Wall clock time and date at job start Mon Mar 30 2020 07:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46950 * 300.00518 * 3 2 1 6 6 H 1.48496 * 109.46878 * 60.00030 * 3 2 1 7 7 C 1.37875 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47376 * 184.56395 * 9 7 2 11 11 C 1.46894 * 111.00212 * 158.98330 * 10 9 7 12 12 C 1.50699 * 109.47124 * 189.99473 * 11 10 9 13 13 O 1.20760 * 120.00064 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00301 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.46990 * 275.00512 * 14 12 11 16 16 C 1.53002 * 109.47144 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47043 * 59.99429 * 16 15 14 18 18 C 1.52995 * 109.47419 * 300.00611 * 17 16 15 19 19 C 1.52989 * 109.47230 * 155.00230 * 14 12 11 20 20 C 1.46904 * 110.99452 * 282.93563 * 10 9 7 21 21 C 1.52999 * 117.50208 * 7.80694 * 20 10 9 22 22 C 1.53002 * 60.00160 * 252.51139 * 21 20 10 23 23 H 0.97001 * 120.00478 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47303 * 64.55726 * 9 7 2 25 25 H 1.09004 * 109.46803 * 304.56055 * 9 7 2 26 26 H 1.08997 * 109.47186 * 309.99766 * 11 10 9 27 27 H 1.09003 * 109.47320 * 69.99845 * 11 10 9 28 28 H 1.09001 * 109.46986 * 34.99929 * 14 12 11 29 29 H 1.09001 * 109.46780 * 299.99543 * 15 14 12 30 30 H 1.09005 * 109.47523 * 59.99569 * 15 14 12 31 31 H 1.09001 * 109.47027 * 299.99537 * 16 15 14 32 32 H 1.09002 * 109.46890 * 179.97438 * 16 15 14 33 33 H 1.08997 * 109.47076 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46821 * 60.00605 * 17 16 15 35 35 H 1.09001 * 109.46610 * 299.99868 * 18 17 16 36 36 H 1.08999 * 109.46973 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47223 * 299.99654 * 19 14 12 38 38 H 1.09001 * 109.47382 * 59.99942 * 19 14 12 39 39 H 1.08993 * 115.54870 * 153.51456 * 20 10 9 40 40 H 1.09009 * 117.49453 * 0.02562 * 21 20 10 41 41 H 1.08997 * 117.50185 * 145.02111 * 21 20 10 42 42 H 1.08995 * 117.49791 * 252.51152 * 22 21 20 43 43 H 1.08993 * 117.51942 * 107.47885 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2019 -3.6136 0.1081 11 6 1.5367 -4.8263 0.6029 12 6 2.5737 -5.8680 0.9350 13 8 3.7460 -5.6251 0.7765 14 6 2.1480 -7.2126 1.4662 15 6 1.9614 -7.1261 2.9823 16 6 1.5286 -8.4910 3.5215 17 6 2.6031 -9.5311 3.1983 18 6 2.7897 -9.6175 1.6822 19 6 3.2229 -8.2522 1.1431 20 6 2.8682 -3.8655 -1.1766 21 6 2.6242 -2.8641 -2.3074 22 6 1.9868 -4.2538 -2.3655 23 1 -0.4851 0.8400 0.0004 24 1 0.6874 -2.5925 -0.9300 25 1 0.5642 -2.5229 0.8444 26 1 0.9629 -4.5865 1.4980 27 1 0.8669 -5.2125 -0.1655 28 1 1.2072 -7.5059 1.0005 29 1 2.9023 -6.8328 3.4480 30 1 1.1956 -6.3854 3.2125 31 1 0.5876 -8.7839 3.0558 32 1 1.3961 -8.4295 4.6017 33 1 2.2945 -10.5036 3.5820 34 1 3.5440 -9.2383 3.6641 35 1 1.8487 -9.9104 1.2165 36 1 3.5549 -10.3588 1.4520 37 1 3.3558 -8.3138 0.0630 38 1 4.1638 -7.9589 1.6088 39 1 3.8561 -4.3215 -1.1123 40 1 1.9695 -2.0181 -2.0978 41 1 3.4517 -2.6611 -2.9872 42 1 2.3950 -4.9651 -3.0834 43 1 0.9126 -4.3228 -2.1942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157931126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:00 Heat of formation + Delta-G solvation = -40.175976 kcal Electronic energy + Delta-G solvation = -20767.263148 eV Core-core repulsion = 17811.961880 eV Total energy + Delta-G solvation = -2955.301268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20645 -39.57185 -38.22307 -35.03975 -34.12501 -32.28061 -31.62988 -29.99805 -27.32978 -24.66939 -24.17145 -23.45167 -23.03430 -21.23884 -20.45959 -20.02990 -18.40167 -17.67218 -17.27880 -16.52903 -16.33523 -16.01692 -15.51109 -15.32054 -14.96737 -14.86517 -14.39686 -14.29566 -13.78026 -13.69556 -13.31815 -13.12824 -13.02944 -12.77861 -12.67455 -12.63115 -12.13729 -12.05813 -12.01203 -11.85946 -11.59487 -11.51304 -11.33820 -11.31894 -10.97797 -10.96116 -10.59392 -10.12943 -8.93145 -8.17652 -6.24034 1.12251 1.39327 1.41148 1.54297 2.40670 2.85567 3.01087 3.13639 3.41973 3.75634 3.83264 3.99797 4.07908 4.14485 4.19849 4.29971 4.32183 4.46985 4.50978 4.52493 4.56526 4.62963 4.65955 4.73877 4.74167 4.99550 5.01546 5.02837 5.14955 5.18533 5.20660 5.27362 5.28233 5.28515 5.38183 5.42115 5.55710 5.58478 5.69377 6.07642 6.37020 6.52163 6.79289 6.88880 7.42655 8.92120 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.004411 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.365203 B = 6345.658505 C = 6788.794617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.204 3.796 10 N -0.513 5.513 11 C 0.000 4.000 12 C 0.368 3.632 13 O -0.471 6.471 14 C -0.124 4.124 15 C -0.108 4.108 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.105 4.105 20 C 0.028 3.972 21 C -0.186 4.186 22 C -0.205 4.205 23 H 0.264 0.736 24 H -0.016 1.016 25 H 0.007 0.993 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -19.445 2.950 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.078 3.922 10 N -0.236 5.236 11 C -0.128 4.128 12 C 0.244 3.756 13 O -0.344 6.344 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.081 4.081 21 C -0.223 4.223 22 C -0.244 4.244 23 H 0.073 0.927 24 H 0.002 0.998 25 H 0.025 0.975 26 H 0.123 0.877 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.130 0.870 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.298 -19.059 3.235 19.467 hybrid contribution -0.415 1.205 -0.614 1.414 sum 1.882 -17.854 2.621 18.143 Atomic orbital electron populations 1.70050 1.07295 1.27635 1.52250 1.25717 0.95636 1.02459 0.95253 0.85484 0.78889 0.79429 0.77754 1.19497 1.20291 1.20468 1.21319 0.93171 0.90919 1.48736 0.93056 1.19541 0.89953 0.88440 0.94249 1.61875 1.31466 1.04553 1.25658 1.22696 0.96725 0.91467 1.01916 1.24971 0.89067 0.89414 0.72185 1.90316 1.21890 1.80582 1.41649 1.21725 1.02011 0.92197 0.98440 1.21467 1.01705 0.99454 0.91911 1.21516 0.99175 0.93064 1.01219 1.21576 0.98947 0.99547 0.95824 1.21525 1.02141 0.95361 0.96024 1.21406 0.97355 0.94804 1.00671 1.22631 0.98401 1.03540 0.83560 1.23385 1.03883 0.94187 1.00868 1.23357 0.98904 0.98994 1.03180 0.92749 0.99808 0.97496 0.87740 0.90914 0.86737 0.93000 0.91061 0.90514 0.90863 0.90403 0.92766 0.90730 0.91155 0.92398 0.92969 0.87032 0.88469 0.88201 0.86972 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.50 -28.66 7.00 25.60 0.18 -28.48 16 8 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 9 C 0.20 10.67 4.29 85.56 0.37 11.04 16 10 N -0.51 -23.01 4.38 -880.06 -3.86 -26.87 16 11 C 0.00 0.00 5.29 85.56 0.45 0.45 16 12 C 0.37 11.56 6.04 29.10 0.18 11.73 16 13 O -0.47 -18.17 14.42 -1.45 -0.02 -18.19 16 14 C -0.12 -2.73 2.45 -11.54 -0.03 -2.76 16 15 C -0.11 -2.16 5.19 30.59 0.16 -2.00 16 16 C -0.11 -1.64 5.92 30.60 0.18 -1.46 16 17 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 18 C -0.11 -1.69 5.92 30.61 0.18 -1.51 16 19 C -0.10 -2.19 4.74 30.61 0.15 -2.05 16 20 C 0.03 1.15 5.15 44.92 0.23 1.38 16 21 C -0.19 -7.69 9.01 30.59 0.28 -7.41 16 22 C -0.21 -7.24 9.25 30.60 0.28 -6.96 16 23 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 24 H -0.02 -0.86 5.73 -2.39 -0.01 -0.87 16 25 H 0.01 0.39 7.71 -2.38 -0.02 0.37 16 26 H 0.10 3.52 7.82 -2.39 -0.02 3.50 16 27 H 0.07 2.31 7.14 -2.39 -0.02 2.29 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.29 7.87 -2.39 -0.02 1.27 16 39 H 0.11 4.65 7.00 -2.39 -0.02 4.63 16 40 H 0.10 4.81 4.92 -2.38 -0.01 4.80 16 41 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.08 2.92 7.18 -2.39 -0.02 2.90 16 Total: -1.00 -66.02 333.78 2.64 -63.38 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.96 Total: 18.12 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.25 Total: -28.67 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -3.57 Total: -81.69 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.02 Total: -18.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.02 2.64 -63.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157931126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds