Wall clock time and date at job start Mon Mar 30 2020 08:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48491 * 109.47241 * 239.99789 * 3 2 1 5 5 H 1.48504 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47132 * 119.99672 * 3 2 1 7 7 C 1.37875 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47270 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47527 * 180.02562 * 10 9 7 12 12 C 1.46849 * 111.00272 * 294.10196 * 11 10 9 13 13 C 1.53031 * 109.52790 * 185.83889 * 12 11 10 14 14 C 1.53125 * 109.27691 * 300.82027 * 13 12 11 15 15 C 1.53123 * 109.15908 * 57.65109 * 14 13 12 16 16 C 1.46932 * 110.98609 * 58.33132 * 11 10 9 17 17 H 1.09006 * 109.44959 * 294.15804 * 16 11 10 18 18 C 1.52992 * 109.51679 * 54.15719 * 16 11 10 19 19 H 1.09004 * 109.97485 * 296.79649 * 18 16 11 20 20 C 1.54278 * 109.98663 * 58.07085 * 18 16 11 21 21 C 1.54985 * 103.75116 * 142.46919 * 20 18 16 22 22 C 1.54884 * 102.33311 * 322.91620 * 21 20 18 23 23 C 1.51448 * 109.98417 * 175.52883 * 18 16 11 24 24 O 1.20764 * 126.34165 * 60.98256 * 23 18 16 25 25 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47507 * 60.00174 * 9 7 2 27 27 H 1.08999 * 109.47004 * 299.99838 * 9 7 2 28 28 H 1.09001 * 109.47202 * 59.99520 * 10 9 7 29 29 H 1.09002 * 109.46693 * 300.00562 * 10 9 7 30 30 H 1.09002 * 109.46144 * 65.81621 * 12 11 10 31 31 H 1.09009 * 109.44874 * 305.84989 * 12 11 10 32 32 H 1.08996 * 109.50837 * 180.87738 * 13 12 11 33 33 H 1.09000 * 109.50323 * 60.75601 * 13 12 11 34 34 H 1.08994 * 109.52048 * 297.75203 * 14 13 12 35 35 H 1.09004 * 109.52200 * 177.55518 * 14 13 12 36 36 H 1.08999 * 109.50025 * 62.29127 * 15 14 13 37 37 H 1.09003 * 109.50087 * 182.36221 * 15 14 13 38 38 H 1.09000 * 110.56669 * 261.03930 * 20 18 16 39 39 H 1.09001 * 110.56880 * 23.75362 * 20 18 16 40 40 H 1.09005 * 110.82968 * 81.12653 * 21 20 18 41 41 H 1.08996 * 110.82956 * 204.70020 * 21 20 18 42 42 H 1.09004 * 110.44067 * 156.36761 * 22 21 20 43 43 H 1.09000 * 110.43977 * 278.76060 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5108 -4.9342 0.0012 12 6 0.7614 -5.1099 1.2518 13 6 0.1290 -6.5032 1.2777 14 6 -0.8060 -6.6564 0.0748 15 6 -0.0113 -6.4210 -1.2126 16 6 0.6252 -5.0300 -1.1674 17 1 -0.1573 -4.2749 -1.0926 18 6 1.4364 -4.7988 -2.4437 19 1 1.8466 -3.7888 -2.4464 20 6 2.5784 -5.8319 -2.5372 21 6 2.6492 -6.1671 -4.0487 22 6 1.1568 -6.1458 -4.4625 23 6 0.5574 -5.0035 -3.6599 24 8 -0.4357 -4.3757 -3.9390 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5566 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6046 -0.8877 30 1 -0.0217 -4.3543 1.3152 31 1 1.4389 -5.0028 2.0990 32 1 -0.4400 -6.6276 2.1990 33 1 0.9124 -7.2594 1.2283 34 1 -1.6116 -5.9255 0.1443 35 1 -1.2254 -7.6625 0.0652 36 1 0.7699 -7.1759 -1.3012 37 1 -0.6803 -6.4873 -2.0706 38 1 3.5178 -5.3961 -2.1971 39 1 2.3380 -6.7221 -1.9560 40 1 3.2121 -5.4056 -4.5887 41 1 3.0813 -7.1551 -4.2068 42 1 1.0607 -5.9516 -5.5308 43 1 0.6764 -7.0893 -4.2033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227379542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:52 Heat of formation + Delta-G solvation = -57.783495 kcal Electronic energy + Delta-G solvation = -21639.002977 eV Core-core repulsion = 18682.938191 eV Total energy + Delta-G solvation = -2956.064787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33985 -38.30449 -35.79639 -34.23334 -32.45147 -31.41639 -28.93995 -27.70580 -26.60894 -24.92730 -22.88157 -22.56621 -21.03846 -20.57082 -19.11717 -17.98608 -16.47672 -16.22401 -15.74360 -14.98841 -14.68134 -14.51453 -14.34588 -14.06931 -13.81790 -13.41499 -13.12326 -12.67591 -12.62302 -12.39690 -12.16548 -11.90752 -11.41870 -11.35727 -11.23807 -11.04430 -10.93138 -10.86721 -10.68085 -10.60219 -10.26302 -10.09254 -9.89126 -9.83119 -9.58701 -9.17461 -9.07618 -8.34095 -7.48516 -5.99958 -4.03556 2.17602 3.32465 3.37315 3.39135 4.17611 4.44708 4.59716 4.68634 4.86774 4.99756 5.09501 5.11147 5.21833 5.35131 5.38628 5.49372 5.55963 5.64912 5.71805 5.79793 5.84594 5.91824 5.94500 6.02794 6.06822 6.13700 6.21404 6.23150 6.32182 6.33148 6.41861 6.44792 6.55177 6.63090 6.72139 6.93194 7.55232 7.55607 7.70096 7.75366 7.86375 8.00853 8.41961 9.03582 9.60737 11.10879 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.006639 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.343007 B = 4216.272376 C = 5002.380061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C -0.010 4.010 10 C 0.053 3.947 11 N -0.531 5.531 12 C 0.053 3.947 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.116 4.116 16 C 0.101 3.899 17 H 0.057 0.943 18 C -0.148 4.148 19 H 0.113 0.887 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.182 4.182 23 C 0.373 3.627 24 O -0.442 6.442 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -16.125 -3.947 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.048 4.048 10 C -0.074 4.074 11 N -0.255 5.255 12 C -0.075 4.075 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.153 4.153 16 C -0.007 4.007 17 H 0.075 0.925 18 C -0.167 4.167 19 H 0.131 0.869 20 C -0.140 4.140 21 C -0.161 4.161 22 C -0.220 4.220 23 C 0.247 3.753 24 O -0.314 6.314 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.692 -16.053 -4.115 16.789 hybrid contribution -0.149 1.794 0.084 1.802 sum 2.543 -14.259 -4.031 15.035 Atomic orbital electron populations 1.69960 1.06070 1.26711 1.50390 1.25022 0.94807 0.99241 0.95234 0.86678 0.79601 0.83251 0.78595 1.20237 1.21309 1.20240 1.21104 0.92894 0.90960 1.51104 0.92709 1.19663 0.94980 0.92730 0.97390 1.22378 0.97001 0.86960 1.01052 1.62348 1.26816 1.35383 1.00914 1.22029 0.97074 0.95826 0.92561 1.21578 0.98437 0.97756 0.97386 1.21552 0.98160 1.00967 0.95064 1.21767 0.98897 0.97401 0.97279 1.21325 0.93855 0.96415 0.89154 0.92524 1.22444 0.97009 1.02917 0.94330 0.86943 1.22283 0.97980 0.98978 0.94767 1.22475 0.94330 1.02053 0.97236 1.22921 0.98024 0.99795 1.01251 1.24992 0.82631 0.81406 0.86292 1.90427 1.23090 1.46659 1.71213 0.92946 0.96232 0.96620 0.92048 0.91689 0.94040 0.91131 0.92167 0.91598 0.92227 0.92336 0.90834 0.92640 0.90670 0.89996 0.91082 0.90755 0.89651 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C -0.01 -0.24 4.18 -27.88 -0.12 -0.36 16 10 C 0.05 1.07 4.73 -3.83 -0.02 1.05 16 11 N -0.53 -9.07 4.25 -226.63 -0.96 -10.03 16 12 C 0.05 0.88 5.05 -3.84 -0.02 0.86 16 13 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 14 C -0.12 -1.58 6.00 -26.60 -0.16 -1.74 16 15 C -0.12 -1.59 4.84 -26.65 -0.13 -1.72 16 16 C 0.10 1.71 1.10 -67.68 -0.07 1.63 16 17 H 0.06 1.20 6.61 -51.93 -0.34 0.86 16 18 C -0.15 -2.32 2.06 -90.74 -0.19 -2.51 16 19 H 0.11 2.08 6.29 -51.93 -0.33 1.76 16 20 C -0.10 -1.24 5.65 -25.01 -0.14 -1.38 16 21 C -0.12 -1.21 6.95 -24.69 -0.17 -1.38 16 22 C -0.18 -1.99 6.72 -26.28 -0.18 -2.17 16 23 C 0.37 5.84 5.76 -28.06 -0.16 5.67 16 24 O -0.44 -8.74 17.99 6.00 0.11 -8.64 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.54 6.22 -51.93 -0.32 0.22 16 27 H 0.02 0.43 6.68 -51.93 -0.35 0.08 16 28 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.06 1.27 6.00 -51.93 -0.31 0.96 16 30 H 0.04 0.80 6.75 -51.93 -0.35 0.45 16 31 H 0.07 1.13 8.07 -51.92 -0.42 0.71 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 37 H 0.05 0.76 7.15 -51.93 -0.37 0.39 16 38 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 39 H 0.08 0.95 5.87 -51.93 -0.30 0.64 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -31.34 323.00 -9.37 -40.71 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.17 Total: -0.10 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.93 Total: -17.13 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.23 Total: -36.59 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.11 Total: -8.64 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.34 -9.37 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227379542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.070 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds