Wall clock time and date at job start Mon Mar 30 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99931 * 2 1 4 4 H 1.08998 * 109.47202 * 327.73324 * 3 2 1 5 5 C 1.50694 * 109.47305 * 87.73751 * 3 2 1 6 6 N 1.31315 * 126.07975 * 64.97767 * 5 3 2 7 7 N 1.28561 * 110.20708 * 180.02562 * 6 5 3 8 8 C 1.33023 * 109.35847 * 359.97438 * 7 6 5 9 9 C 1.40131 * 126.65964 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00092 * 180.02562 * 9 8 7 11 11 C 1.40236 * 119.99952 * 359.74640 * 9 8 7 12 12 N 1.30693 * 119.99904 * 0.28039 * 11 9 8 13 13 Si 1.86792 * 120.00115 * 180.27284 * 11 9 8 14 14 H 1.48500 * 109.47397 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47204 * 120.00133 * 13 11 9 16 16 H 1.48503 * 109.47670 * 240.00152 * 13 11 9 17 17 N 1.35297 * 126.07705 * 245.24784 * 5 3 2 18 18 H 0.96998 * 127.04884 * 0.02562 * 17 5 3 19 19 C 1.53004 * 109.46764 * 207.73752 * 3 2 1 20 20 C 1.53008 * 109.46930 * 174.86967 * 19 3 2 21 21 C 1.53000 * 109.47146 * 179.97438 * 20 19 3 22 22 C 1.53005 * 109.46714 * 60.00135 * 21 20 19 23 23 C 1.52996 * 109.47434 * 300.00026 * 22 21 20 24 24 C 1.52995 * 109.47319 * 54.87321 * 19 3 2 25 25 H 1.08998 * 109.47267 * 64.49644 * 1 2 3 26 26 H 1.09000 * 109.47278 * 184.50540 * 1 2 3 27 27 H 1.09000 * 109.47047 * 304.50253 * 1 2 3 28 28 H 0.96996 * 120.00088 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.47030 * 294.87144 * 19 3 2 30 30 H 1.08997 * 109.47408 * 299.99945 * 20 19 3 31 31 H 1.09001 * 109.46613 * 60.00061 * 20 19 3 32 32 H 1.09006 * 109.47241 * 300.00431 * 21 20 19 33 33 H 1.08993 * 109.47330 * 180.02562 * 21 20 19 34 34 H 1.08996 * 109.46642 * 179.97438 * 22 21 20 35 35 H 1.08997 * 109.47110 * 60.00223 * 22 21 20 36 36 H 1.09006 * 109.47127 * 300.00075 * 23 22 21 37 37 H 1.09001 * 109.47324 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.47509 * 299.99971 * 24 19 3 39 39 H 1.09006 * 109.47129 * 59.99877 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3641 1.9908 -0.5486 5 6 2.1633 1.7872 1.4196 6 7 2.9422 1.2594 2.3356 7 7 2.8353 1.9111 3.4386 8 6 1.9675 2.9068 3.2802 9 6 1.5800 3.8411 4.2500 10 1 0.8622 4.6094 4.0032 11 6 2.1198 3.7750 5.5426 12 7 2.9884 2.8453 5.8412 13 14 1.5975 5.0158 6.8375 14 1 0.6103 5.9575 6.2511 15 1 0.9802 4.3036 7.9851 16 1 2.7862 5.7725 7.3061 17 7 1.5188 2.8374 1.9785 18 1 0.8742 3.4224 1.5506 19 6 3.3840 1.2520 -0.6714 20 6 3.9509 2.6685 -0.7865 21 6 5.3249 2.6151 -1.4573 22 6 5.1871 2.0058 -2.8540 23 6 4.6203 0.5894 -2.7390 24 6 3.2457 0.6431 -2.0681 25 1 -0.3634 0.4425 -0.9275 26 1 -0.3634 -1.0245 0.0807 27 1 -0.3633 0.5821 0.8469 28 1 3.3620 2.7997 6.7352 29 1 4.0574 0.6387 -0.0727 30 1 3.2775 3.2818 -1.3852 31 1 4.0493 3.1023 0.2086 32 1 5.9981 2.0018 -0.8582 33 1 5.7289 3.6240 -1.5389 34 1 6.1659 1.9681 -3.3321 35 1 4.5140 2.6190 -3.4531 36 1 5.2935 -0.0239 -2.1399 37 1 4.5217 0.1555 -3.7341 38 1 2.8419 -0.3660 -1.9863 39 1 2.5723 1.2564 -2.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227838841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:16 Heat of formation + Delta-G solvation = -9.119846 kcal Electronic energy + Delta-G solvation = -20686.956324 eV Core-core repulsion = 17629.461408 eV Total energy + Delta-G solvation = -3057.494916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79033 -38.71268 -36.89636 -33.61450 -32.10074 -31.67238 -30.52927 -29.10981 -26.96506 -25.77562 -24.21908 -22.35212 -21.45658 -20.83645 -19.73810 -19.36133 -17.40949 -16.27022 -15.89159 -15.57860 -15.14083 -14.45174 -14.36137 -13.95831 -13.89196 -13.67193 -13.36405 -13.11745 -12.35517 -11.99167 -11.90902 -11.73024 -11.45554 -11.27483 -11.09985 -11.00227 -10.93326 -10.67247 -10.37203 -10.15262 -9.97917 -9.80997 -9.65166 -9.43034 -9.28004 -8.95386 -8.24746 -7.58168 -6.57997 -4.55060 2.95719 3.09126 3.13346 3.46707 3.90538 4.08997 4.45751 4.59988 4.91400 4.98034 5.01754 5.24917 5.41055 5.43154 5.51125 5.52171 5.59407 5.68178 5.72534 5.73252 5.80121 5.84709 5.87957 5.97064 6.16494 6.19639 6.30612 6.35490 6.41390 6.50250 6.68711 6.79722 6.97352 7.09709 7.28847 7.50089 7.67790 8.24589 8.28898 8.79692 9.07351 10.35241 10.85136 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.005129 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.787395 B = 5458.051196 C = 6069.920075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.205 3.795 4 H 0.053 0.947 5 C 0.035 3.965 6 N -0.272 5.272 7 N -0.339 5.339 8 C 0.337 3.663 9 C -0.457 4.457 10 H 0.081 0.919 11 C 0.080 3.920 12 N -0.738 5.738 13 Si 0.917 3.083 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.273 1.273 17 N -0.636 5.636 18 H 0.399 0.601 19 C -0.069 4.069 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.110 4.110 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.277 0.723 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 0.436 -13.651 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.288 6.288 3 C 0.145 3.855 4 H 0.071 0.929 5 C -0.230 4.230 6 N -0.117 5.117 7 N -0.187 5.187 8 C 0.092 3.908 9 C -0.497 4.497 10 H 0.099 0.901 11 C -0.145 4.145 12 N -0.362 5.362 13 Si 0.742 3.258 14 H -0.187 1.187 15 H -0.198 1.198 16 H -0.198 1.198 17 N -0.256 5.256 18 H 0.234 0.766 19 C -0.088 4.088 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.147 4.147 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.157 -0.944 -12.805 12.840 hybrid contribution -1.888 2.069 -0.044 2.801 sum -2.045 1.125 -12.849 13.059 Atomic orbital electron populations 1.22686 0.82080 1.02285 0.99292 1.87963 1.18730 1.27575 1.94496 1.19874 0.94456 0.83593 0.87570 0.92933 1.23963 1.04827 0.95629 0.98581 1.73990 1.17312 1.22968 0.97396 1.75649 1.21566 1.08212 1.13255 1.21629 0.92080 0.95872 0.81250 1.18178 1.25434 1.12385 0.93728 0.90084 1.25761 0.93905 0.95918 0.98926 1.69969 1.19008 1.26751 1.20490 0.86127 0.79225 0.80360 0.80135 1.18696 1.19838 1.19810 1.43923 1.40031 1.28781 1.12880 0.76638 1.21066 0.94980 0.97317 0.95475 1.21454 0.96061 0.95959 1.01073 1.21491 0.97441 1.00499 0.95943 1.21544 1.00308 0.96577 0.97137 1.21536 0.97196 0.96776 1.00059 1.21531 0.96577 1.01435 0.95204 0.94730 0.90067 0.94264 0.91154 0.89233 0.92748 0.91293 0.91751 0.92330 0.92512 0.92387 0.91850 0.92463 0.91109 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.79 101.05 1.09 1.58 16 2 O -0.37 -6.76 9.46 -35.23 -0.33 -7.10 16 3 C 0.21 3.70 2.24 -27.88 -0.06 3.64 16 4 H 0.05 0.83 7.86 -51.93 -0.41 0.43 16 5 C 0.04 0.81 6.01 -154.50 -0.93 -0.12 16 6 N -0.27 -7.50 12.14 32.88 0.40 -7.10 16 7 N -0.34 -10.20 10.53 31.22 0.33 -9.87 16 8 C 0.34 9.29 7.73 -155.21 -1.20 8.09 16 9 C -0.46 -12.14 9.46 -38.12 -0.36 -12.50 16 10 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 11 C 0.08 2.07 5.50 -17.29 -0.10 1.97 16 12 N -0.74 -20.56 11.95 55.56 0.66 -19.90 16 13 Si 0.92 18.74 29.56 -169.99 -5.03 13.71 16 14 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 N -0.64 -14.60 6.29 -9.37 -0.06 -14.66 16 18 H 0.40 7.57 8.96 -40.82 -0.37 7.20 16 19 C -0.07 -1.13 1.95 -90.62 -0.18 -1.30 16 20 C -0.11 -1.66 5.02 -26.73 -0.13 -1.80 16 21 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 22 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 23 C -0.12 -1.36 5.92 -26.71 -0.16 -1.52 16 24 C -0.11 -1.45 5.01 -26.71 -0.13 -1.58 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.28 6.97 8.29 -40.82 -0.34 6.63 16 29 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.30 7.38 -51.93 -0.38 0.92 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.97 7.56 -51.93 -0.39 0.57 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -32.37 318.18 -7.87 -40.24 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.16 Total: 6.58 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.48 Total: -6.70 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 1.33 Total: -51.52 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.33 Total: -7.10 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.37 -7.87 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.118 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds