Wall clock time and date at job start Mon Mar 30 2020 08:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.05448 * 2 1 4 4 C 1.54369 * 110.04501 * 238.52710 * 2 1 3 5 5 C 1.54897 * 104.19354 * 217.08884 * 4 2 1 6 6 C 1.54887 * 102.74639 * 37.97160 * 5 4 2 7 7 C 1.53871 * 110.03050 * 121.41494 * 2 1 3 8 8 H 1.08997 * 110.03351 * 238.61989 * 7 2 1 9 9 C 1.50705 * 110.03390 * 0.02562 * 7 2 1 10 10 O 1.21277 * 119.99668 * 91.71270 * 9 7 2 11 11 N 1.34778 * 119.99873 * 271.71180 * 9 7 2 12 12 C 1.46493 * 119.99596 * 174.62717 * 11 9 7 13 13 C 1.50705 * 109.47227 * 89.99947 * 12 11 9 14 14 H 1.08000 * 119.99704 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00165 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99606 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47602 * 90.00358 * 17 15 13 19 19 H 1.48510 * 109.47006 * 210.00124 * 17 15 13 20 20 H 1.48501 * 109.47258 * 329.99536 * 17 15 13 21 21 C 1.46502 * 120.00048 * 354.62767 * 11 9 7 22 22 C 1.52998 * 117.49665 * 193.45340 * 21 11 9 23 23 C 1.52999 * 117.49915 * 124.82963 * 21 11 9 24 24 H 1.08996 * 109.47323 * 293.89570 * 1 2 3 25 25 H 1.09002 * 109.46867 * 53.89393 * 1 2 3 26 26 H 1.08998 * 109.47366 * 173.89346 * 1 2 3 27 27 H 1.08994 * 109.46677 * 181.41616 * 3 2 1 28 28 H 1.09001 * 109.47187 * 301.41854 * 3 2 1 29 29 H 1.08998 * 109.46908 * 61.41483 * 3 2 1 30 30 H 1.08996 * 110.46198 * 98.42790 * 4 2 1 31 31 H 1.09002 * 110.62625 * 335.83588 * 4 2 1 32 32 H 1.09000 * 110.75505 * 279.65242 * 5 4 2 33 33 H 1.08999 * 110.91009 * 156.35567 * 5 4 2 34 34 H 1.08997 * 110.48553 * 203.37494 * 6 5 4 35 35 H 1.09003 * 110.48825 * 80.73822 * 6 5 4 36 36 H 1.08998 * 109.47494 * 330.00002 * 12 11 9 37 37 H 1.09003 * 109.47006 * 209.99709 * 12 11 9 38 38 H 0.96994 * 120.00176 * 359.97438 * 16 15 13 39 39 H 1.08997 * 115.54822 * 339.15901 * 21 11 9 40 40 H 1.09005 * 117.49789 * 359.97438 * 22 21 11 41 41 H 1.09002 * 117.50092 * 145.01851 * 22 21 11 42 42 H 1.08989 * 117.50084 * 214.98012 * 23 21 11 43 43 H 1.09002 * 117.49683 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0591 -0.7571 -1.2368 5 6 3.3146 -1.5014 -0.7182 6 6 2.8882 -1.9405 0.7046 7 6 2.0571 -0.7535 1.2337 8 1 2.6859 -0.0951 1.8329 9 6 0.9037 -1.2597 2.0612 10 8 0.4603 -2.3717 1.8673 11 7 0.3650 -0.4765 3.0167 12 6 -0.8289 -0.9202 3.7404 13 6 -0.4151 -1.6964 4.9641 14 1 0.6325 -1.8440 5.1812 15 6 -1.3740 -2.2172 5.8070 16 7 -2.6497 -2.0369 5.5428 17 14 -0.8610 -3.1786 7.3242 18 1 -0.7124 -2.2490 8.4726 19 1 -1.8974 -4.1942 7.6404 20 1 0.4343 -3.8572 7.0656 21 6 0.9735 0.8185 3.3316 22 6 0.5242 1.5162 4.6169 23 6 0.0779 2.0567 3.2569 24 1 -0.3634 0.4163 0.9395 25 1 -0.3633 0.6056 -0.8303 26 1 -0.3634 -1.0218 -0.1093 27 1 3.1443 1.4262 -0.0254 28 1 1.6761 1.9623 -0.8770 29 1 1.7174 1.9471 0.9024 30 1 2.3303 -0.0557 -2.0258 31 1 1.3164 -1.4682 -1.5986 32 1 4.1716 -0.8293 -0.6744 33 1 3.5372 -2.3688 -1.3397 34 1 3.7643 -2.1028 1.3324 35 1 2.2783 -2.8429 0.6587 36 1 -1.4308 -1.5573 3.0924 37 1 -1.4147 -0.0518 4.0419 38 1 -2.9160 -1.5374 4.7552 39 1 2.0160 0.9327 3.0345 40 1 -0.2245 1.0120 5.2281 41 1 1.2712 2.0896 5.1659 42 1 0.5312 2.9856 2.9111 43 1 -0.9639 1.9079 2.9730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228853415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:41 Heat of formation + Delta-G solvation = -28.021077 kcal Electronic energy + Delta-G solvation = -21880.036316 eV Core-core repulsion = 18925.262124 eV Total energy + Delta-G solvation = -2954.774192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36416 -37.83316 -36.56197 -33.46552 -32.28728 -31.80513 -29.40462 -27.26445 -26.67746 -24.55094 -23.01028 -22.15884 -21.76833 -20.63404 -19.46752 -17.72389 -16.90445 -16.74278 -15.47603 -15.37557 -14.80087 -14.26510 -13.88996 -13.71653 -13.67228 -13.34739 -13.05350 -12.75054 -12.40358 -11.94537 -11.80624 -11.57923 -11.48949 -11.21076 -10.98867 -10.95585 -10.88497 -10.63687 -10.58997 -10.51491 -10.46720 -10.42744 -10.22493 -10.10194 -10.04272 -8.98153 -8.83227 -8.36510 -7.46782 -6.35752 -4.07336 3.32503 3.43127 3.49344 3.64196 3.78298 4.32992 4.55043 4.56672 4.69552 4.77011 5.10889 5.19146 5.26829 5.34430 5.36927 5.38424 5.45299 5.46017 5.52235 5.63549 5.73012 5.75701 5.91312 5.92964 5.98685 5.99760 6.03983 6.10498 6.17074 6.23875 6.35092 6.37341 6.44943 6.56371 6.56838 6.69913 6.84625 7.13332 7.44199 8.06345 8.34747 8.48147 8.80525 9.07588 9.61527 11.00911 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.006462 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.748593 B = 4332.140556 C = 4860.705701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.049 4.049 3 C -0.139 4.139 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.108 4.108 8 H 0.086 0.914 9 C 0.524 3.476 10 O -0.538 6.538 11 N -0.567 5.567 12 C 0.236 3.764 13 C -0.598 4.598 14 H 0.051 0.949 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 1.073 2.927 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.289 1.289 21 C 0.079 3.921 22 C -0.178 4.178 23 C -0.202 4.202 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.022 0.978 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.829 8.760 -10.542 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.049 4.049 3 C -0.196 4.196 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.129 4.129 8 H 0.104 0.896 9 C 0.311 3.689 10 O -0.415 6.415 11 N -0.296 5.296 12 C 0.117 3.883 13 C -0.636 4.636 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.548 5.548 17 Si 0.901 3.099 18 H -0.215 1.215 19 H -0.209 1.209 20 H -0.216 1.216 21 C -0.027 4.027 22 C -0.215 4.215 23 C -0.241 4.241 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.971 7.312 -9.318 15.483 hybrid contribution 0.617 0.991 -1.153 1.641 sum 10.588 8.303 -10.471 17.050 Atomic orbital electron populations 1.22124 0.94162 1.02524 1.02281 1.20976 0.95818 0.94794 0.93326 1.21947 1.00531 0.95088 1.02044 1.22504 0.97416 0.98709 0.96477 1.22453 0.97390 0.99625 0.96401 1.22365 0.98979 0.98462 0.95463 1.22142 0.96148 0.98299 0.96339 0.89614 1.20059 0.84120 0.84833 0.79876 1.90646 1.62649 1.19353 1.68833 1.47556 1.29728 1.16285 1.36056 1.19295 0.82367 0.94641 0.92014 1.22240 0.95155 1.37253 1.08991 0.93035 1.25777 0.93500 0.96950 1.02287 1.70781 1.16171 1.39309 1.28522 0.83489 0.75193 0.76396 0.74831 1.21476 1.20939 1.21550 1.21516 0.95774 0.82911 1.02532 1.23359 1.04434 1.02639 0.91100 1.23368 1.01038 0.97631 1.02038 0.91461 0.92956 0.91963 0.92704 0.92656 0.92119 0.91767 0.91354 0.91829 0.91633 0.91820 0.89468 0.95193 0.96051 0.92327 0.86479 0.86475 0.88948 0.88979 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 7.27 37.16 0.27 -2.07 16 2 C -0.05 -0.64 0.94 -153.34 -0.14 -0.79 16 3 C -0.14 -1.49 8.15 37.16 0.30 -1.18 16 4 C -0.11 -1.35 5.90 -25.01 -0.15 -1.49 16 5 C -0.12 -1.39 6.91 -24.73 -0.17 -1.56 16 6 C -0.11 -1.69 6.30 -25.07 -0.16 -1.84 16 7 C -0.11 -1.68 2.36 -90.65 -0.21 -1.90 16 8 H 0.09 1.21 5.53 -51.93 -0.29 0.92 16 9 C 0.52 10.99 4.60 -10.98 -0.05 10.94 16 10 O -0.54 -13.66 14.84 5.56 0.08 -13.57 16 11 N -0.57 -12.05 2.01 -167.47 -0.34 -12.38 16 12 C 0.24 6.11 3.70 -5.19 -0.02 6.09 16 13 C -0.60 -17.09 8.92 -34.44 -0.31 -17.40 16 14 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 15 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 16 N -0.91 -27.84 13.65 55.43 0.76 -27.09 16 17 Si 1.07 25.96 29.90 -169.99 -5.08 20.88 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.08 1.33 5.23 -67.93 -0.36 0.97 16 22 C -0.18 -2.96 9.72 -26.73 -0.26 -3.22 16 23 C -0.20 -2.98 9.78 -26.73 -0.26 -3.24 16 24 H 0.07 1.13 6.19 -51.93 -0.32 0.81 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.10 7.32 -51.93 -0.38 0.72 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.66 7.42 -51.93 -0.39 0.27 16 30 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 31 H 0.07 0.87 7.78 -51.93 -0.40 0.47 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.52 6.81 -51.93 -0.35 1.17 16 36 H 0.03 0.88 7.37 -51.93 -0.38 0.49 16 37 H 0.02 0.56 6.12 -51.93 -0.32 0.24 16 38 H 0.27 8.10 7.22 -40.82 -0.29 7.80 16 39 H 0.12 1.68 5.98 -51.93 -0.31 1.37 16 40 H 0.12 2.40 6.29 -51.93 -0.33 2.08 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.09 1.08 8.14 -51.94 -0.42 0.66 16 43 H 0.09 1.50 7.84 -51.93 -0.41 1.10 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -32.44 329.62 -8.39 -40.83 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.17 Total: 2.61 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.61 Total: -16.25 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.42 Total: -39.47 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.44 -8.39 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228853415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.810 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds