Wall clock time and date at job start Mon Mar 30 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.46757 * 2 1 4 4 C 1.42911 * 113.99977 * 184.26648 * 3 2 1 5 5 C 1.50707 * 109.46681 * 304.77863 * 4 3 2 6 6 N 1.31316 * 126.07312 * 124.67860 * 5 4 3 7 7 N 1.28559 * 110.20224 * 179.75522 * 6 5 4 8 8 C 1.33032 * 109.35714 * 0.39727 * 7 6 5 9 9 C 1.40127 * 126.65798 * 179.88300 * 8 7 6 10 10 H 1.07997 * 120.00283 * 185.41092 * 9 8 7 11 11 C 1.40240 * 119.99695 * 5.41073 * 9 8 7 12 12 N 1.30686 * 120.00674 * 5.91031 * 11 9 8 13 13 Si 1.86800 * 119.99745 * 185.91022 * 11 9 8 14 14 H 1.48506 * 109.47292 * 265.00961 * 13 11 9 15 15 H 1.48504 * 109.47206 * 25.00529 * 13 11 9 16 16 H 1.48497 * 109.47567 * 145.00896 * 13 11 9 17 17 N 1.35290 * 126.07573 * 304.67724 * 5 4 3 18 18 H 0.96995 * 127.05416 * 0.02562 * 17 5 4 19 19 C 1.53003 * 109.46802 * 64.77499 * 4 3 2 20 20 C 1.52996 * 109.47041 * 60.00336 * 19 4 3 21 21 C 1.53002 * 109.46943 * 59.99732 * 20 19 4 22 22 C 1.52997 * 109.47305 * 299.99740 * 21 20 19 23 23 C 1.52995 * 109.47289 * 184.77641 * 4 3 2 24 24 H 1.08998 * 109.47214 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47588 * 299.99825 * 1 2 3 26 26 H 1.09008 * 109.47362 * 59.99909 * 1 2 3 27 27 H 1.09006 * 109.47096 * 240.00713 * 2 1 3 28 28 H 1.08995 * 109.47208 * 120.00172 * 2 1 3 29 29 H 0.96996 * 120.00055 * 180.02562 * 12 11 9 30 30 H 1.08996 * 109.46632 * 180.02562 * 19 4 3 31 31 H 1.09000 * 109.47170 * 300.00591 * 19 4 3 32 32 H 1.09004 * 109.47240 * 299.99778 * 20 19 4 33 33 H 1.08996 * 109.47413 * 179.97438 * 20 19 4 34 34 H 1.09004 * 109.47065 * 180.02562 * 21 20 19 35 35 H 1.08998 * 109.47323 * 60.00644 * 21 20 19 36 36 H 1.09004 * 109.47222 * 300.00164 * 22 21 20 37 37 H 1.08999 * 109.47460 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.46767 * 60.00126 * 23 4 3 39 39 H 1.08996 * 109.47102 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4274 1.4615 -0.0971 5 6 4.0719 0.6650 1.0081 6 7 4.9693 -0.2818 0.8568 7 7 5.3142 -0.7536 2.0019 8 6 4.6362 -0.1266 2.9595 9 6 4.7290 -0.3573 4.3385 10 1 4.0634 0.1545 5.0177 11 6 5.6865 -1.2527 4.8367 12 7 6.5669 -1.7838 4.0300 13 14 5.7034 -1.6865 6.6536 14 1 6.6706 -0.8106 7.3627 15 1 4.3462 -1.4876 7.2227 16 1 6.1068 -3.1059 6.8200 17 7 3.8289 0.7983 2.3323 18 1 3.2127 1.4174 2.7539 19 6 3.8909 0.9219 -1.4518 20 6 3.2365 1.7305 -2.5737 21 6 3.6402 3.2007 -2.4450 22 6 3.1766 3.7402 -1.0905 23 6 3.8310 2.9316 0.0315 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 7.2288 -2.4034 4.3746 30 1 4.9749 1.0085 -1.5256 31 1 3.6033 -0.1255 -1.5434 32 1 2.1525 1.6435 -2.4996 33 1 3.5670 1.3464 -3.5388 34 1 3.1736 3.7768 -3.2441 35 1 4.7241 3.2877 -2.5192 36 1 2.0926 3.6532 -1.0164 37 1 3.4637 4.7877 -0.9990 38 1 3.5007 3.3159 0.9966 39 1 4.9150 3.0186 -0.0421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227838848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:34 Heat of formation + Delta-G solvation = -25.973556 kcal Electronic energy + Delta-G solvation = -21111.522909 eV Core-core repulsion = 18053.297161 eV Total energy + Delta-G solvation = -3058.225748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.87126 -40.41518 -37.08908 -35.57680 -33.87443 -32.83055 -31.80664 -31.38709 -29.87589 -27.31344 -24.31840 -23.94760 -23.27638 -22.54351 -21.58821 -20.57186 -19.33234 -18.08069 -17.27590 -16.96742 -16.57348 -16.25225 -16.05728 -15.32753 -15.04334 -14.82100 -14.50540 -13.91554 -13.72016 -13.33643 -13.18321 -13.14161 -12.96672 -12.91627 -12.84182 -12.61007 -12.19734 -12.03014 -11.97113 -11.65612 -11.42262 -11.32510 -11.25254 -11.17990 -10.95333 -10.48960 -10.29960 -9.64942 -8.53931 -6.61893 1.27152 1.41047 1.57692 1.68135 2.18643 2.42662 2.57239 2.80055 3.36635 3.64147 3.81202 3.83980 4.08360 4.21226 4.26899 4.28783 4.38882 4.46164 4.55067 4.60588 4.68437 4.74425 4.90508 4.96726 4.98776 5.09200 5.15081 5.17226 5.21946 5.27961 5.30094 5.32221 5.37113 5.43002 5.55784 5.60347 6.19009 6.23727 6.35016 6.79093 7.15886 8.43685 8.77024 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.005425 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.197229 B = 5160.419373 C = 5488.848404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 O -0.368 6.368 4 C 0.226 3.774 5 C 0.071 3.929 6 N -0.332 5.332 7 N -0.393 5.393 8 C 0.313 3.687 9 C -0.485 4.485 10 H 0.098 0.902 11 C 0.033 3.967 12 N -0.791 5.791 13 Si 1.004 2.996 14 H -0.260 1.260 15 H -0.251 1.251 16 H -0.271 1.271 17 N -0.620 5.620 18 H 0.416 0.584 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.098 4.098 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.011 0.989 29 H 0.284 0.716 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 8.756 -7.315 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.184 3.816 5 C -0.198 4.198 6 N -0.174 5.174 7 N -0.239 5.239 8 C 0.065 3.935 9 C -0.525 4.525 10 H 0.116 0.884 11 C -0.188 4.188 12 N -0.416 5.416 13 Si 0.823 3.177 14 H -0.185 1.185 15 H -0.174 1.174 16 H -0.196 1.196 17 N -0.238 5.238 18 H 0.254 0.746 19 C -0.159 4.159 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.727 7.708 -8.179 14.230 hybrid contribution -0.438 0.208 1.833 1.896 sum -9.165 7.916 -6.347 13.673 Atomic orbital electron populations 1.21692 0.91152 1.03128 1.03393 1.22420 0.96776 0.83785 0.98931 1.87857 1.19843 1.26552 1.94357 1.19573 0.79479 0.93856 0.88712 1.25020 1.04851 1.04318 0.85625 1.73900 1.12438 1.09452 1.21654 1.75464 1.27488 1.27572 0.93382 1.21982 0.88266 0.87138 0.96102 1.18656 1.19335 1.26551 0.87964 0.88430 1.26912 0.92804 0.93687 1.05385 1.70074 1.11621 1.21004 1.38921 0.84886 0.80058 0.78184 0.74578 1.18492 1.17442 1.19553 1.43779 1.38931 1.34456 1.06680 0.74623 1.21783 1.00906 0.99470 0.93706 1.21465 1.00744 0.95381 0.96874 1.21558 1.01162 0.95293 0.97386 1.21445 1.00885 0.98817 0.93145 1.21532 1.00454 0.91061 1.00628 0.90118 0.92141 0.90316 0.93308 0.97104 0.90590 0.92052 0.93131 0.91234 0.90618 0.89573 0.92204 0.90965 0.90129 0.92059 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 10.28 71.98 0.74 -2.52 16 2 C 0.06 1.89 5.99 71.98 0.43 2.32 16 3 O -0.37 -12.08 8.63 -148.98 -1.29 -13.37 16 4 C 0.23 8.02 0.68 -11.54 -0.01 8.01 16 5 C 0.07 3.31 5.21 137.81 0.72 4.02 16 6 N -0.33 -18.65 11.53 -49.87 -0.57 -19.23 16 7 N -0.39 -24.52 10.59 -55.13 -0.58 -25.10 16 8 C 0.31 17.89 7.71 133.50 1.03 18.92 16 9 C -0.48 -26.43 9.46 23.22 0.22 -26.21 16 10 H 0.10 4.78 7.86 -2.91 -0.02 4.76 16 11 C 0.03 1.71 5.49 85.35 0.47 2.18 16 12 N -0.79 -45.46 12.00 21.88 0.26 -45.20 16 13 Si 1.00 38.61 29.57 68.60 2.03 40.64 16 14 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 15 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 17 N -0.62 -29.66 6.29 -183.56 -1.15 -30.81 16 18 H 0.42 17.07 8.96 -92.71 -0.83 16.24 16 19 C -0.12 -3.98 3.99 30.59 0.12 -3.86 16 20 C -0.11 -2.56 5.78 30.59 0.18 -2.38 16 21 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 22 C -0.11 -2.35 5.78 30.59 0.18 -2.18 16 23 C -0.10 -2.98 4.93 30.59 0.15 -2.83 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.05 1.59 6.35 -2.38 -0.02 1.58 16 28 H 0.01 0.43 7.19 -2.39 -0.02 0.42 16 29 H 0.28 14.72 8.29 -92.71 -0.77 13.96 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.83 6.55 -2.39 -0.02 1.82 16 32 H 0.07 1.62 7.68 -2.38 -0.02 1.60 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.62 7.68 -2.38 -0.02 1.60 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.37 313.13 3.32 -68.05 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.22 Total: 31.75 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.41 Total: -6.74 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -2.05 Total: -120.33 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.29 Total: -13.37 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -71.37 3.32 -68.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.081 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds