Wall clock time and date at job start Mon Mar 30 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99980 * 2 1 4 4 H 1.08997 * 109.47004 * 30.00218 * 3 2 1 5 5 C 1.50703 * 109.46963 * 270.00114 * 3 2 1 6 6 N 1.31306 * 126.07647 * 184.69271 * 5 3 2 7 7 N 1.28572 * 110.20625 * 180.26523 * 6 5 3 8 8 C 1.33023 * 109.35192 * 359.97438 * 7 6 5 9 9 C 1.40124 * 126.65249 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00326 * 174.36289 * 9 8 7 11 11 C 1.40244 * 120.00216 * 354.35569 * 9 8 7 12 12 N 1.30688 * 119.99646 * 6.02552 * 11 9 8 13 13 Si 1.86800 * 120.00358 * 186.02446 * 11 9 8 14 14 H 1.48503 * 109.46909 * 94.98186 * 13 11 9 15 15 H 1.48501 * 109.47048 * 214.98269 * 13 11 9 16 16 H 1.48498 * 109.46784 * 334.98498 * 13 11 9 17 17 N 1.35299 * 126.07642 * 5.00059 * 5 3 2 18 18 H 0.96995 * 127.04735 * 359.75171 * 17 5 3 19 19 C 1.52997 * 109.47139 * 150.00314 * 3 2 1 20 20 C 1.52998 * 109.47407 * 59.99581 * 19 3 2 21 21 C 1.53003 * 109.47120 * 180.02562 * 20 19 3 22 22 C 1.52992 * 109.47090 * 60.00197 * 21 20 19 23 23 C 1.52998 * 109.47297 * 300.00096 * 22 21 20 24 24 C 1.52997 * 109.47417 * 59.99929 * 23 22 21 25 25 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 27 27 H 1.08998 * 109.47524 * 59.99779 * 1 2 3 28 28 H 0.97007 * 120.00038 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.47124 * 180.02562 * 19 3 2 30 30 H 1.08998 * 109.47362 * 300.00325 * 20 19 3 31 31 H 1.09007 * 109.46828 * 60.00559 * 20 19 3 32 32 H 1.09007 * 109.47137 * 300.00089 * 21 20 19 33 33 H 1.08997 * 109.46963 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.46957 * 179.97438 * 22 21 20 35 35 H 1.09007 * 109.47219 * 59.99942 * 22 21 20 36 36 H 1.08998 * 109.47033 * 299.99800 * 23 22 21 37 37 H 1.09004 * 109.47455 * 180.02562 * 23 22 21 38 38 H 1.08997 * 109.47251 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47124 * 59.99927 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4209 6 7 2.8042 2.8755 -1.7973 7 7 2.8063 2.9647 -3.0799 8 6 2.2076 1.8953 -3.5971 9 6 2.0103 1.6230 -4.9574 10 1 1.5903 0.6762 -5.2633 11 6 2.3580 2.5801 -5.9217 12 7 2.9733 3.6757 -5.5627 13 14 1.9416 2.2889 -7.7193 14 1 0.6514 2.9497 -8.0418 15 1 3.0154 2.8558 -8.5742 16 1 1.8270 0.8299 -7.9707 17 7 1.8176 1.1075 -2.5351 18 1 1.3539 0.2567 -2.5779 19 6 3.3589 1.2633 0.7212 20 6 4.2926 0.2893 0.0000 21 6 5.6411 0.2466 0.7216 22 6 5.4332 -0.2196 2.1638 23 6 4.4994 0.7544 2.8851 24 6 3.1509 0.7971 2.1636 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.2136 4.3379 -6.2296 29 1 3.8020 2.2592 0.7216 30 1 3.8493 -0.7065 0.0000 31 1 4.4405 0.6212 -1.0277 32 1 6.0847 1.2424 0.7219 33 1 6.3065 -0.4470 0.2075 34 1 6.3940 -0.2504 2.6778 35 1 4.9896 -1.2153 2.1635 36 1 4.9429 1.7501 2.8855 37 1 4.3516 0.4225 3.9128 38 1 2.4856 1.4906 2.6777 39 1 2.7074 -0.1986 2.1632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227838845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:20 Heat of formation + Delta-G solvation = -29.959838 kcal Electronic energy + Delta-G solvation = -20809.362761 eV Core-core repulsion = 17750.964154 eV Total energy + Delta-G solvation = -3058.398606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.75443 -40.07044 -38.12286 -35.56136 -33.67638 -33.28690 -31.62488 -30.91323 -28.33950 -27.54435 -25.81204 -23.51737 -22.78498 -22.73224 -21.40305 -20.49448 -19.27346 -18.14714 -17.29715 -16.91718 -16.62117 -16.10253 -15.68107 -15.53677 -15.03553 -14.95209 -14.83336 -14.45006 -14.01936 -13.30083 -13.10327 -13.02606 -12.92040 -12.83274 -12.69963 -12.38751 -11.99115 -11.95755 -11.90689 -11.64670 -11.33261 -11.27168 -11.08493 -10.95541 -10.86845 -10.80466 -10.26668 -9.54670 -8.50612 -6.58754 1.30194 1.41417 1.58149 1.73485 2.20130 2.51971 2.61794 2.79348 3.38418 3.70090 3.79977 3.86553 4.06007 4.17725 4.34448 4.45743 4.51287 4.53040 4.57767 4.64083 4.69277 4.73797 4.80496 4.84584 4.99297 5.05563 5.19614 5.22742 5.32050 5.33063 5.35308 5.35788 5.42464 5.50578 5.58285 5.66367 6.14794 6.25466 6.38717 6.81690 7.19953 8.46521 8.81462 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.005104 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.195806 B = 5484.173801 C = 5939.708546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.382 6.382 3 C 0.204 3.796 4 H 0.081 0.919 5 C 0.082 3.918 6 N -0.342 5.342 7 N -0.390 5.390 8 C 0.308 3.692 9 C -0.486 4.486 10 H 0.097 0.903 11 C 0.031 3.969 12 N -0.791 5.791 13 Si 1.004 2.996 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.250 1.250 17 N -0.617 5.617 18 H 0.416 0.584 19 C -0.066 4.066 20 C -0.096 4.096 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.103 4.103 25 H 0.111 0.889 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.283 0.717 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 -9.541 12.559 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.299 6.299 3 C 0.144 3.856 4 H 0.099 0.901 5 C -0.187 4.187 6 N -0.184 5.184 7 N -0.236 5.236 8 C 0.060 3.940 9 C -0.527 4.527 10 H 0.115 0.885 11 C -0.189 4.189 12 N -0.417 5.417 13 Si 0.823 3.177 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.173 1.173 17 N -0.236 5.236 18 H 0.254 0.746 19 C -0.085 4.085 20 C -0.134 4.134 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.153 4.153 24 C -0.140 4.140 25 H 0.130 0.870 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.226 -8.007 12.683 15.049 hybrid contribution -1.134 -1.030 -1.386 2.066 sum -2.359 -9.037 11.296 14.657 Atomic orbital electron populations 1.23056 0.79832 1.04255 1.00409 1.87889 1.21035 1.26407 1.94577 1.20206 0.96283 0.84272 0.84876 0.90103 1.25035 1.07305 0.94447 0.91951 1.73869 1.18712 1.17411 1.08436 1.75480 1.27822 1.21978 0.98347 1.21977 0.93878 0.87395 0.90798 1.18643 1.42796 1.04294 0.86923 0.88534 1.26916 0.92407 0.93407 1.06175 1.70109 1.26562 1.07357 1.37632 0.84881 0.78645 0.80028 0.74102 1.18779 1.19493 1.17341 1.43746 1.51940 1.22218 1.05715 0.74580 1.21174 0.92010 0.99612 0.95750 1.21290 0.96028 0.99191 0.96859 1.21528 0.96002 1.00942 0.97065 1.21501 1.00114 0.99312 0.93965 1.21530 0.94780 0.99641 0.99382 1.21494 0.98157 1.02160 0.92200 0.87035 0.91951 0.95713 0.90696 0.91362 0.91751 0.96745 0.93115 0.92242 0.90789 0.91527 0.92395 0.89852 0.91063 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.81 113.37 1.23 1.70 16 2 O -0.38 -11.33 8.57 -148.98 -1.28 -12.61 16 3 C 0.20 7.06 2.40 29.85 0.07 7.13 16 4 H 0.08 2.60 7.79 -2.39 -0.02 2.58 16 5 C 0.08 3.83 6.03 137.81 0.83 4.66 16 6 N -0.34 -19.36 12.19 -49.88 -0.61 -19.97 16 7 N -0.39 -24.59 10.55 -55.14 -0.58 -25.17 16 8 C 0.31 17.76 7.72 133.51 1.03 18.79 16 9 C -0.49 -26.77 9.46 23.22 0.22 -26.55 16 10 H 0.10 4.78 7.86 -2.91 -0.02 4.76 16 11 C 0.03 1.65 5.49 85.35 0.47 2.12 16 12 N -0.79 -45.90 11.97 21.88 0.26 -45.64 16 13 Si 1.00 38.96 29.57 68.60 2.03 40.99 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 15 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 17 N -0.62 -29.53 6.12 -183.58 -1.12 -30.65 16 18 H 0.42 17.05 8.67 -92.71 -0.80 16.25 16 19 C -0.07 -2.08 2.06 -10.79 -0.02 -2.10 16 20 C -0.10 -3.22 4.81 30.59 0.15 -3.08 16 21 C -0.12 -3.24 5.92 30.59 0.18 -3.06 16 22 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 23 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16 24 C -0.10 -2.34 5.06 30.60 0.15 -2.18 16 25 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.28 14.81 8.29 -92.70 -0.77 14.04 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 31 H 0.01 0.60 7.22 -2.38 -0.02 0.58 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.63 7.68 -2.39 -0.02 1.61 16 Total: -1.00 -72.87 316.59 3.61 -69.26 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.24 Total: 30.59 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.67 Total: -6.80 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -2.05 Total: -121.43 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.28 Total: -12.61 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -72.87 3.61 -69.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.299 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds