Wall clock time and date at job start Mon Mar 30 2020 08:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.05448 * 2 1 4 4 C 1.54369 * 110.04501 * 238.52710 * 2 1 3 5 5 C 1.54897 * 104.19354 * 217.08884 * 4 2 1 6 6 C 1.54887 * 102.74639 * 37.97160 * 5 4 2 7 7 C 1.53871 * 110.03050 * 121.41494 * 2 1 3 8 8 H 1.08997 * 110.03351 * 238.61989 * 7 2 1 9 9 C 1.50705 * 110.03390 * 0.02562 * 7 2 1 10 10 O 1.21277 * 119.99668 * 91.71270 * 9 7 2 11 11 N 1.34778 * 119.99873 * 271.71180 * 9 7 2 12 12 C 1.46493 * 119.99596 * 174.62717 * 11 9 7 13 13 C 1.50705 * 109.47227 * 89.99947 * 12 11 9 14 14 H 1.08000 * 119.99704 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00165 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99606 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47602 * 90.00358 * 17 15 13 19 19 H 1.48510 * 109.47006 * 210.00124 * 17 15 13 20 20 H 1.48501 * 109.47258 * 329.99536 * 17 15 13 21 21 C 1.46502 * 120.00048 * 354.62767 * 11 9 7 22 22 C 1.52998 * 117.49665 * 193.45340 * 21 11 9 23 23 C 1.52999 * 117.49915 * 124.82963 * 21 11 9 24 24 H 1.08996 * 109.47323 * 293.89570 * 1 2 3 25 25 H 1.09002 * 109.46867 * 53.89393 * 1 2 3 26 26 H 1.08998 * 109.47366 * 173.89346 * 1 2 3 27 27 H 1.08994 * 109.46677 * 181.41616 * 3 2 1 28 28 H 1.09001 * 109.47187 * 301.41854 * 3 2 1 29 29 H 1.08998 * 109.46908 * 61.41483 * 3 2 1 30 30 H 1.08996 * 110.46198 * 98.42790 * 4 2 1 31 31 H 1.09002 * 110.62625 * 335.83588 * 4 2 1 32 32 H 1.09000 * 110.75505 * 279.65242 * 5 4 2 33 33 H 1.08999 * 110.91009 * 156.35567 * 5 4 2 34 34 H 1.08997 * 110.48553 * 203.37494 * 6 5 4 35 35 H 1.09003 * 110.48825 * 80.73822 * 6 5 4 36 36 H 1.08998 * 109.47494 * 330.00002 * 12 11 9 37 37 H 1.09003 * 109.47006 * 209.99709 * 12 11 9 38 38 H 0.96994 * 120.00176 * 359.97438 * 16 15 13 39 39 H 1.08997 * 115.54822 * 339.15901 * 21 11 9 40 40 H 1.09005 * 117.49789 * 359.97438 * 22 21 11 41 41 H 1.09002 * 117.50092 * 145.01851 * 22 21 11 42 42 H 1.08989 * 117.50084 * 214.98012 * 23 21 11 43 43 H 1.09002 * 117.49683 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0591 -0.7571 -1.2368 5 6 3.3146 -1.5014 -0.7182 6 6 2.8882 -1.9405 0.7046 7 6 2.0571 -0.7535 1.2337 8 1 2.6859 -0.0951 1.8329 9 6 0.9037 -1.2597 2.0612 10 8 0.4603 -2.3717 1.8673 11 7 0.3650 -0.4765 3.0167 12 6 -0.8289 -0.9202 3.7404 13 6 -0.4151 -1.6964 4.9641 14 1 0.6325 -1.8440 5.1812 15 6 -1.3740 -2.2172 5.8070 16 7 -2.6497 -2.0369 5.5428 17 14 -0.8610 -3.1786 7.3242 18 1 -0.7124 -2.2490 8.4726 19 1 -1.8974 -4.1942 7.6404 20 1 0.4343 -3.8572 7.0656 21 6 0.9735 0.8185 3.3316 22 6 0.5242 1.5162 4.6169 23 6 0.0779 2.0567 3.2569 24 1 -0.3634 0.4163 0.9395 25 1 -0.3633 0.6056 -0.8303 26 1 -0.3634 -1.0218 -0.1093 27 1 3.1443 1.4262 -0.0254 28 1 1.6761 1.9623 -0.8770 29 1 1.7174 1.9471 0.9024 30 1 2.3303 -0.0557 -2.0258 31 1 1.3164 -1.4682 -1.5986 32 1 4.1716 -0.8293 -0.6744 33 1 3.5372 -2.3688 -1.3397 34 1 3.7643 -2.1028 1.3324 35 1 2.2783 -2.8429 0.6587 36 1 -1.4308 -1.5573 3.0924 37 1 -1.4147 -0.0518 4.0419 38 1 -2.9160 -1.5374 4.7552 39 1 2.0160 0.9327 3.0345 40 1 -0.2245 1.0120 5.2281 41 1 1.2712 2.0896 5.1659 42 1 0.5312 2.9856 2.9111 43 1 -0.9639 1.9079 2.9730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228853415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:40 Heat of formation + Delta-G solvation = -47.007234 kcal Electronic energy + Delta-G solvation = -21880.859617 eV Core-core repulsion = 18925.262124 eV Total energy + Delta-G solvation = -2955.597493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78851 -39.16890 -38.11745 -35.55572 -33.86839 -33.07460 -30.80779 -28.57617 -28.23269 -25.84074 -24.97345 -23.53450 -23.12537 -21.82729 -20.78848 -19.32070 -18.75716 -18.30874 -17.02948 -16.66874 -16.26888 -15.74429 -15.47617 -15.21977 -15.07633 -14.67217 -14.49546 -13.94149 -13.78194 -13.54869 -13.51653 -13.02353 -12.87117 -12.63207 -12.54623 -12.33087 -12.28035 -12.20842 -12.02709 -11.92378 -11.68486 -11.59968 -11.43106 -11.33920 -11.27799 -11.05769 -10.63812 -10.50573 -9.28465 -8.69103 -6.45913 1.44545 1.55270 1.72036 1.73696 2.17172 2.50226 3.01759 3.07226 3.42726 3.57715 3.63818 3.82862 3.91126 4.05377 4.12901 4.29392 4.36851 4.41940 4.46264 4.50517 4.65888 4.73894 4.77242 4.78747 4.85538 4.86628 4.90834 5.02814 5.04327 5.07459 5.12397 5.18473 5.22817 5.32134 5.32932 5.38243 5.44878 5.57126 5.57589 5.80427 6.13293 6.42636 6.71478 7.28212 7.43249 8.62938 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.006462 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.748593 B = 4332.140556 C = 4860.705701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.134 4.134 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.099 4.099 8 H 0.111 0.889 9 C 0.514 3.486 10 O -0.598 6.598 11 N -0.573 5.573 12 C 0.255 3.745 13 C -0.604 4.604 14 H 0.040 0.960 15 C -0.032 4.032 16 N -0.932 5.932 17 Si 1.119 2.881 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.061 3.939 22 C -0.188 4.188 23 C -0.174 4.174 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.046 0.954 36 H -0.018 1.018 37 H 0.017 0.983 38 H 0.253 0.747 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.140 0.860 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.109 11.365 -11.214 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.046 4.046 3 C -0.191 4.191 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.159 4.159 7 C -0.120 4.120 8 H 0.129 0.871 9 C 0.305 3.695 10 O -0.479 6.479 11 N -0.301 5.301 12 C 0.133 3.867 13 C -0.642 4.642 14 H 0.059 0.941 15 C -0.230 4.230 16 N -0.569 5.569 17 Si 0.940 3.060 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.043 4.043 22 C -0.225 4.225 23 C -0.212 4.212 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.000 1.000 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.172 0.828 40 H 0.088 0.912 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.273 9.978 -10.002 19.385 hybrid contribution -0.469 0.171 -0.976 1.096 sum 12.804 10.150 -10.978 19.684 Atomic orbital electron populations 1.22077 0.96408 1.00168 1.02065 1.21055 0.93885 0.96991 0.92654 1.21937 1.01956 0.92298 1.02952 1.22521 0.97086 0.98864 0.96566 1.22441 0.97972 1.00499 0.93691 1.22406 0.98570 0.96608 0.98356 1.22252 0.93904 0.99221 0.96656 0.87077 1.21173 0.84880 0.83951 0.79538 1.90609 1.64767 1.22175 1.70384 1.47565 1.28537 1.18314 1.35710 1.18706 0.84045 0.93320 0.90608 1.22457 0.94525 1.37388 1.09850 0.94126 1.27321 0.93044 0.97402 1.05251 1.70903 1.17166 1.40438 1.28428 0.82911 0.75117 0.75682 0.72269 1.18606 1.20725 1.20621 1.22002 0.97675 0.81310 1.03295 1.23328 1.04474 1.03283 0.91436 1.23402 0.99721 0.98212 0.99862 0.93566 0.90526 0.96043 0.90349 0.91024 0.92031 0.88590 0.93475 0.88718 0.90791 0.90623 0.93481 1.00008 0.96501 0.93797 0.82810 0.91208 0.85369 0.84236 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 7.27 71.98 0.52 -4.08 16 2 C -0.05 -1.10 0.94 -51.42 -0.05 -1.15 16 3 C -0.13 -2.18 8.15 71.98 0.59 -1.59 16 4 C -0.11 -2.37 5.90 31.71 0.19 -2.19 16 5 C -0.11 -2.14 6.91 31.89 0.22 -1.92 16 6 C -0.12 -3.45 6.30 31.67 0.20 -3.25 16 7 C -0.10 -2.96 2.36 -10.82 -0.03 -2.99 16 8 H 0.11 2.73 5.53 -2.39 -0.01 2.71 16 9 C 0.51 22.46 4.60 87.66 0.40 22.86 16 10 O -0.60 -32.84 14.84 -3.02 -0.04 -32.89 16 11 N -0.57 -25.21 2.01 -802.15 -1.61 -26.82 16 12 C 0.25 14.11 3.70 85.64 0.32 14.43 16 13 C -0.60 -36.18 8.92 25.60 0.23 -35.95 16 14 H 0.04 2.47 7.81 -2.91 -0.02 2.44 16 15 C -0.03 -1.95 5.46 84.65 0.46 -1.49 16 16 N -0.93 -59.49 13.65 21.45 0.29 -59.20 16 17 Si 1.12 52.99 29.90 68.60 2.05 55.04 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 C 0.06 1.96 5.23 44.99 0.24 2.20 16 22 C -0.19 -6.03 9.72 30.59 0.30 -5.73 16 23 C -0.17 -4.74 9.78 30.59 0.30 -4.44 16 24 H 0.05 1.59 6.19 -2.39 -0.01 1.58 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.02 0.80 7.32 -2.39 -0.02 0.78 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.01 7.42 -2.39 -0.02 0.99 16 30 H 0.10 1.45 7.84 -2.39 -0.02 1.43 16 31 H 0.05 1.18 7.78 -2.39 -0.02 1.16 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.72 6.81 -2.39 -0.02 1.71 16 36 H -0.02 -1.16 7.37 -2.39 -0.02 -1.18 16 37 H 0.02 0.95 6.12 -2.39 -0.01 0.93 16 38 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 39 H 0.15 3.78 5.98 -2.39 -0.01 3.77 16 40 H 0.07 2.95 6.29 -2.38 -0.02 2.94 16 41 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.07 2.25 7.84 -2.39 -0.02 2.23 16 Total: -1.00 -78.59 329.62 5.65 -72.94 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.08 Total: 16.20 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 3.89 Total: -25.28 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.32 Total: -86.02 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.04 Total: -32.89 kcal Atomic # 14 Polarization: 52.99 SS G_CDS: 2.05 Total: 55.04 kcal Total: -78.59 5.65 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228853415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.934 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds