Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99931 * 2 1 4 4 H 1.08998 * 109.47202 * 327.73324 * 3 2 1 5 5 C 1.50694 * 109.47305 * 87.73751 * 3 2 1 6 6 N 1.31315 * 126.07975 * 64.97767 * 5 3 2 7 7 N 1.28561 * 110.20708 * 180.02562 * 6 5 3 8 8 C 1.33023 * 109.35847 * 359.97438 * 7 6 5 9 9 C 1.40131 * 126.65964 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00092 * 180.02562 * 9 8 7 11 11 C 1.40236 * 119.99952 * 359.74640 * 9 8 7 12 12 N 1.30693 * 119.99904 * 0.28039 * 11 9 8 13 13 Si 1.86792 * 120.00115 * 180.27284 * 11 9 8 14 14 H 1.48500 * 109.47397 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47204 * 120.00133 * 13 11 9 16 16 H 1.48503 * 109.47670 * 240.00152 * 13 11 9 17 17 N 1.35297 * 126.07705 * 245.24784 * 5 3 2 18 18 H 0.96998 * 127.04884 * 0.02562 * 17 5 3 19 19 C 1.53004 * 109.46764 * 207.73752 * 3 2 1 20 20 C 1.53008 * 109.46930 * 174.86967 * 19 3 2 21 21 C 1.53000 * 109.47146 * 179.97438 * 20 19 3 22 22 C 1.53005 * 109.46714 * 60.00135 * 21 20 19 23 23 C 1.52996 * 109.47434 * 300.00026 * 22 21 20 24 24 C 1.52995 * 109.47319 * 54.87321 * 19 3 2 25 25 H 1.08998 * 109.47267 * 64.49644 * 1 2 3 26 26 H 1.09000 * 109.47278 * 184.50540 * 1 2 3 27 27 H 1.09000 * 109.47047 * 304.50253 * 1 2 3 28 28 H 0.96996 * 120.00088 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.47030 * 294.87144 * 19 3 2 30 30 H 1.08997 * 109.47408 * 299.99945 * 20 19 3 31 31 H 1.09001 * 109.46613 * 60.00061 * 20 19 3 32 32 H 1.09006 * 109.47241 * 300.00431 * 21 20 19 33 33 H 1.08993 * 109.47330 * 180.02562 * 21 20 19 34 34 H 1.08996 * 109.46642 * 179.97438 * 22 21 20 35 35 H 1.08997 * 109.47110 * 60.00223 * 22 21 20 36 36 H 1.09006 * 109.47127 * 300.00075 * 23 22 21 37 37 H 1.09001 * 109.47324 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.47509 * 299.99971 * 24 19 3 39 39 H 1.09006 * 109.47129 * 59.99877 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3641 1.9908 -0.5486 5 6 2.1633 1.7872 1.4196 6 7 2.9422 1.2594 2.3356 7 7 2.8353 1.9111 3.4386 8 6 1.9675 2.9068 3.2802 9 6 1.5800 3.8411 4.2500 10 1 0.8622 4.6094 4.0032 11 6 2.1198 3.7750 5.5426 12 7 2.9884 2.8453 5.8412 13 14 1.5975 5.0158 6.8375 14 1 0.6103 5.9575 6.2511 15 1 0.9802 4.3036 7.9851 16 1 2.7862 5.7725 7.3061 17 7 1.5188 2.8374 1.9785 18 1 0.8742 3.4224 1.5506 19 6 3.3840 1.2520 -0.6714 20 6 3.9509 2.6685 -0.7865 21 6 5.3249 2.6151 -1.4573 22 6 5.1871 2.0058 -2.8540 23 6 4.6203 0.5894 -2.7390 24 6 3.2457 0.6431 -2.0681 25 1 -0.3634 0.4425 -0.9275 26 1 -0.3634 -1.0245 0.0807 27 1 -0.3633 0.5821 0.8469 28 1 3.3620 2.7997 6.7352 29 1 4.0574 0.6387 -0.0727 30 1 3.2775 3.2818 -1.3852 31 1 4.0493 3.1023 0.2086 32 1 5.9981 2.0018 -0.8582 33 1 5.7289 3.6240 -1.5389 34 1 6.1659 1.9681 -3.3321 35 1 4.5140 2.6190 -3.4531 36 1 5.2935 -0.0239 -2.1399 37 1 4.5217 0.1555 -3.7341 38 1 2.8419 -0.3660 -1.9863 39 1 2.5723 1.2564 -2.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227838841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = -30.383864 kcal Electronic energy + Delta-G solvation = -20687.878401 eV Core-core repulsion = 17629.461408 eV Total energy + Delta-G solvation = -3058.416993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.73895 -40.00348 -38.16881 -35.56143 -33.86549 -33.21949 -31.61233 -30.91956 -28.39017 -27.39327 -25.82943 -23.46495 -22.83292 -22.78334 -21.40170 -20.59280 -19.22324 -18.10364 -17.37002 -16.91262 -16.78134 -16.12480 -15.59712 -15.53068 -15.00789 -14.95026 -14.93408 -14.57878 -13.57890 -13.29806 -13.12816 -13.03721 -12.97642 -12.92226 -12.80305 -12.34365 -12.00544 -11.96090 -11.79071 -11.60902 -11.33838 -11.31124 -11.07986 -10.95650 -10.90370 -10.75277 -10.24194 -9.62836 -8.50548 -6.60726 1.27790 1.41721 1.59379 1.69810 2.19163 2.47790 2.60062 2.96226 3.39920 3.74209 3.84331 3.86172 3.97799 4.08109 4.37379 4.41364 4.44164 4.54814 4.55941 4.62081 4.67224 4.69338 4.79475 4.84888 4.98815 5.06791 5.16639 5.25259 5.27657 5.32131 5.32558 5.35657 5.43126 5.54346 5.54998 5.62658 6.22646 6.25352 6.40265 6.80917 7.20448 8.46253 8.83656 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.005129 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.787395 B = 5458.051196 C = 6069.920075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.204 3.796 4 H 0.087 0.913 5 C 0.073 3.927 6 N -0.329 5.329 7 N -0.395 5.395 8 C 0.311 3.689 9 C -0.482 4.482 10 H 0.101 0.899 11 C 0.029 3.971 12 N -0.792 5.792 13 Si 1.005 2.995 14 H -0.247 1.247 15 H -0.269 1.269 16 H -0.268 1.268 17 N -0.625 5.625 18 H 0.418 0.582 19 C -0.066 4.066 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.101 4.101 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.019 0.981 28 H 0.282 0.718 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.022 0.978 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 1.764 -16.093 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.144 3.856 4 H 0.105 0.895 5 C -0.196 4.196 6 N -0.171 5.171 7 N -0.241 5.241 8 C 0.063 3.937 9 C -0.523 4.523 10 H 0.119 0.881 11 C -0.191 4.191 12 N -0.417 5.417 13 Si 0.824 3.176 14 H -0.169 1.169 15 H -0.194 1.194 16 H -0.193 1.193 17 N -0.246 5.246 18 H 0.257 0.743 19 C -0.086 4.086 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.138 4.138 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.678 0.369 -15.273 15.369 hybrid contribution -1.456 1.580 0.578 2.225 sum -3.134 1.949 -14.695 15.151 Atomic orbital electron populations 1.22939 0.80133 1.03591 1.00300 1.87953 1.20928 1.27314 1.94344 1.20208 0.96347 0.84374 0.84672 0.89529 1.24999 1.01291 0.93535 0.99747 1.73889 1.20195 1.24881 0.98181 1.75525 1.23665 1.09959 1.14963 1.21994 0.92555 0.96124 0.83020 1.18711 1.26293 1.12869 0.94386 0.88138 1.26955 0.93189 0.97799 1.01155 1.70124 1.20787 1.29316 1.21467 0.84829 0.79048 0.77301 0.76376 1.16945 1.19359 1.19281 1.43871 1.40000 1.28978 1.11771 0.74338 1.21038 0.93063 0.97461 0.96998 1.21407 0.98082 0.95406 0.99176 1.21496 0.95608 1.01096 0.97162 1.21517 1.01742 0.96148 0.95469 1.21551 0.95850 0.97153 1.00946 1.21472 0.98172 1.01155 0.93032 0.91046 0.88343 0.96225 0.90719 0.93168 0.90348 0.95860 0.93688 0.91296 0.90837 0.90657 0.93206 0.89877 0.91607 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.79 113.37 1.22 1.94 16 2 O -0.39 -13.71 9.46 -148.98 -1.41 -15.11 16 3 C 0.20 7.17 2.24 29.85 0.07 7.23 16 4 H 0.09 2.46 7.86 -2.39 -0.02 2.44 16 5 C 0.07 3.42 6.01 137.81 0.83 4.25 16 6 N -0.33 -19.12 12.14 -49.88 -0.61 -19.73 16 7 N -0.39 -25.07 10.53 -55.13 -0.58 -25.65 16 8 C 0.31 17.73 7.73 133.50 1.03 18.76 16 9 C -0.48 -26.09 9.46 23.22 0.22 -25.87 16 10 H 0.10 4.82 7.85 -2.91 -0.02 4.80 16 11 C 0.03 1.53 5.50 85.35 0.47 2.00 16 12 N -0.79 -45.98 11.95 21.88 0.26 -45.72 16 13 Si 1.01 38.55 29.56 68.60 2.03 40.58 16 14 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 15 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 17 N -0.63 -29.02 6.29 -183.57 -1.15 -30.17 16 18 H 0.42 15.55 8.96 -92.71 -0.83 14.72 16 19 C -0.07 -2.13 1.95 -10.79 -0.02 -2.15 16 20 C -0.10 -3.12 5.02 30.60 0.15 -2.97 16 21 C -0.12 -2.95 5.92 30.60 0.18 -2.77 16 22 C -0.11 -2.13 5.92 30.59 0.18 -1.95 16 23 C -0.12 -2.39 5.92 30.61 0.18 -2.21 16 24 C -0.10 -2.39 5.01 30.61 0.15 -2.24 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 28 H 0.28 14.82 8.29 -92.71 -0.77 14.05 16 29 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.02 0.89 7.38 -2.39 -0.02 0.88 16 32 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.64 7.56 -2.39 -0.02 1.63 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -75.84 318.18 3.42 -72.42 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.21 Total: 29.35 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.67 Total: -5.96 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -2.08 Total: -121.28 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -1.41 Total: -15.11 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -75.84 3.42 -72.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.039 kcal (2) G-P(sol) polarization free energy of solvation -75.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds