Wall clock time and date at job start Mon Mar 30 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3 14 14 N 1.31052 * 126.46380 * 119.71164 * 13 2 1 15 15 C 1.35017 * 105.59135 * 179.86648 * 14 13 2 16 16 N 1.38836 * 126.38858 * 180.12867 * 15 14 13 17 17 C 1.46851 * 111.00192 * 304.51057 * 16 15 14 18 18 C 1.53034 * 109.52329 * 174.15658 * 17 16 15 19 19 C 1.53124 * 109.27641 * 59.18229 * 18 17 16 20 20 C 1.53113 * 109.16070 * 302.34260 * 19 18 17 21 21 C 1.46849 * 111.00364 * 180.29801 * 16 15 14 22 22 N 1.30642 * 107.22516 * 0.40530 * 15 14 13 23 23 O 1.21293 * 110.12660 * 359.74121 * 22 15 14 24 24 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 27 27 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 28 28 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 29 29 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.45908 * 294.17779 * 17 16 15 31 31 H 1.09001 * 109.45661 * 54.14466 * 17 16 15 32 32 H 1.08993 * 109.50824 * 299.24384 * 18 17 16 33 33 H 1.08994 * 109.50076 * 179.11844 * 18 17 16 34 34 H 1.08998 * 109.52089 * 182.43836 * 19 18 17 35 35 H 1.08995 * 109.57522 * 62.28153 * 19 18 17 36 36 H 1.09002 * 109.50335 * 297.71455 * 20 19 18 37 37 H 1.09003 * 109.53903 * 177.61753 * 20 19 18 38 38 H 1.08999 * 109.46410 * 305.86213 * 21 16 15 39 39 H 1.09002 * 109.46110 * 65.83561 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 1.6543 0.2830 4.7989 9 14 2.9679 -1.9856 3.9026 10 1 4.4214 -1.6829 3.8717 11 1 2.6251 -2.6362 5.1927 12 1 2.6287 -2.8991 2.7820 13 6 2.0324 -0.7103 -1.2304 14 7 2.7845 -0.1976 -2.1732 15 6 2.9829 -1.1948 -3.0616 16 7 3.7261 -1.1195 -4.2319 17 6 3.2489 -0.0267 -5.0891 18 6 4.1781 0.1195 -6.2962 19 6 4.2003 -1.1961 -7.0794 20 6 4.6542 -2.3260 -6.1511 21 6 3.7113 -2.4013 -4.9482 22 7 2.3401 -2.2419 -2.6178 23 8 1.7900 -1.9804 -1.5689 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1263 -0.7995 1.2056 28 1 1.6053 -1.7198 1.2951 29 1 1.9047 -0.0380 5.6792 30 1 2.2388 -0.2496 -5.4330 31 1 3.2420 0.9036 -4.5212 32 1 5.1854 0.3559 -5.9535 33 1 3.8148 0.9203 -6.9401 34 1 4.8942 -1.1105 -7.9155 35 1 3.2009 -1.4136 -7.4562 36 1 5.6691 -2.1279 -5.8061 37 1 4.6317 -3.2726 -6.6911 38 1 4.0401 -3.1956 -4.2781 39 1 2.6992 -2.6130 -5.2931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235097755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:21 Heat of formation + Delta-G solvation = 58.759842 kcal Electronic energy + Delta-G solvation = -20187.358719 eV Core-core repulsion = 17132.807287 eV Total energy + Delta-G solvation = -3054.551432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.11618 -39.49944 -36.02526 -35.40816 -33.25823 -32.20265 -31.33496 -30.34143 -27.73219 -25.29617 -24.78277 -23.53455 -22.73811 -21.92569 -20.29410 -19.57301 -17.67319 -17.47342 -16.95746 -16.16618 -15.24859 -14.96881 -14.70080 -14.37647 -14.13852 -13.84120 -13.67140 -13.52853 -12.80814 -12.56591 -12.23741 -12.19668 -11.71981 -11.57123 -11.51041 -11.15457 -11.06730 -10.98015 -10.88023 -10.80699 -10.61456 -10.37707 -10.20371 -9.86120 -9.66121 -9.29800 -8.63380 -8.60546 -6.11759 -4.11753 1.50749 2.46493 3.01879 3.29005 3.31156 3.36924 3.41102 4.21069 4.39002 4.40083 4.55091 4.59683 4.73844 4.90794 5.02131 5.21401 5.22034 5.28411 5.39451 5.50634 5.56636 5.58633 5.63788 5.69727 5.73761 5.78754 5.88379 6.02172 6.10530 6.18021 6.42775 6.50759 6.56033 6.80468 6.87690 7.00869 7.17762 7.63356 8.40312 8.54661 8.90070 9.49244 11.00614 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036295 B = 0.004127 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.260570 B = 6782.765069 C = 7077.066626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 H 0.112 0.888 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.227 3.773 14 N -0.499 5.499 15 C 0.342 3.658 16 N -0.436 5.436 17 C 0.063 3.937 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.117 4.117 21 C 0.061 3.939 22 N -0.429 5.429 23 O 0.068 5.932 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.018 0.982 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 -2.860 -21.665 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.011 4.011 3 H 0.130 0.870 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.188 1.188 13 C 0.007 3.993 14 N -0.235 5.235 15 C -0.020 4.020 16 N -0.162 5.162 17 C -0.064 4.064 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.066 4.066 22 N -0.150 5.150 23 O 0.018 5.982 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.287 -3.198 -21.961 22.435 hybrid contribution -0.045 -0.994 0.214 1.018 sum 3.242 -4.192 -21.747 22.383 Atomic orbital electron populations 1.21795 0.92539 1.02614 1.02464 1.20141 0.96844 0.98889 0.85273 0.87003 1.19723 0.96393 0.96741 0.91750 1.20915 1.36466 1.09901 0.88530 0.90181 1.24932 0.95341 0.96826 0.95821 1.69887 1.46486 1.39033 0.98155 0.86877 0.80814 0.84438 0.77855 1.20198 1.21158 1.18844 1.29491 0.90987 0.81780 0.97028 1.71906 1.19479 1.28743 1.03383 1.23761 0.95183 0.86737 0.96285 1.58548 1.47582 1.07549 1.02474 1.22233 0.96743 0.93774 0.93637 1.21627 1.00757 0.97716 0.95338 1.21635 1.01621 0.94905 0.98059 1.21628 0.99849 0.99079 0.94915 1.22150 0.99674 0.89118 0.95689 1.74921 1.15191 1.24249 1.00608 1.85232 1.54182 1.29767 1.28994 0.92352 0.89085 0.93875 0.96394 0.95306 0.92526 0.93926 0.88813 0.90491 0.90626 0.91265 0.92026 0.90639 0.90688 0.89618 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.98 37.15 0.33 -1.95 16 2 C 0.01 0.17 2.81 -91.78 -0.26 -0.09 16 3 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16 4 C -0.01 -0.18 3.50 -27.88 -0.10 -0.28 16 5 C -0.52 -13.78 8.96 -34.44 -0.31 -14.09 16 6 H 0.08 2.22 7.30 -52.49 -0.38 1.83 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 9 Si 0.87 21.22 27.46 -169.99 -4.67 16.55 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.26 -6.23 6.55 56.52 0.37 -5.86 16 13 C 0.23 4.28 7.01 -12.99 -0.09 4.19 16 14 N -0.50 -9.38 11.29 -12.67 -0.14 -9.53 16 15 C 0.34 6.01 7.38 -321.19 -2.37 3.64 16 16 N -0.44 -6.24 4.73 -176.66 -0.83 -7.07 16 17 C 0.06 0.74 5.39 -3.83 -0.02 0.71 16 18 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16 19 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 20 C -0.12 -1.01 6.09 -26.66 -0.16 -1.17 16 21 C 0.06 0.72 4.88 -3.83 -0.02 0.70 16 22 N -0.43 -7.89 11.20 28.64 0.32 -7.57 16 23 O 0.07 1.30 11.30 18.07 0.20 1.50 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.42 7.56 -51.93 -0.39 0.03 16 28 H 0.03 0.66 7.21 -51.93 -0.37 0.28 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -29.98 315.96 -9.15 -39.13 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -6.15 Total: -3.34 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.41 Total: -8.64 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.12 Total: -49.97 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.20 Total: 1.50 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.98 -9.15 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235097755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.887 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds