Wall clock time and date at job start Mon Mar 30 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.46757 * 2 1 4 4 C 1.42911 * 113.99977 * 184.26648 * 3 2 1 5 5 C 1.50707 * 109.46681 * 304.77863 * 4 3 2 6 6 N 1.31316 * 126.07312 * 124.67860 * 5 4 3 7 7 N 1.28559 * 110.20224 * 179.75522 * 6 5 4 8 8 C 1.33032 * 109.35714 * 0.39727 * 7 6 5 9 9 C 1.40127 * 126.65798 * 179.88300 * 8 7 6 10 10 H 1.07997 * 120.00283 * 185.41092 * 9 8 7 11 11 C 1.40240 * 119.99695 * 5.41073 * 9 8 7 12 12 N 1.30686 * 120.00674 * 5.91031 * 11 9 8 13 13 Si 1.86800 * 119.99745 * 185.91022 * 11 9 8 14 14 H 1.48506 * 109.47292 * 265.00961 * 13 11 9 15 15 H 1.48504 * 109.47206 * 25.00529 * 13 11 9 16 16 H 1.48497 * 109.47567 * 145.00896 * 13 11 9 17 17 N 1.35290 * 126.07573 * 304.67724 * 5 4 3 18 18 H 0.96995 * 127.05416 * 0.02562 * 17 5 4 19 19 C 1.53003 * 109.46802 * 64.77499 * 4 3 2 20 20 C 1.52996 * 109.47041 * 60.00336 * 19 4 3 21 21 C 1.53002 * 109.46943 * 59.99732 * 20 19 4 22 22 C 1.52997 * 109.47305 * 299.99740 * 21 20 19 23 23 C 1.52995 * 109.47289 * 184.77641 * 4 3 2 24 24 H 1.08998 * 109.47214 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47588 * 299.99825 * 1 2 3 26 26 H 1.09008 * 109.47362 * 59.99909 * 1 2 3 27 27 H 1.09006 * 109.47096 * 240.00713 * 2 1 3 28 28 H 1.08995 * 109.47208 * 120.00172 * 2 1 3 29 29 H 0.96996 * 120.00055 * 180.02562 * 12 11 9 30 30 H 1.08996 * 109.46632 * 180.02562 * 19 4 3 31 31 H 1.09000 * 109.47170 * 300.00591 * 19 4 3 32 32 H 1.09004 * 109.47240 * 299.99778 * 20 19 4 33 33 H 1.08996 * 109.47413 * 179.97438 * 20 19 4 34 34 H 1.09004 * 109.47065 * 180.02562 * 21 20 19 35 35 H 1.08998 * 109.47323 * 60.00644 * 21 20 19 36 36 H 1.09004 * 109.47222 * 300.00164 * 22 21 20 37 37 H 1.08999 * 109.47460 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.46767 * 60.00126 * 23 4 3 39 39 H 1.08996 * 109.47102 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4274 1.4615 -0.0971 5 6 4.0719 0.6650 1.0081 6 7 4.9693 -0.2818 0.8568 7 7 5.3142 -0.7536 2.0019 8 6 4.6362 -0.1266 2.9595 9 6 4.7290 -0.3573 4.3385 10 1 4.0634 0.1545 5.0177 11 6 5.6865 -1.2527 4.8367 12 7 6.5669 -1.7838 4.0300 13 14 5.7034 -1.6865 6.6536 14 1 6.6706 -0.8106 7.3627 15 1 4.3462 -1.4876 7.2227 16 1 6.1068 -3.1059 6.8200 17 7 3.8289 0.7983 2.3323 18 1 3.2127 1.4174 2.7539 19 6 3.8909 0.9219 -1.4518 20 6 3.2365 1.7305 -2.5737 21 6 3.6402 3.2007 -2.4450 22 6 3.1766 3.7402 -1.0905 23 6 3.8310 2.9316 0.0315 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 7.2288 -2.4034 4.3746 30 1 4.9749 1.0085 -1.5256 31 1 3.6033 -0.1255 -1.5434 32 1 2.1525 1.6435 -2.4996 33 1 3.5670 1.3464 -3.5388 34 1 3.1736 3.7768 -3.2441 35 1 4.7241 3.2877 -2.5192 36 1 2.0926 3.6532 -1.0164 37 1 3.4637 4.7877 -0.9990 38 1 3.5007 3.3159 0.9966 39 1 4.9150 3.0186 -0.0421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227838848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:34 Heat of formation + Delta-G solvation = -6.175767 kcal Electronic energy + Delta-G solvation = -21110.664412 eV Core-core repulsion = 18053.297161 eV Total energy + Delta-G solvation = -3057.367251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95356 -38.97726 -35.85024 -33.61790 -31.99502 -31.39167 -30.51967 -29.92334 -28.20471 -25.41391 -23.05631 -22.43138 -21.97957 -20.61765 -19.99332 -19.15567 -17.54489 -16.20089 -15.85213 -15.33047 -15.20021 -14.61743 -14.49814 -13.89910 -13.51638 -13.22981 -13.20013 -12.74550 -12.50875 -12.00198 -11.88605 -11.69743 -11.55745 -11.33563 -11.26532 -11.04649 -10.93753 -10.75650 -10.41507 -10.33121 -10.08153 -9.92956 -9.61117 -9.40996 -9.08283 -8.95654 -8.30361 -7.60745 -6.60694 -4.55595 2.96127 3.09139 3.12883 3.46470 3.90801 4.03082 4.44942 4.51406 4.97732 5.02662 5.08635 5.32914 5.40225 5.47063 5.49950 5.50950 5.64543 5.68552 5.74362 5.81019 5.87652 5.92705 5.99374 6.18946 6.21841 6.25772 6.30565 6.35410 6.43028 6.46114 6.67404 6.71497 6.96245 7.09540 7.30484 7.53461 7.70458 8.22414 8.27116 8.78854 9.07299 10.33565 10.79081 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.005425 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.197229 B = 5160.419373 C = 5488.848404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 O -0.378 6.378 4 C 0.228 3.772 5 C 0.037 3.963 6 N -0.287 5.287 7 N -0.340 5.340 8 C 0.338 3.662 9 C -0.458 4.458 10 H 0.081 0.919 11 C 0.082 3.918 12 N -0.741 5.741 13 Si 0.917 3.083 14 H -0.271 1.271 15 H -0.263 1.263 16 H -0.275 1.275 17 N -0.627 5.627 18 H 0.402 0.598 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.098 4.098 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.278 0.722 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 7.072 -7.116 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.297 6.297 4 C 0.187 3.813 5 C -0.229 4.229 6 N -0.132 5.132 7 N -0.188 5.188 8 C 0.093 3.907 9 C -0.498 4.498 10 H 0.099 0.901 11 C -0.143 4.143 12 N -0.365 5.365 13 Si 0.741 3.259 14 H -0.196 1.196 15 H -0.187 1.187 16 H -0.200 1.200 17 N -0.245 5.245 18 H 0.238 0.762 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.136 4.136 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.894 6.012 -7.956 12.123 hybrid contribution -0.947 0.684 1.879 2.213 sum -7.841 6.696 -6.077 11.969 Atomic orbital electron populations 1.21719 0.94489 1.01742 1.02354 1.22343 0.94137 0.84420 1.00885 1.87836 1.20915 1.26352 1.94563 1.19266 0.79146 0.92984 0.89930 1.23990 1.07546 1.06608 0.84758 1.73998 1.09873 1.07212 1.22088 1.75579 1.25414 1.25564 0.92213 1.21616 0.87413 0.86181 0.95520 1.18143 1.18316 1.25465 0.87914 0.90061 1.25748 0.94014 0.94634 0.99923 1.69936 1.10516 1.20022 1.36021 0.86172 0.79470 0.78452 0.81795 1.19580 1.18687 1.19996 1.43788 1.39286 1.34888 1.06530 0.76234 1.21812 1.01637 0.99749 0.92940 1.21487 1.00931 0.94943 0.97889 1.21532 1.00861 0.96162 0.96989 1.21467 1.01174 0.98218 0.94252 1.21505 1.00744 0.92408 0.98985 0.91593 0.92282 0.92347 0.93312 0.93078 0.91101 0.90360 0.91260 0.91707 0.92332 0.92459 0.92165 0.91226 0.92423 0.91868 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.15 0.38 -1.51 16 2 C 0.06 0.97 5.99 37.15 0.22 1.20 16 3 O -0.38 -6.43 8.63 -35.23 -0.30 -6.73 16 4 C 0.23 4.08 0.68 -91.77 -0.06 4.02 16 5 C 0.04 0.83 5.21 -154.50 -0.80 0.03 16 6 N -0.29 -7.66 11.53 32.88 0.38 -7.29 16 7 N -0.34 -10.08 10.59 31.22 0.33 -9.75 16 8 C 0.34 9.31 7.71 -155.20 -1.20 8.11 16 9 C -0.46 -12.20 9.46 -38.12 -0.36 -12.56 16 10 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 11 C 0.08 2.11 5.49 -17.29 -0.09 2.02 16 12 N -0.74 -20.51 12.00 55.56 0.67 -19.85 16 13 Si 0.92 18.76 29.57 -169.99 -5.03 13.74 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 N -0.63 -14.60 6.29 -9.37 -0.06 -14.65 16 18 H 0.40 8.16 8.96 -40.82 -0.37 7.80 16 19 C -0.12 -2.05 3.99 -26.73 -0.11 -2.15 16 20 C -0.11 -1.51 5.78 -26.73 -0.15 -1.67 16 21 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.11 -1.45 5.78 -26.73 -0.15 -1.60 16 23 C -0.10 -1.55 4.93 -26.74 -0.13 -1.68 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.05 0.80 6.35 -51.93 -0.33 0.47 16 28 H 0.05 1.01 7.19 -51.93 -0.37 0.64 16 29 H 0.28 6.96 8.29 -40.82 -0.34 6.62 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.23 6.55 -51.93 -0.34 0.89 16 32 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -31.09 313.13 -7.89 -38.99 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.98 Total: 8.20 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.62 Total: -7.37 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 1.32 Total: -51.54 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.30 Total: -6.73 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.09 -7.89 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.810 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds