Wall clock time and date at job start Mon Mar 30 2020 08:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.02093 * 2 1 4 4 C 1.54266 * 110.03497 * 238.55563 * 2 1 3 5 5 C 1.54888 * 104.19841 * 264.32940 * 4 2 1 6 6 C 1.54888 * 102.74593 * 322.05628 * 5 4 2 7 7 C 1.53879 * 110.03096 * 121.39100 * 2 1 3 8 8 H 1.08999 * 110.03305 * 359.94892 * 7 2 1 9 9 C 1.50707 * 110.02991 * 238.56936 * 7 2 1 10 10 O 1.21282 * 119.99720 * 273.92351 * 9 7 2 11 11 N 1.34776 * 119.99808 * 93.92769 * 9 7 2 12 12 C 1.46503 * 119.99579 * 185.54737 * 11 9 7 13 13 C 1.50700 * 109.47011 * 269.99584 * 12 11 9 14 14 H 1.08004 * 120.00082 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00136 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99819 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47138 * 90.00258 * 17 15 13 19 19 H 1.48498 * 109.46840 * 209.99984 * 17 15 13 20 20 H 1.48500 * 109.47416 * 329.99939 * 17 15 13 21 21 C 1.46492 * 120.00187 * 5.54342 * 11 9 7 22 22 C 1.53000 * 117.49966 * 166.95361 * 21 11 9 23 23 C 1.53006 * 117.49969 * 235.61147 * 21 11 9 24 24 H 1.08997 * 109.47185 * 298.61146 * 1 2 3 25 25 H 1.09001 * 109.46786 * 58.60761 * 1 2 3 26 26 H 1.09000 * 109.47220 * 178.61096 * 1 2 3 27 27 H 1.08995 * 109.47812 * 176.94153 * 3 2 1 28 28 H 1.08998 * 109.47068 * 296.94510 * 3 2 1 29 29 H 1.09003 * 109.47073 * 56.93922 * 3 2 1 30 30 H 1.09001 * 110.48057 * 23.00407 * 4 2 1 31 31 H 1.09001 * 110.48863 * 145.64556 * 4 2 1 32 32 H 1.09003 * 110.75549 * 80.36557 * 5 4 2 33 33 H 1.08994 * 110.75578 * 203.74214 * 5 4 2 34 34 H 1.08999 * 110.48611 * 279.26336 * 6 5 4 35 35 H 1.09002 * 110.49295 * 156.61985 * 6 5 4 36 36 H 1.08999 * 109.47352 * 29.99596 * 12 11 9 37 37 H 1.09001 * 109.46875 * 150.00006 * 12 11 9 38 38 H 0.97003 * 120.00607 * 179.97438 * 16 15 13 39 39 H 1.09002 * 115.55168 * 21.28592 * 21 11 9 40 40 H 1.08997 * 117.50174 * 215.00650 * 22 21 11 41 41 H 1.09003 * 117.49904 * 0.02562 * 22 21 11 42 42 H 1.08997 * 117.49496 * 359.97438 * 23 21 11 43 43 H 1.08995 * 117.49504 * 144.97425 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3280 -2.1905 -0.7181 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1177 1.8335 9 6 2.9275 0.1574 2.0615 10 8 4.1068 0.2701 1.8014 11 7 2.3956 0.8463 3.0905 12 6 3.2109 1.8221 3.8180 13 6 3.9082 1.1380 4.9656 14 1 3.7593 0.0819 5.1357 15 6 4.7363 1.8603 5.7983 16 7 4.9173 3.1464 5.5916 17 14 5.6012 1.0121 7.2203 18 1 6.9185 0.5003 6.7641 19 1 5.8032 1.9822 8.3264 20 1 4.7696 -0.1205 7.7009 21 6 1.0021 0.6195 3.4814 22 6 0.5437 1.1890 4.8254 23 6 0.0724 1.8341 3.5197 24 1 -0.3633 0.4921 0.9021 25 1 -0.3633 0.5353 -0.8773 26 1 -0.3633 -1.0273 -0.0249 27 1 3.1423 1.4277 0.0548 28 1 1.7407 1.9383 -0.9161 29 1 1.6514 1.9709 0.8613 30 1 1.3061 -0.7705 -2.0250 31 1 2.9811 -0.3008 -1.5965 32 1 1.4030 -2.7654 -0.6738 33 1 3.0675 -2.6937 -1.3410 34 1 3.9439 -1.6764 0.6579 35 1 2.7400 -2.8191 1.3324 36 1 3.9536 2.2494 3.1443 37 1 2.5705 2.6156 4.2032 38 1 5.4996 3.6547 6.1777 39 1 0.5742 -0.3321 3.1658 40 1 -0.1856 0.6121 5.3941 41 1 1.2789 1.7328 5.4187 42 1 0.4978 2.8019 3.2545 43 1 -0.9669 1.6816 3.2289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228853427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:44 Heat of formation + Delta-G solvation = -43.846312 kcal Electronic energy + Delta-G solvation = -21798.260236 eV Core-core repulsion = 18842.799811 eV Total energy + Delta-G solvation = -2955.460425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66999 -39.10205 -37.97846 -35.22440 -33.77569 -33.06233 -30.88455 -28.88804 -28.18593 -25.85594 -24.85597 -23.44137 -23.04373 -21.71355 -20.59930 -19.01666 -18.57052 -18.23895 -17.09545 -16.55309 -16.33670 -15.88297 -15.42103 -15.15287 -14.98241 -14.45270 -14.43954 -13.90820 -13.60762 -13.47970 -13.39738 -12.91251 -12.82546 -12.69346 -12.63356 -12.31074 -12.21477 -12.18774 -12.10887 -11.88039 -11.63285 -11.53222 -11.48364 -11.38097 -11.28843 -11.20997 -10.67061 -10.37641 -9.19424 -8.23007 -6.37548 1.32671 1.35894 1.45530 1.82831 2.25308 2.41375 3.05208 3.10315 3.49679 3.64439 3.70355 3.91385 4.00119 4.13393 4.21551 4.35735 4.41816 4.46712 4.52065 4.56985 4.77436 4.82067 4.85847 4.90142 4.92267 5.03462 5.06346 5.07316 5.12695 5.13426 5.22019 5.26057 5.27776 5.37587 5.42438 5.43437 5.49750 5.56693 5.62417 5.85595 6.05923 6.69536 6.84966 7.28082 7.53957 8.83186 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.006405 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.861625 B = 4370.853255 C = 4887.133031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C -0.149 4.149 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.101 4.101 8 H 0.112 0.888 9 C 0.514 3.486 10 O -0.597 6.597 11 N -0.577 5.577 12 C 0.268 3.732 13 C -0.531 4.531 14 H 0.049 0.951 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.282 1.282 19 H -0.273 1.273 20 H -0.262 1.262 21 C 0.061 3.939 22 C -0.187 4.187 23 C -0.175 4.175 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.076 0.924 36 H -0.012 1.012 37 H 0.022 0.978 38 H 0.266 0.734 39 H 0.154 0.846 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 -9.190 -10.625 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.159 4.159 7 C -0.122 4.122 8 H 0.130 0.870 9 C 0.304 3.696 10 O -0.479 6.479 11 N -0.305 5.305 12 C 0.147 3.853 13 C -0.569 4.569 14 H 0.067 0.933 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.186 1.186 21 C -0.044 4.044 22 C -0.225 4.225 23 C -0.214 4.214 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.006 0.994 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.171 0.829 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.258 -8.951 -10.671 19.932 hybrid contribution 1.463 0.477 1.173 1.935 sum -12.794 -8.473 -9.498 18.047 Atomic orbital electron populations 1.21916 0.91086 1.03248 1.02790 1.21035 0.97461 0.93349 0.92798 1.22046 0.99585 0.97161 1.01797 1.22496 1.00780 0.95193 0.96569 1.22440 1.01724 0.96658 0.93789 1.22403 0.99021 0.96133 0.98300 1.22264 0.98065 0.95174 0.96657 0.87043 1.21113 0.87915 0.80635 0.79890 1.90611 1.19244 1.66887 1.71123 1.47730 1.11613 1.40066 1.31135 1.18589 0.89162 0.87554 0.90003 1.21613 1.27737 0.95312 1.12278 0.93318 1.25825 0.97035 0.95500 1.00765 1.70048 1.38841 1.08083 1.40007 0.85471 0.78622 0.78601 0.78480 1.20813 1.19829 1.18599 1.21996 0.81376 0.99012 1.01967 1.23335 1.03376 1.04498 0.91279 1.23400 1.00601 0.96594 1.00792 0.92162 0.91216 0.90347 0.95654 0.90847 0.93807 0.88702 0.93461 0.88740 0.90848 0.93537 0.90514 0.99435 0.95995 0.92486 0.82877 0.85547 0.90932 0.91194 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.14 71.98 0.59 -1.66 16 2 C -0.05 -1.13 0.94 -51.46 -0.05 -1.18 16 3 C -0.15 -4.68 7.21 71.98 0.52 -4.16 16 4 C -0.11 -2.41 5.90 31.67 0.19 -2.22 16 5 C -0.11 -2.15 6.91 31.88 0.22 -1.93 16 6 C -0.12 -3.40 6.31 31.67 0.20 -3.20 16 7 C -0.10 -3.00 2.48 -10.81 -0.03 -3.02 16 8 H 0.11 2.71 5.31 -2.39 -0.01 2.69 16 9 C 0.51 22.35 4.57 87.66 0.40 22.75 16 10 O -0.60 -32.54 14.40 -3.03 -0.04 -32.58 16 11 N -0.58 -25.42 2.50 -802.13 -2.00 -27.43 16 12 C 0.27 14.96 4.39 85.63 0.38 15.34 16 13 C -0.53 -31.56 8.95 25.60 0.23 -31.33 16 14 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 15 C 0.01 0.44 5.46 84.66 0.46 0.90 16 16 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 17 Si 0.96 46.32 29.54 68.60 2.03 48.34 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 21 C 0.06 1.95 6.06 44.99 0.27 2.23 16 22 C -0.19 -6.03 9.73 30.62 0.30 -5.73 16 23 C -0.18 -4.86 10.03 30.62 0.31 -4.55 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.02 0.99 6.59 -2.39 -0.02 0.98 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.50 7.48 -2.39 -0.02 1.48 16 30 H 0.09 1.47 7.84 -2.39 -0.02 1.46 16 31 H 0.05 1.20 7.86 -2.39 -0.02 1.18 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.68 6.89 -2.39 -0.02 1.67 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H -0.01 -0.81 7.51 -2.39 -0.02 -0.83 16 37 H 0.02 1.25 6.25 -2.39 -0.01 1.24 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.15 3.76 5.98 -2.39 -0.01 3.74 16 40 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 3.06 6.29 -2.39 -0.02 3.05 16 42 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 43 H 0.14 2.57 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -76.37 333.37 5.22 -71.15 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.97 Total: 15.71 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.98 Total: -17.77 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.72 Total: -84.86 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.04 Total: -32.58 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -76.37 5.22 -71.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228853427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.305 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds