Wall clock time and date at job start Mon Mar 30 2020 08:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48499 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46934 * 299.99388 * 3 2 1 6 6 H 1.48493 * 109.47277 * 59.99389 * 3 2 1 7 7 C 1.37877 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46936 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99862 * 66.05037 * 11 10 9 13 13 C 1.53044 * 109.51335 * 174.15436 * 12 11 10 14 14 C 1.53119 * 109.27589 * 59.18419 * 13 12 11 15 15 C 1.53120 * 109.16202 * 302.34077 * 14 13 12 16 16 C 1.46847 * 110.99299 * 301.84195 * 11 10 9 17 17 H 1.09005 * 109.46836 * 65.83946 * 16 11 10 18 18 C 1.52994 * 109.45537 * 305.85776 * 16 11 10 19 19 H 1.08994 * 109.97363 * 59.78145 * 18 16 11 20 20 C 1.54285 * 109.98286 * 181.09364 * 18 16 11 21 21 C 1.54981 * 103.75293 * 142.47075 * 20 18 16 22 22 C 1.54893 * 102.33249 * 322.91353 * 21 20 18 23 23 C 1.51446 * 109.98176 * 298.50567 * 18 16 11 24 24 O 1.20759 * 126.34479 * 61.03328 * 23 18 16 25 25 H 0.97003 * 120.00019 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47397 * 60.00214 * 9 7 2 27 27 H 1.08997 * 109.47038 * 299.99979 * 9 7 2 28 28 H 1.09004 * 109.47161 * 60.00156 * 10 9 7 29 29 H 1.08996 * 109.47358 * 300.00508 * 10 9 7 30 30 H 1.09002 * 109.46448 * 54.14158 * 12 11 10 31 31 H 1.08994 * 109.45958 * 294.16523 * 12 11 10 32 32 H 1.09000 * 109.49745 * 179.12223 * 13 12 11 33 33 H 1.08999 * 109.49729 * 299.20033 * 13 12 11 34 34 H 1.08993 * 109.52284 * 62.25342 * 14 13 12 35 35 H 1.09003 * 109.51690 * 182.37761 * 14 13 12 36 36 H 1.08996 * 109.50328 * 177.59853 * 15 14 13 37 37 H 1.08996 * 109.50004 * 297.72216 * 15 14 13 38 38 H 1.08999 * 110.56429 * 261.03638 * 20 18 16 39 39 H 1.08996 * 110.57056 * 23.90311 * 20 18 16 40 40 H 1.08999 * 110.83291 * 204.70617 * 21 20 18 41 41 H 1.08995 * 111.00792 * 81.19725 * 21 20 18 42 42 H 1.09006 * 110.44092 * 278.88615 * 22 21 20 43 43 H 1.09003 * 110.54974 * 156.41776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.7653 -5.1120 -1.2515 13 6 0.1331 -6.5056 -1.2767 14 6 -0.8056 -6.6566 -0.0764 15 6 -0.0148 -6.4188 1.2131 16 6 0.6217 -5.0278 1.1662 17 1 -0.1607 -4.2729 1.0877 18 6 1.4298 -4.7936 2.4440 19 1 1.8897 -3.8057 2.4178 20 6 0.5121 -4.9164 3.6781 21 6 1.4065 -5.6137 4.7344 22 6 2.2200 -6.6110 3.8726 23 6 2.4978 -5.8583 2.5834 24 8 3.4029 -6.0693 1.8124 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 1.4451 -5.0063 -2.0969 31 1 -0.0177 -4.3567 -1.3184 32 1 -0.4331 -6.6316 -2.1995 33 1 0.9166 -7.2615 -1.2242 34 1 -1.6111 -5.9261 -0.1497 35 1 -1.2256 -7.6624 -0.0669 36 1 -0.6866 -6.4829 2.0690 37 1 0.7663 -7.1734 1.3053 38 1 0.2054 -3.9303 4.0269 39 1 -0.3587 -5.5303 3.4483 40 1 0.7988 -6.1421 5.4689 41 1 2.0657 -4.8963 5.2231 42 1 1.6329 -7.5071 3.6713 43 1 3.1542 -6.8727 4.3696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227379531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:47 Heat of formation + Delta-G solvation = -74.038269 kcal Electronic energy + Delta-G solvation = -21722.041885 eV Core-core repulsion = 18765.272238 eV Total energy + Delta-G solvation = -2956.769647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57781 -39.40397 -37.00781 -35.91756 -34.36629 -32.59215 -30.81091 -28.90110 -27.53066 -26.76162 -24.60378 -23.87464 -22.24334 -21.62518 -20.72899 -19.18006 -18.61607 -17.24541 -16.93232 -16.58360 -16.51997 -16.04637 -15.52812 -15.13081 -15.01601 -14.69391 -14.35231 -14.15859 -14.02584 -13.92268 -13.51960 -13.43877 -13.10692 -12.86557 -12.61983 -12.45257 -12.27764 -12.13052 -11.99017 -11.96483 -11.65450 -11.62276 -11.54806 -11.32003 -11.16649 -10.88442 -10.59518 -10.15238 -9.01859 -8.24857 -6.37063 1.16924 1.34443 1.35002 1.48604 2.35625 3.00165 3.06847 3.37692 3.59900 3.75343 3.94278 3.97051 4.10013 4.18564 4.21883 4.37401 4.43055 4.49024 4.52158 4.64665 4.69674 4.70190 4.74139 4.87189 4.93181 4.96942 5.01221 5.05026 5.07808 5.08780 5.18492 5.22662 5.27043 5.27704 5.42640 5.46739 5.49862 5.56388 5.73140 6.02812 6.32586 6.35112 6.77208 6.79212 7.32042 8.85739 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.006579 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.918102 B = 4255.082356 C = 4992.152225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.010 3.990 10 C 0.078 3.922 11 N -0.527 5.527 12 C 0.051 3.949 13 C -0.108 4.108 14 C -0.118 4.118 15 C -0.108 4.108 16 C 0.098 3.902 17 H 0.025 0.975 18 C -0.157 4.157 19 H 0.071 0.929 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.173 4.173 23 C 0.374 3.626 24 O -0.467 6.467 25 H 0.264 0.736 26 H -0.013 1.013 27 H 0.000 1.000 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -15.629 8.214 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.028 4.028 10 C -0.050 4.050 11 N -0.250 5.250 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.011 4.011 17 H 0.043 0.957 18 C -0.176 4.176 19 H 0.089 0.911 20 C -0.153 4.153 21 C -0.145 4.145 22 C -0.210 4.210 23 C 0.250 3.750 24 O -0.340 6.340 25 H 0.073 0.927 26 H 0.005 0.995 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.142 0.858 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.430 -16.030 7.823 17.894 hybrid contribution -0.183 2.362 -0.566 2.436 sum -1.612 -13.667 7.257 15.559 Atomic orbital electron populations 1.70094 1.07636 1.27682 1.51413 1.25907 0.95748 1.03084 0.94490 0.85445 0.78987 0.78912 0.78016 1.18989 1.20216 1.19952 1.21596 0.93267 0.92462 1.50932 0.92846 1.19446 0.94856 0.93753 0.94762 1.21954 0.95955 0.87064 1.00065 1.62361 1.27374 1.32932 1.02307 1.22105 0.95999 0.97563 0.92075 1.21558 0.98807 0.94973 0.99211 1.21583 0.97399 1.02585 0.94018 1.21775 0.99436 0.94221 0.99141 1.21470 0.92837 0.97863 0.88899 0.95675 1.22555 0.97998 1.00004 0.97051 0.91125 1.22456 0.98091 1.02035 0.92710 1.22413 0.97915 0.97444 0.96762 1.22935 1.03351 1.00454 0.94254 1.25196 0.81569 0.82653 0.85584 1.90380 1.31094 1.65458 1.47092 0.92725 0.99467 0.98218 0.92674 0.93373 0.92021 0.96942 0.90247 0.91301 0.92925 0.89045 0.88567 0.91589 0.91506 0.88543 0.87268 0.91143 0.85798 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.97 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.01 0.56 4.18 29.85 0.12 0.68 16 10 C 0.08 3.64 4.74 86.30 0.41 4.05 16 11 N -0.53 -20.81 3.84 -871.10 -3.34 -24.15 16 12 C 0.05 1.87 5.05 86.33 0.44 2.31 16 13 C -0.11 -2.95 6.09 30.65 0.19 -2.77 16 14 C -0.12 -2.85 6.00 30.67 0.18 -2.67 16 15 C -0.11 -2.73 4.85 30.65 0.15 -2.59 16 16 C 0.10 3.37 1.08 44.94 0.05 3.42 16 17 H 0.03 1.03 6.61 -2.38 -0.02 1.02 16 18 C -0.16 -5.00 2.09 -10.87 -0.02 -5.02 16 19 H 0.07 2.82 6.12 -2.39 -0.01 2.81 16 20 C -0.12 -2.60 6.22 31.71 0.20 -2.41 16 21 C -0.11 -1.78 6.95 31.92 0.22 -1.55 16 22 C -0.17 -3.24 6.72 30.86 0.21 -3.03 16 23 C 0.37 11.32 5.71 29.71 0.17 11.49 16 24 O -0.47 -17.99 17.18 -1.45 -0.02 -18.01 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.78 6.68 -2.39 -0.02 -0.79 16 27 H 0.00 -0.03 6.25 -2.39 -0.01 -0.04 16 28 H 0.05 2.66 6.13 -2.38 -0.01 2.65 16 29 H 0.05 2.32 8.06 -2.39 -0.02 2.30 16 30 H 0.06 2.29 8.06 -2.39 -0.02 2.28 16 31 H 0.01 0.52 6.76 -2.39 -0.02 0.50 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.88 6.06 -2.39 -0.01 1.86 16 37 H 0.07 1.66 7.17 -2.39 -0.02 1.65 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.80 5.69 -2.39 -0.01 1.78 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -71.33 322.32 2.93 -68.40 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.98 Total: 12.35 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.01 Total: -29.24 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.06 Total: -80.84 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.02 Total: -18.01 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.33 2.93 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227379531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.636 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds