Wall clock time and date at job start Mon Mar 30 2020 06:28:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09007 * 109.47297 * 2 1
4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3
5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1
6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2
7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2
8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4
9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4
10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5
11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5
12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5
13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3
14 14 N 1.31052 * 126.46380 * 119.71164 * 13 2 1
15 15 C 1.35017 * 105.59135 * 179.86648 * 14 13 2
16 16 N 1.38836 * 126.38858 * 180.12867 * 15 14 13
17 17 C 1.46851 * 111.00192 * 304.51057 * 16 15 14
18 18 C 1.53034 * 109.52329 * 174.15658 * 17 16 15
19 19 C 1.53124 * 109.27641 * 59.18229 * 18 17 16
20 20 C 1.53113 * 109.16070 * 302.34260 * 19 18 17
21 21 C 1.46849 * 111.00364 * 180.29801 * 16 15 14
22 22 N 1.30642 * 107.22516 * 0.40530 * 15 14 13
23 23 O 1.21293 * 110.12660 * 359.74121 * 22 15 14
24 24 H 1.09000 * 109.46966 * 179.97438 * 1 2 3
25 25 H 1.09003 * 109.47367 * 300.00045 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99991 * 1 2 3
27 27 H 1.09000 * 109.47211 * 174.99718 * 4 2 1
28 28 H 1.09007 * 109.46376 * 55.00260 * 4 2 1
29 29 H 0.96995 * 120.00181 * 179.97438 * 8 7 5
30 30 H 1.09002 * 109.45908 * 294.17779 * 17 16 15
31 31 H 1.09001 * 109.45661 * 54.14466 * 17 16 15
32 32 H 1.08993 * 109.50824 * 299.24384 * 18 17 16
33 33 H 1.08994 * 109.50076 * 179.11844 * 18 17 16
34 34 H 1.08998 * 109.52089 * 182.43836 * 19 18 17
35 35 H 1.08995 * 109.57522 * 62.28153 * 19 18 17
36 36 H 1.09002 * 109.50335 * 297.71455 * 20 19 18
37 37 H 1.09003 * 109.53903 * 177.61753 * 20 19 18
38 38 H 1.08999 * 109.46410 * 305.86213 * 21 16 15
39 39 H 1.09002 * 109.46110 * 65.83561 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.6412 0.0570 2.4766
6 1 1.0804 0.9745 2.3757
7 6 1.9976 -0.3990 3.7280
8 7 1.6543 0.2830 4.7989
9 14 2.9679 -1.9856 3.9026
10 1 4.4214 -1.6829 3.8717
11 1 2.6251 -2.6362 5.1927
12 1 2.6287 -2.8991 2.7820
13 6 2.0324 -0.7103 -1.2304
14 7 2.7845 -0.1976 -2.1732
15 6 2.9829 -1.1948 -3.0616
16 7 3.7261 -1.1195 -4.2319
17 6 3.2489 -0.0267 -5.0891
18 6 4.1781 0.1195 -6.2962
19 6 4.2003 -1.1961 -7.0794
20 6 4.6542 -2.3260 -6.1511
21 6 3.7113 -2.4013 -4.9482
22 7 2.3401 -2.2419 -2.6178
23 8 1.7900 -1.9804 -1.5689
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 3.1263 -0.7995 1.2056
28 1 1.6053 -1.7198 1.2951
29 1 1.9047 -0.0380 5.6792
30 1 2.2388 -0.2496 -5.4330
31 1 3.2420 0.9036 -4.5212
32 1 5.1854 0.3559 -5.9535
33 1 3.8148 0.9203 -6.9401
34 1 4.8942 -1.1105 -7.9155
35 1 3.2009 -1.4136 -7.4562
36 1 5.6691 -2.1279 -5.8061
37 1 4.6317 -3.2726 -6.6911
38 1 4.0401 -3.1956 -4.2781
39 1 2.6992 -2.6130 -5.2931
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235097755.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:28:21
Heat of formation + Delta-G solvation = 58.759842 kcal
Electronic energy + Delta-G solvation = -20187.358719 eV
Core-core repulsion = 17132.807287 eV
Total energy + Delta-G solvation = -3054.551432 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-45.11618 -39.49944 -36.02526 -35.40816 -33.25823 -32.20265 -31.33496 -30.34143
-27.73219 -25.29617 -24.78277 -23.53455 -22.73811 -21.92569 -20.29410 -19.57301
-17.67319 -17.47342 -16.95746 -16.16618 -15.24859 -14.96881 -14.70080 -14.37647
-14.13852 -13.84120 -13.67140 -13.52853 -12.80814 -12.56591 -12.23741 -12.19668
-11.71981 -11.57123 -11.51041 -11.15457 -11.06730 -10.98015 -10.88023 -10.80699
-10.61456 -10.37707 -10.20371 -9.86120 -9.66121 -9.29800 -8.63380 -8.60546
-6.11759 -4.11753 1.50749 2.46493 3.01879 3.29005 3.31156 3.36924
3.41102 4.21069 4.39002 4.40083 4.55091 4.59683 4.73844 4.90794
5.02131 5.21401 5.22034 5.28411 5.39451 5.50634 5.56636 5.58633
5.63788 5.69727 5.73761 5.78754 5.88379 6.02172 6.10530 6.18021
6.42775 6.50759 6.56033 6.80468 6.87690 7.00869 7.17762 7.63356
8.40312 8.54661 8.90070 9.49244 11.00614
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.036295 B = 0.004127 C = 0.003955
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 771.260570 B = 6782.765069 C = 7077.066626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.009 3.991
3 H 0.112 0.888
4 C -0.008 4.008
5 C -0.520 4.520
6 H 0.080 0.920
7 C 0.073 3.927
8 N -0.897 5.897
9 Si 0.873 3.127
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.264 1.264
13 C 0.227 3.773
14 N -0.499 5.499
15 C 0.342 3.658
16 N -0.436 5.436
17 C 0.063 3.937
18 C -0.117 4.117
19 C -0.125 4.125
20 C -0.117 4.117
21 C 0.061 3.939
22 N -0.429 5.429
23 O 0.068 5.932
24 H 0.057 0.943
25 H 0.090 0.910
26 H 0.042 0.958
27 H 0.018 0.982
28 H 0.029 0.971
29 H 0.265 0.735
30 H 0.042 0.958
31 H 0.093 0.907
32 H 0.076 0.924
33 H 0.075 0.925
34 H 0.069 0.931
35 H 0.061 0.939
36 H 0.075 0.925
37 H 0.075 0.925
38 H 0.085 0.915
39 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.591 -2.860 -21.665 22.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.011 4.011
3 H 0.130 0.870
4 C -0.046 4.046
5 C -0.558 4.558
6 H 0.098 0.902
7 C -0.129 4.129
8 N -0.536 5.536
9 Si 0.700 3.300
10 H -0.202 1.202
11 H -0.212 1.212
12 H -0.188 1.188
13 C 0.007 3.993
14 N -0.235 5.235
15 C -0.020 4.020
16 N -0.162 5.162
17 C -0.064 4.064
18 C -0.154 4.154
19 C -0.162 4.162
20 C -0.155 4.155
21 C -0.066 4.066
22 N -0.150 5.150
23 O 0.018 5.982
24 H 0.076 0.924
25 H 0.109 0.891
26 H 0.061 0.939
27 H 0.036 0.964
28 H 0.047 0.953
29 H 0.075 0.925
30 H 0.061 0.939
31 H 0.112 0.888
32 H 0.095 0.905
33 H 0.094 0.906
34 H 0.087 0.913
35 H 0.080 0.920
36 H 0.094 0.906
37 H 0.093 0.907
38 H 0.104 0.896
39 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 3.287 -3.198 -21.961 22.435
hybrid contribution -0.045 -0.994 0.214 1.018
sum 3.242 -4.192 -21.747 22.383
Atomic orbital electron populations
1.21795 0.92539 1.02614 1.02464 1.20141 0.96844 0.98889 0.85273
0.87003 1.19723 0.96393 0.96741 0.91750 1.20915 1.36466 1.09901
0.88530 0.90181 1.24932 0.95341 0.96826 0.95821 1.69887 1.46486
1.39033 0.98155 0.86877 0.80814 0.84438 0.77855 1.20198 1.21158
1.18844 1.29491 0.90987 0.81780 0.97028 1.71906 1.19479 1.28743
1.03383 1.23761 0.95183 0.86737 0.96285 1.58548 1.47582 1.07549
1.02474 1.22233 0.96743 0.93774 0.93637 1.21627 1.00757 0.97716
0.95338 1.21635 1.01621 0.94905 0.98059 1.21628 0.99849 0.99079
0.94915 1.22150 0.99674 0.89118 0.95689 1.74921 1.15191 1.24249
1.00608 1.85232 1.54182 1.29767 1.28994 0.92352 0.89085 0.93875
0.96394 0.95306 0.92526 0.93926 0.88813 0.90491 0.90626 0.91265
0.92026 0.90639 0.90688 0.89618 0.93333
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 8.98 37.15 0.33 -1.95 16
2 C 0.01 0.17 2.81 -91.78 -0.26 -0.09 16
3 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16
4 C -0.01 -0.18 3.50 -27.88 -0.10 -0.28 16
5 C -0.52 -13.78 8.96 -34.44 -0.31 -14.09 16
6 H 0.08 2.22 7.30 -52.49 -0.38 1.83 16
7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16
8 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16
9 Si 0.87 21.22 27.46 -169.99 -4.67 16.55 16
10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
12 H -0.26 -6.23 6.55 56.52 0.37 -5.86 16
13 C 0.23 4.28 7.01 -12.99 -0.09 4.19 16
14 N -0.50 -9.38 11.29 -12.67 -0.14 -9.53 16
15 C 0.34 6.01 7.38 -321.19 -2.37 3.64 16
16 N -0.44 -6.24 4.73 -176.66 -0.83 -7.07 16
17 C 0.06 0.74 5.39 -3.83 -0.02 0.71 16
18 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16
19 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16
20 C -0.12 -1.01 6.09 -26.66 -0.16 -1.17 16
21 C 0.06 0.72 4.88 -3.83 -0.02 0.70 16
22 N -0.43 -7.89 11.20 28.64 0.32 -7.57 16
23 O 0.07 1.30 11.30 18.07 0.20 1.50 16
24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
25 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16
26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
27 H 0.02 0.42 7.56 -51.93 -0.39 0.03 16
28 H 0.03 0.66 7.21 -51.93 -0.37 0.28 16
29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16
39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 315.96 15.07 4.76 4.76
Total: -1.00 -29.98 315.96 -9.15 -39.13
By element:
Atomic # 1 Polarization: 2.81 SS G_CDS: -6.15 Total: -3.34 kcal
Atomic # 6 Polarization: -5.23 SS G_CDS: -3.41 Total: -8.64 kcal
Atomic # 7 Polarization: -50.08 SS G_CDS: 0.12 Total: -49.97 kcal
Atomic # 8 Polarization: 1.30 SS G_CDS: 0.20 Total: 1.50 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -29.98 -9.15 -39.13 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235097755.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.887 kcal
(2) G-P(sol) polarization free energy of solvation -29.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.906 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds