Wall clock time and date at job start Mon Mar 30 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99980 * 2 1 4 4 H 1.08997 * 109.47004 * 30.00218 * 3 2 1 5 5 C 1.50703 * 109.46963 * 270.00114 * 3 2 1 6 6 N 1.31306 * 126.07647 * 184.69271 * 5 3 2 7 7 N 1.28572 * 110.20625 * 180.26523 * 6 5 3 8 8 C 1.33023 * 109.35192 * 359.97438 * 7 6 5 9 9 C 1.40124 * 126.65249 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00326 * 174.36289 * 9 8 7 11 11 C 1.40244 * 120.00216 * 354.35569 * 9 8 7 12 12 N 1.30688 * 119.99646 * 6.02552 * 11 9 8 13 13 Si 1.86800 * 120.00358 * 186.02446 * 11 9 8 14 14 H 1.48503 * 109.46909 * 94.98186 * 13 11 9 15 15 H 1.48501 * 109.47048 * 214.98269 * 13 11 9 16 16 H 1.48498 * 109.46784 * 334.98498 * 13 11 9 17 17 N 1.35299 * 126.07642 * 5.00059 * 5 3 2 18 18 H 0.96995 * 127.04735 * 359.75171 * 17 5 3 19 19 C 1.52997 * 109.47139 * 150.00314 * 3 2 1 20 20 C 1.52998 * 109.47407 * 59.99581 * 19 3 2 21 21 C 1.53003 * 109.47120 * 180.02562 * 20 19 3 22 22 C 1.52992 * 109.47090 * 60.00197 * 21 20 19 23 23 C 1.52998 * 109.47297 * 300.00096 * 22 21 20 24 24 C 1.52997 * 109.47417 * 59.99929 * 23 22 21 25 25 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 27 27 H 1.08998 * 109.47524 * 59.99779 * 1 2 3 28 28 H 0.97007 * 120.00038 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.47124 * 180.02562 * 19 3 2 30 30 H 1.08998 * 109.47362 * 300.00325 * 20 19 3 31 31 H 1.09007 * 109.46828 * 60.00559 * 20 19 3 32 32 H 1.09007 * 109.47137 * 300.00089 * 21 20 19 33 33 H 1.08997 * 109.46963 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.46957 * 179.97438 * 22 21 20 35 35 H 1.09007 * 109.47219 * 59.99942 * 22 21 20 36 36 H 1.08998 * 109.47033 * 299.99800 * 23 22 21 37 37 H 1.09004 * 109.47455 * 180.02562 * 23 22 21 38 38 H 1.08997 * 109.47251 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47124 * 59.99927 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4209 6 7 2.8042 2.8755 -1.7973 7 7 2.8063 2.9647 -3.0799 8 6 2.2076 1.8953 -3.5971 9 6 2.0103 1.6230 -4.9574 10 1 1.5903 0.6762 -5.2633 11 6 2.3580 2.5801 -5.9217 12 7 2.9733 3.6757 -5.5627 13 14 1.9416 2.2889 -7.7193 14 1 0.6514 2.9497 -8.0418 15 1 3.0154 2.8558 -8.5742 16 1 1.8270 0.8299 -7.9707 17 7 1.8176 1.1075 -2.5351 18 1 1.3539 0.2567 -2.5779 19 6 3.3589 1.2633 0.7212 20 6 4.2926 0.2893 0.0000 21 6 5.6411 0.2466 0.7216 22 6 5.4332 -0.2196 2.1638 23 6 4.4994 0.7544 2.8851 24 6 3.1509 0.7971 2.1636 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.2136 4.3379 -6.2296 29 1 3.8020 2.2592 0.7216 30 1 3.8493 -0.7065 0.0000 31 1 4.4405 0.6212 -1.0277 32 1 6.0847 1.2424 0.7219 33 1 6.3065 -0.4470 0.2075 34 1 6.3940 -0.2504 2.6778 35 1 4.9896 -1.2153 2.1635 36 1 4.9429 1.7501 2.8855 37 1 4.3516 0.4225 3.9128 38 1 2.4856 1.4906 2.6777 39 1 2.7074 -0.1986 2.1632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227838845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:20 Heat of formation + Delta-G solvation = -9.861753 kcal Electronic energy + Delta-G solvation = -20808.491242 eV Core-core repulsion = 17750.964154 eV Total energy + Delta-G solvation = -3057.527088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80794 -38.76838 -36.92713 -33.59758 -31.97467 -31.66816 -30.49857 -29.09579 -26.93386 -26.03548 -24.20224 -22.35312 -21.43183 -20.72579 -19.74562 -19.23252 -17.46615 -16.39311 -15.79672 -15.55508 -15.05669 -14.58049 -14.27159 -13.98181 -13.80134 -13.67126 -13.29414 -13.14520 -12.73196 -11.93490 -11.79974 -11.65459 -11.38203 -11.29514 -11.13236 -10.97178 -10.84974 -10.78674 -10.36662 -10.19738 -9.90886 -9.76561 -9.70974 -9.38906 -9.35560 -8.91949 -8.27065 -7.50981 -6.56208 -4.51316 2.98756 3.10710 3.14228 3.54280 3.92874 3.99969 4.47770 4.54904 4.92180 4.98141 5.00594 5.34131 5.40523 5.45004 5.46316 5.48821 5.64899 5.69284 5.73408 5.76952 5.79660 5.84295 5.89908 6.01638 6.14898 6.21423 6.39060 6.42061 6.45465 6.51682 6.79325 6.85207 7.00400 7.03786 7.30916 7.48362 7.66638 8.26471 8.30789 8.82682 9.11698 10.37525 10.84074 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.005104 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.195806 B = 5484.173801 C = 5939.708546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.203 3.797 4 H 0.066 0.934 5 C 0.047 3.953 6 N -0.294 5.294 7 N -0.337 5.337 8 C 0.335 3.665 9 C -0.459 4.459 10 H 0.081 0.919 11 C 0.081 3.919 12 N -0.740 5.740 13 Si 0.917 3.083 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.264 1.264 17 N -0.625 5.625 18 H 0.402 0.598 19 C -0.069 4.069 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.112 4.112 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.277 0.723 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -7.574 11.259 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.298 6.298 3 C 0.142 3.858 4 H 0.084 0.916 5 C -0.220 4.220 6 N -0.139 5.139 7 N -0.185 5.185 8 C 0.089 3.911 9 C -0.499 4.499 10 H 0.099 0.901 11 C -0.144 4.144 12 N -0.365 5.365 13 Si 0.741 3.259 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.188 1.188 17 N -0.244 5.244 18 H 0.238 0.762 19 C -0.088 4.088 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.149 4.149 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.241 -6.031 11.353 12.858 hybrid contribution -1.395 -1.570 -1.112 2.376 sum -1.636 -7.601 10.241 12.858 Atomic orbital electron populations 1.22790 0.81712 1.02190 1.00166 1.87880 1.19055 1.28007 1.94822 1.20045 0.94617 0.82947 0.88155 0.91625 1.23980 1.11692 0.96334 0.89959 1.73984 1.15902 1.14886 1.09105 1.75597 1.25820 1.20063 0.96989 1.21603 0.93145 0.86875 0.89510 1.18131 1.41974 1.03088 0.86722 0.90128 1.25746 0.93449 0.94301 1.00892 1.69965 1.25092 1.05961 1.35461 0.86175 0.78829 0.79524 0.81360 1.19593 1.20085 1.18765 1.43773 1.52308 1.21956 1.06322 0.76211 1.21216 0.93454 1.00729 0.93439 1.21396 0.94046 0.99300 0.99324 1.21537 0.97734 1.01187 0.95185 1.21523 0.98827 0.99046 0.96052 1.21509 0.95949 0.99727 0.98279 1.21545 0.96753 1.01730 0.94919 0.89929 0.94132 0.94057 0.91192 0.89287 0.91980 0.91608 0.92091 0.92537 0.92682 0.92277 0.92078 0.92522 0.92531 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.81 101.05 1.09 1.46 16 2 O -0.38 -6.03 8.57 -35.23 -0.30 -6.33 16 3 C 0.20 3.57 2.40 -27.88 -0.07 3.51 16 4 H 0.07 1.11 7.79 -51.93 -0.40 0.70 16 5 C 0.05 1.06 6.03 -154.50 -0.93 0.13 16 6 N -0.29 -7.94 12.19 32.88 0.40 -7.54 16 7 N -0.34 -10.09 10.55 31.22 0.33 -9.76 16 8 C 0.33 9.29 7.72 -155.22 -1.20 8.09 16 9 C -0.46 -12.33 9.46 -38.12 -0.36 -12.69 16 10 H 0.08 1.99 7.86 -52.49 -0.41 1.57 16 11 C 0.08 2.10 5.49 -17.28 -0.09 2.01 16 12 N -0.74 -20.67 11.97 55.56 0.67 -20.00 16 13 Si 0.92 18.91 29.57 -169.99 -5.03 13.88 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 17 N -0.63 -14.61 6.12 -9.38 -0.06 -14.67 16 18 H 0.40 8.20 8.67 -40.82 -0.35 7.85 16 19 C -0.07 -1.11 2.06 -90.62 -0.19 -1.29 16 20 C -0.10 -1.72 4.81 -26.73 -0.13 -1.84 16 21 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 22 C -0.12 -1.37 5.92 -26.74 -0.16 -1.53 16 23 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 24 C -0.11 -1.43 5.06 -26.73 -0.14 -1.57 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.28 6.99 8.29 -40.82 -0.34 6.65 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 31 H 0.07 1.35 7.22 -51.93 -0.37 0.98 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -31.52 316.59 -7.83 -39.35 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.12 Total: 7.35 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.49 Total: -7.05 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 1.34 Total: -51.97 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.30 Total: -6.33 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.52 -7.83 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.490 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds