Wall clock time and date at job start Mon Mar 30 2020 08:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48491 * 109.47241 * 239.99789 * 3 2 1 5 5 H 1.48504 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47132 * 119.99672 * 3 2 1 7 7 C 1.37875 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47270 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47527 * 180.02562 * 10 9 7 12 12 C 1.46849 * 111.00272 * 294.10196 * 11 10 9 13 13 C 1.53031 * 109.52790 * 185.83889 * 12 11 10 14 14 C 1.53125 * 109.27691 * 300.82027 * 13 12 11 15 15 C 1.53123 * 109.15908 * 57.65109 * 14 13 12 16 16 C 1.46932 * 110.98609 * 58.33132 * 11 10 9 17 17 H 1.09006 * 109.44959 * 294.15804 * 16 11 10 18 18 C 1.52992 * 109.51679 * 54.15719 * 16 11 10 19 19 H 1.09004 * 109.97485 * 296.79649 * 18 16 11 20 20 C 1.54278 * 109.98663 * 58.07085 * 18 16 11 21 21 C 1.54985 * 103.75116 * 142.46919 * 20 18 16 22 22 C 1.54884 * 102.33311 * 322.91620 * 21 20 18 23 23 C 1.51448 * 109.98417 * 175.52883 * 18 16 11 24 24 O 1.20764 * 126.34165 * 60.98256 * 23 18 16 25 25 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47507 * 60.00174 * 9 7 2 27 27 H 1.08999 * 109.47004 * 299.99838 * 9 7 2 28 28 H 1.09001 * 109.47202 * 59.99520 * 10 9 7 29 29 H 1.09002 * 109.46693 * 300.00562 * 10 9 7 30 30 H 1.09002 * 109.46144 * 65.81621 * 12 11 10 31 31 H 1.09009 * 109.44874 * 305.84989 * 12 11 10 32 32 H 1.08996 * 109.50837 * 180.87738 * 13 12 11 33 33 H 1.09000 * 109.50323 * 60.75601 * 13 12 11 34 34 H 1.08994 * 109.52048 * 297.75203 * 14 13 12 35 35 H 1.09004 * 109.52200 * 177.55518 * 14 13 12 36 36 H 1.08999 * 109.50025 * 62.29127 * 15 14 13 37 37 H 1.09003 * 109.50087 * 182.36221 * 15 14 13 38 38 H 1.09000 * 110.56669 * 261.03930 * 20 18 16 39 39 H 1.09001 * 110.56880 * 23.75362 * 20 18 16 40 40 H 1.09005 * 110.82968 * 81.12653 * 21 20 18 41 41 H 1.08996 * 110.82956 * 204.70020 * 21 20 18 42 42 H 1.09004 * 110.44067 * 156.36761 * 22 21 20 43 43 H 1.09000 * 110.43977 * 278.76060 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5108 -4.9342 0.0012 12 6 0.7614 -5.1099 1.2518 13 6 0.1290 -6.5032 1.2777 14 6 -0.8060 -6.6564 0.0748 15 6 -0.0113 -6.4210 -1.2126 16 6 0.6252 -5.0300 -1.1674 17 1 -0.1573 -4.2749 -1.0926 18 6 1.4364 -4.7988 -2.4437 19 1 1.8466 -3.7888 -2.4464 20 6 2.5784 -5.8319 -2.5372 21 6 2.6492 -6.1671 -4.0487 22 6 1.1568 -6.1458 -4.4625 23 6 0.5574 -5.0035 -3.6599 24 8 -0.4357 -4.3757 -3.9390 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5566 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6046 -0.8877 30 1 -0.0217 -4.3543 1.3152 31 1 1.4389 -5.0028 2.0990 32 1 -0.4400 -6.6276 2.1990 33 1 0.9124 -7.2594 1.2283 34 1 -1.6116 -5.9255 0.1443 35 1 -1.2254 -7.6625 0.0652 36 1 0.7699 -7.1759 -1.3012 37 1 -0.6803 -6.4873 -2.0706 38 1 3.5178 -5.3961 -2.1971 39 1 2.3380 -6.7221 -1.9560 40 1 3.2121 -5.4056 -4.5887 41 1 3.0813 -7.1551 -4.2068 42 1 1.0607 -5.9516 -5.5308 43 1 0.6764 -7.0893 -4.2033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227379542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:52 Heat of formation + Delta-G solvation = -77.693816 kcal Electronic energy + Delta-G solvation = -21639.866354 eV Core-core repulsion = 18682.938191 eV Total energy + Delta-G solvation = -2956.928163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63127 -39.69485 -36.96611 -35.93722 -34.37136 -32.60769 -30.82872 -28.81673 -27.75799 -26.73017 -24.56441 -23.90039 -22.25391 -21.91806 -20.37053 -19.35871 -18.63057 -17.46446 -17.00515 -16.58995 -16.26839 -15.99797 -15.71509 -15.41666 -15.06709 -14.88680 -14.30689 -14.22222 -14.10171 -13.92488 -13.58322 -13.26793 -13.05831 -12.81462 -12.67896 -12.56690 -12.44771 -12.13235 -11.95083 -11.87795 -11.71279 -11.49859 -11.44750 -11.30440 -11.17091 -10.96047 -10.59711 -10.38289 -9.13583 -8.25384 -6.39028 0.90839 1.33451 1.37434 1.45265 2.34732 2.90140 3.06794 3.36603 3.55820 3.74996 3.90096 3.93286 4.07322 4.17926 4.25586 4.34387 4.40586 4.51544 4.53994 4.66356 4.68739 4.73231 4.73978 4.86860 4.92380 4.99372 5.01993 5.04305 5.05455 5.10073 5.19240 5.23781 5.24812 5.37109 5.43345 5.48152 5.54718 5.59316 5.72615 5.99536 6.24063 6.30758 6.52416 6.80144 7.31079 8.85504 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.006639 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.343007 B = 4216.272376 C = 5002.380061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.068 3.932 11 N -0.508 5.508 12 C 0.047 3.953 13 C -0.103 4.103 14 C -0.122 4.122 15 C -0.108 4.108 16 C 0.103 3.897 17 H -0.007 1.007 18 C -0.155 4.155 19 H 0.071 0.929 20 C -0.093 4.093 21 C -0.112 4.112 22 C -0.169 4.169 23 C 0.366 3.634 24 O -0.498 6.498 25 H 0.262 0.738 26 H -0.019 1.019 27 H -0.018 1.018 28 H 0.067 0.933 29 H 0.073 0.927 30 H -0.002 1.002 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -18.955 -4.442 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.033 4.033 10 C -0.060 4.060 11 N -0.231 5.231 12 C -0.081 4.081 13 C -0.141 4.141 14 C -0.159 4.159 15 C -0.145 4.145 16 C -0.006 4.006 17 H 0.011 0.989 18 C -0.174 4.174 19 H 0.089 0.911 20 C -0.130 4.130 21 C -0.149 4.149 22 C -0.206 4.206 23 C 0.244 3.756 24 O -0.374 6.374 25 H 0.070 0.930 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.130 -18.913 -4.603 20.130 hybrid contribution -0.955 2.710 0.271 2.886 sum 4.175 -16.203 -4.332 17.284 Atomic orbital electron populations 1.70138 1.08148 1.27751 1.51622 1.26070 0.95690 1.03734 0.94612 0.85476 0.78241 0.77778 0.79448 1.18993 1.21098 1.18597 1.21621 0.93671 0.92139 1.50617 0.91570 1.19470 0.95107 0.94807 0.93918 1.22135 0.95893 0.86383 1.01578 1.62454 1.26612 1.32490 1.01495 1.22170 0.96126 0.97363 0.92421 1.21543 0.98978 0.95353 0.98191 1.21603 0.97456 1.02111 0.94756 1.21754 0.99608 0.95394 0.97783 1.21324 0.92489 0.97080 0.89735 0.98870 1.22525 0.98497 1.02255 0.94144 0.91093 1.22268 0.95762 0.97860 0.97152 1.22502 0.93414 1.04155 0.94833 1.22945 0.98452 0.98195 1.01011 1.25732 0.81357 0.81954 0.86558 1.90401 1.25530 1.49054 1.72409 0.92957 1.00052 0.99964 0.91436 0.90913 0.98355 0.90441 0.90504 0.89098 0.94997 0.88799 0.87576 0.92585 0.90838 0.88397 0.91131 0.86934 0.88290 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.48 13.29 21.45 0.28 -60.19 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.88 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.01 0.29 4.18 29.85 0.12 0.42 16 10 C 0.07 2.85 4.73 86.30 0.41 3.26 16 11 N -0.51 -17.73 4.25 -870.92 -3.71 -21.43 16 12 C 0.05 1.61 5.05 86.32 0.44 2.04 16 13 C -0.10 -2.53 6.09 30.65 0.19 -2.34 16 14 C -0.12 -3.05 6.00 30.68 0.18 -2.87 16 15 C -0.11 -2.83 4.84 30.65 0.15 -2.68 16 16 C 0.10 3.64 1.10 44.92 0.05 3.69 16 17 H -0.01 -0.32 6.61 -2.38 -0.02 -0.34 16 18 C -0.15 -5.01 2.06 -10.87 -0.02 -5.03 16 19 H 0.07 2.86 6.29 -2.38 -0.01 2.85 16 20 C -0.09 -2.01 5.65 31.71 0.18 -1.83 16 21 C -0.11 -1.74 6.95 31.92 0.22 -1.52 16 22 C -0.17 -3.18 6.72 30.88 0.21 -2.97 16 23 C 0.37 11.70 5.76 29.73 0.17 11.87 16 24 O -0.50 -21.08 17.99 -1.46 -0.03 -21.10 16 25 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 26 H -0.02 -1.18 6.22 -2.39 -0.01 -1.19 16 27 H -0.02 -1.10 6.68 -2.39 -0.02 -1.11 16 28 H 0.07 2.75 8.07 -2.39 -0.02 2.74 16 29 H 0.07 2.95 6.00 -2.39 -0.01 2.93 16 30 H 0.00 -0.08 6.75 -2.39 -0.02 -0.10 16 31 H 0.08 2.49 8.07 -2.38 -0.02 2.47 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.11 2.13 6.17 -2.39 -0.01 2.12 16 37 H 0.06 1.48 7.15 -2.39 -0.02 1.46 16 38 H 0.07 1.64 7.86 -2.39 -0.02 1.62 16 39 H 0.10 1.82 5.87 -2.39 -0.01 1.80 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.88 323.00 2.55 -73.33 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.98 Total: 10.85 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 2.99 Total: -29.36 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -3.42 Total: -81.62 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.03 Total: -21.10 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.88 2.55 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227379542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.364 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds