 C -0.12 -1.04 5.92 -26.71 -0.16 -1.20 16 19 C -0.11 -1.19 4.74 -26.71 -0.13 -1.31 16 20 C 0.04 0.79 5.15 -67.71 -0.35 0.45 16 21 C -0.17 -3.55 9.01 -26.73 -0.24 -3.79 16 22 C -0.24 -4.34 9.25 -26.73 -0.25 -4.59 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.00 0.00 5.73 -51.93 -0.30 -0.30 16 25 H 0.03 0.81 7.71 -51.93 -0.40 0.41 16 26 H 0.10 1.67 7.82 -51.93 -0.41 1.27 16 27 H 0.06 0.93 7.14 -51.93 -0.37 0.56 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 39 H 0.11 2.35 7.00 -51.93 -0.36 1.99 16 40 H 0.13 3.22 4.92 -51.92 -0.26 2.96 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.08 1.58 7.18 -51.93 -0.37 1.21 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -30.15 333.78 -10.03 -40.18 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.49 Total: 1.80 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.36 Total: -18.08 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.27 Total: -37.39 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.15 -10.03 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157931126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.747 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds