Wall clock time and date at job start Mon Mar 30 2020 08:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.02093 * 2 1 4 4 C 1.54266 * 110.03497 * 238.55563 * 2 1 3 5 5 C 1.54888 * 104.19841 * 264.32940 * 4 2 1 6 6 C 1.54888 * 102.74593 * 322.05628 * 5 4 2 7 7 C 1.53879 * 110.03096 * 121.39100 * 2 1 3 8 8 H 1.08999 * 110.03305 * 359.94892 * 7 2 1 9 9 C 1.50707 * 110.02991 * 238.56936 * 7 2 1 10 10 O 1.21282 * 119.99720 * 273.92351 * 9 7 2 11 11 N 1.34776 * 119.99808 * 93.92769 * 9 7 2 12 12 C 1.46503 * 119.99579 * 185.54737 * 11 9 7 13 13 C 1.50700 * 109.47011 * 269.99584 * 12 11 9 14 14 H 1.08004 * 120.00082 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00136 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99819 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47138 * 90.00258 * 17 15 13 19 19 H 1.48498 * 109.46840 * 209.99984 * 17 15 13 20 20 H 1.48500 * 109.47416 * 329.99939 * 17 15 13 21 21 C 1.46492 * 120.00187 * 5.54342 * 11 9 7 22 22 C 1.53000 * 117.49966 * 166.95361 * 21 11 9 23 23 C 1.53006 * 117.49969 * 235.61147 * 21 11 9 24 24 H 1.08997 * 109.47185 * 298.61146 * 1 2 3 25 25 H 1.09001 * 109.46786 * 58.60761 * 1 2 3 26 26 H 1.09000 * 109.47220 * 178.61096 * 1 2 3 27 27 H 1.08995 * 109.47812 * 176.94153 * 3 2 1 28 28 H 1.08998 * 109.47068 * 296.94510 * 3 2 1 29 29 H 1.09003 * 109.47073 * 56.93922 * 3 2 1 30 30 H 1.09001 * 110.48057 * 23.00407 * 4 2 1 31 31 H 1.09001 * 110.48863 * 145.64556 * 4 2 1 32 32 H 1.09003 * 110.75549 * 80.36557 * 5 4 2 33 33 H 1.08994 * 110.75578 * 203.74214 * 5 4 2 34 34 H 1.08999 * 110.48611 * 279.26336 * 6 5 4 35 35 H 1.09002 * 110.49295 * 156.61985 * 6 5 4 36 36 H 1.08999 * 109.47352 * 29.99596 * 12 11 9 37 37 H 1.09001 * 109.46875 * 150.00006 * 12 11 9 38 38 H 0.97003 * 120.00607 * 179.97438 * 16 15 13 39 39 H 1.09002 * 115.55168 * 21.28592 * 21 11 9 40 40 H 1.08997 * 117.50174 * 215.00650 * 22 21 11 41 41 H 1.09003 * 117.49904 * 0.02562 * 22 21 11 42 42 H 1.08997 * 117.49496 * 359.97438 * 23 21 11 43 43 H 1.08995 * 117.49504 * 144.97425 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3280 -2.1905 -0.7181 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1177 1.8335 9 6 2.9275 0.1574 2.0615 10 8 4.1068 0.2701 1.8014 11 7 2.3956 0.8463 3.0905 12 6 3.2109 1.8221 3.8180 13 6 3.9082 1.1380 4.9656 14 1 3.7593 0.0819 5.1357 15 6 4.7363 1.8603 5.7983 16 7 4.9173 3.1464 5.5916 17 14 5.6012 1.0121 7.2203 18 1 6.9185 0.5003 6.7641 19 1 5.8032 1.9822 8.3264 20 1 4.7696 -0.1205 7.7009 21 6 1.0021 0.6195 3.4814 22 6 0.5437 1.1890 4.8254 23 6 0.0724 1.8341 3.5197 24 1 -0.3633 0.4921 0.9021 25 1 -0.3633 0.5353 -0.8773 26 1 -0.3633 -1.0273 -0.0249 27 1 3.1423 1.4277 0.0548 28 1 1.7407 1.9383 -0.9161 29 1 1.6514 1.9709 0.8613 30 1 1.3061 -0.7705 -2.0250 31 1 2.9811 -0.3008 -1.5965 32 1 1.4030 -2.7654 -0.6738 33 1 3.0675 -2.6937 -1.3410 34 1 3.9439 -1.6764 0.6579 35 1 2.7400 -2.8191 1.3324 36 1 3.9536 2.2494 3.1443 37 1 2.5705 2.6156 4.2032 38 1 5.4996 3.6547 6.1777 39 1 0.5742 -0.3321 3.1658 40 1 -0.1856 0.6121 5.3941 41 1 1.2789 1.7328 5.4187 42 1 0.4978 2.8019 3.2545 43 1 -0.9669 1.6816 3.2289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228853427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:45 Heat of formation + Delta-G solvation = -25.592153 kcal Electronic energy + Delta-G solvation = -21797.468677 eV Core-core repulsion = 18842.799811 eV Total energy + Delta-G solvation = -2954.668866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25769 -37.76522 -36.43812 -33.17322 -32.16802 -31.79842 -29.42820 -27.20478 -27.02081 -24.54911 -23.01197 -22.06776 -21.69025 -20.54726 -19.28499 -17.51687 -16.85148 -16.37044 -15.42564 -15.33348 -14.71361 -14.29577 -14.03669 -13.77979 -13.59535 -13.28832 -12.93456 -12.65299 -12.15154 -12.06574 -11.64755 -11.51128 -11.36258 -11.15317 -11.00222 -10.90547 -10.83912 -10.59492 -10.53798 -10.44685 -10.42206 -10.37700 -10.21253 -10.07007 -9.95371 -9.47432 -8.70683 -8.41229 -7.44984 -6.01759 -4.05674 3.32645 3.38076 3.39344 3.43749 3.89261 4.39741 4.48559 4.61975 4.77201 4.83569 5.18153 5.26522 5.32821 5.36232 5.41062 5.42711 5.51294 5.53382 5.58590 5.70249 5.78465 5.81069 5.97038 6.00815 6.04112 6.05019 6.10403 6.17029 6.23821 6.29855 6.41303 6.46674 6.51266 6.60600 6.66628 6.80271 7.10296 7.45618 7.59648 7.95072 8.26731 8.49610 8.94762 9.17553 9.59180 11.06010 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.006405 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.861625 B = 4370.853255 C = 4887.133031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C -0.153 4.153 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.109 4.109 8 H 0.085 0.915 9 C 0.523 3.477 10 O -0.539 6.539 11 N -0.570 5.570 12 C 0.246 3.754 13 C -0.518 4.518 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.078 3.922 22 C -0.178 4.178 23 C -0.202 4.202 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.672 -6.836 -10.074 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 C -0.210 4.210 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.131 4.131 8 H 0.104 0.896 9 C 0.311 3.689 10 O -0.416 6.416 11 N -0.300 5.300 12 C 0.127 3.873 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.029 4.029 22 C -0.216 4.216 23 C -0.241 4.241 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.112 0.888 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.916 -6.588 -10.120 16.278 hybrid contribution 0.401 -0.333 1.018 1.144 sum -10.515 -6.921 -9.103 15.535 Atomic orbital electron populations 1.21935 0.94255 1.01380 1.01973 1.20952 0.95135 0.95486 0.93312 1.22110 1.02540 0.94862 1.01538 1.22479 1.00838 0.95276 0.96512 1.22451 1.00331 0.96668 0.96413 1.22362 1.01240 0.96157 0.95469 1.22167 0.98482 0.96020 0.96411 0.89647 1.20036 0.87926 0.80772 0.80211 1.90648 1.16286 1.64939 1.69743 1.47752 1.09877 1.41029 1.31300 1.19244 0.89902 0.86706 0.91430 1.21408 1.27118 0.95712 1.11467 0.92482 1.24920 0.96409 0.94828 0.97964 1.69927 1.38186 1.06632 1.38826 0.86534 0.80172 0.79210 0.81729 1.20616 1.21218 1.19933 1.21517 0.83585 0.96391 1.01359 1.23372 1.03321 1.03869 0.91035 1.23372 0.98990 0.98738 1.02985 0.92158 0.92734 0.92780 0.91225 0.93082 0.91997 0.91822 0.91317 0.91852 0.91691 0.89573 0.91875 0.94152 0.94958 0.92797 0.86624 0.89123 0.86297 0.88770 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.14 37.16 0.30 -1.20 16 2 C -0.05 -0.65 0.94 -153.39 -0.14 -0.79 16 3 C -0.15 -2.37 7.21 37.16 0.27 -2.10 16 4 C -0.11 -1.36 5.90 -25.07 -0.15 -1.51 16 5 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 6 C -0.11 -1.67 6.31 -25.07 -0.16 -1.83 16 7 C -0.11 -1.70 2.48 -90.65 -0.22 -1.92 16 8 H 0.09 1.20 5.31 -51.93 -0.28 0.92 16 9 C 0.52 10.90 4.57 -10.98 -0.05 10.85 16 10 O -0.54 -13.53 14.40 5.56 0.08 -13.45 16 11 N -0.57 -12.08 2.50 -167.47 -0.42 -12.50 16 12 C 0.25 6.39 4.39 -5.19 -0.02 6.37 16 13 C -0.52 -14.68 8.95 -34.44 -0.31 -14.98 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 21 C 0.08 1.31 6.06 -67.93 -0.41 0.89 16 22 C -0.18 -2.96 9.73 -26.69 -0.26 -3.22 16 23 C -0.20 -3.00 10.03 -26.69 -0.27 -3.27 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.29 6.59 -51.93 -0.34 0.94 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.03 7.48 -51.93 -0.39 0.64 16 30 H 0.06 0.64 7.84 -51.93 -0.41 0.24 16 31 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.49 6.89 -51.93 -0.36 1.13 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 1.20 7.51 -51.93 -0.39 0.81 16 37 H 0.03 0.85 6.25 -51.93 -0.32 0.52 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 1.65 5.98 -51.93 -0.31 1.34 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.12 2.42 6.29 -51.93 -0.33 2.09 16 42 H 0.09 1.54 7.86 -51.93 -0.41 1.14 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -31.49 333.37 -8.58 -40.07 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.29 Total: 2.36 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.69 Total: -12.65 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.32 Total: -38.42 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.49 -8.58 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228853427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.482 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds