Wall clock time and date at job start Mon Mar 30 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3 14 14 N 1.31052 * 126.46380 * 119.71164 * 13 2 1 15 15 C 1.35017 * 105.59135 * 179.86648 * 14 13 2 16 16 N 1.38836 * 126.38858 * 180.12867 * 15 14 13 17 17 C 1.46851 * 111.00192 * 304.51057 * 16 15 14 18 18 C 1.53034 * 109.52329 * 174.15658 * 17 16 15 19 19 C 1.53124 * 109.27641 * 59.18229 * 18 17 16 20 20 C 1.53113 * 109.16070 * 302.34260 * 19 18 17 21 21 C 1.46849 * 111.00364 * 180.29801 * 16 15 14 22 22 N 1.30642 * 107.22516 * 0.40530 * 15 14 13 23 23 O 1.21293 * 110.12660 * 359.74121 * 22 15 14 24 24 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 27 27 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 28 28 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 29 29 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.45908 * 294.17779 * 17 16 15 31 31 H 1.09001 * 109.45661 * 54.14466 * 17 16 15 32 32 H 1.08993 * 109.50824 * 299.24384 * 18 17 16 33 33 H 1.08994 * 109.50076 * 179.11844 * 18 17 16 34 34 H 1.08998 * 109.52089 * 182.43836 * 19 18 17 35 35 H 1.08995 * 109.57522 * 62.28153 * 19 18 17 36 36 H 1.09002 * 109.50335 * 297.71455 * 20 19 18 37 37 H 1.09003 * 109.53903 * 177.61753 * 20 19 18 38 38 H 1.08999 * 109.46410 * 305.86213 * 21 16 15 39 39 H 1.09002 * 109.46110 * 65.83561 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 1.6543 0.2830 4.7989 9 14 2.9679 -1.9856 3.9026 10 1 4.4214 -1.6829 3.8717 11 1 2.6251 -2.6362 5.1927 12 1 2.6287 -2.8991 2.7820 13 6 2.0324 -0.7103 -1.2304 14 7 2.7845 -0.1976 -2.1732 15 6 2.9829 -1.1948 -3.0616 16 7 3.7261 -1.1195 -4.2319 17 6 3.2489 -0.0267 -5.0891 18 6 4.1781 0.1195 -6.2962 19 6 4.2003 -1.1961 -7.0794 20 6 4.6542 -2.3260 -6.1511 21 6 3.7113 -2.4013 -4.9482 22 7 2.3401 -2.2419 -2.6178 23 8 1.7900 -1.9804 -1.5689 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1263 -0.7995 1.2056 28 1 1.6053 -1.7198 1.2951 29 1 1.9047 -0.0380 5.6792 30 1 2.2388 -0.2496 -5.4330 31 1 3.2420 0.9036 -4.5212 32 1 5.1854 0.3559 -5.9535 33 1 3.8148 0.9203 -6.9401 34 1 4.8942 -1.1105 -7.9155 35 1 3.2009 -1.4136 -7.4562 36 1 5.6691 -2.1279 -5.8061 37 1 4.6317 -3.2726 -6.6911 38 1 4.0401 -3.1956 -4.2781 39 1 2.6992 -2.6130 -5.2931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235097755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:21 Heat of formation + Delta-G solvation = 40.678051 kcal Electronic energy + Delta-G solvation = -20188.142804 eV Core-core repulsion = 17132.807287 eV Total energy + Delta-G solvation = -3055.335517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.53250 -40.46432 -37.62205 -36.66020 -34.74867 -33.86785 -32.25750 -31.64219 -29.53218 -26.36320 -26.19549 -24.83826 -23.84168 -23.43994 -21.45182 -20.68278 -19.19867 -19.05042 -18.59810 -17.42107 -16.56899 -16.23167 -15.92432 -15.75435 -15.34350 -15.15152 -14.68800 -14.53055 -14.40043 -14.01953 -13.60189 -13.40195 -13.21682 -12.96662 -12.88842 -12.60535 -12.33114 -12.24135 -12.01913 -11.99341 -11.73610 -11.68383 -11.55292 -11.47248 -11.35712 -11.11029 -10.74839 -9.82488 -8.26667 -6.29759 0.06514 1.10017 1.36189 1.39374 1.48743 1.78063 1.88257 2.36640 2.88105 3.08742 3.39460 3.70931 3.79878 3.89639 4.07022 4.08465 4.17457 4.19242 4.24447 4.43043 4.45568 4.61436 4.69954 4.73308 4.76862 4.84958 4.93683 5.00473 5.03626 5.13056 5.16341 5.19238 5.31795 5.37733 5.45522 5.57617 5.60891 5.69767 6.26965 6.76672 7.12545 7.34027 8.88630 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036295 B = 0.004127 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.260570 B = 6782.765069 C = 7077.066626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 H 0.112 0.888 4 C -0.004 4.004 5 C -0.516 4.516 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.252 1.252 13 C 0.227 3.773 14 N -0.510 5.510 15 C 0.343 3.657 16 N -0.442 5.442 17 C 0.060 3.940 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.111 4.111 21 C 0.059 3.941 22 N -0.439 5.439 23 O 0.058 5.942 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.012 0.988 28 H 0.031 0.969 29 H 0.267 0.733 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -3.708 -24.229 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.004 4.004 3 H 0.130 0.870 4 C -0.042 4.042 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.175 1.175 13 C 0.006 3.994 14 N -0.247 5.247 15 C -0.019 4.019 16 N -0.169 5.169 17 C -0.066 4.066 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.149 4.149 21 C -0.068 4.068 22 N -0.162 5.162 23 O 0.011 5.989 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.994 -4.050 -24.544 25.194 hybrid contribution -0.256 -0.665 0.935 1.175 sum 3.738 -4.715 -23.609 24.364 Atomic orbital electron populations 1.21737 0.90833 1.03169 1.03050 1.19944 0.98224 0.98300 0.83910 0.87006 1.19603 0.96025 0.96652 0.91963 1.21182 1.35059 1.09217 0.89923 0.92415 1.25723 0.96638 1.00030 0.95705 1.70010 1.48471 1.41041 0.98752 0.85957 0.79387 0.80934 0.78241 1.19883 1.20748 1.17532 1.29287 0.91165 0.81908 0.97018 1.71897 1.19599 1.29389 1.03819 1.24198 0.94566 0.86001 0.97098 1.58765 1.46509 1.09352 1.02248 1.22366 0.97810 0.92197 0.94193 1.21649 0.99732 0.99227 0.94244 1.21648 1.02539 0.93541 0.98147 1.21650 0.98653 1.00800 0.93776 1.22279 1.00518 0.87588 0.96395 1.74913 1.15966 1.24670 1.00671 1.85213 1.54594 1.29703 1.29437 0.91821 0.90431 0.91310 0.96947 0.95044 0.92442 0.93750 0.90176 0.90824 0.88455 0.89035 0.91502 0.90896 0.88609 0.91101 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.98 71.98 0.65 -3.59 16 2 C 0.02 0.62 2.81 -11.54 -0.03 0.59 16 3 H 0.11 4.17 8.14 -2.38 -0.02 4.15 16 4 C 0.00 -0.18 3.50 29.85 0.10 -0.08 16 5 C -0.52 -27.58 8.96 25.60 0.23 -27.35 16 6 H 0.06 3.28 7.30 -2.91 -0.02 3.26 16 7 C 0.02 0.95 5.47 84.65 0.46 1.42 16 8 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 9 Si 0.93 43.57 27.46 68.60 1.88 45.45 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.25 -11.17 6.55 99.48 0.65 -10.52 16 13 C 0.23 8.36 7.01 88.35 0.62 8.98 16 14 N -0.51 -18.83 11.29 -311.38 -3.52 -22.35 16 15 C 0.34 11.76 7.38 260.92 1.92 13.69 16 16 N -0.44 -12.12 4.73 -715.61 -3.38 -15.50 16 17 C 0.06 1.32 5.39 86.32 0.47 1.78 16 18 C -0.11 -1.59 6.09 30.65 0.19 -1.40 16 19 C -0.12 -1.41 6.00 30.67 0.18 -1.23 16 20 C -0.11 -1.61 6.09 30.64 0.19 -1.43 16 21 C 0.06 1.31 4.88 86.32 0.42 1.73 16 22 N -0.44 -15.82 11.20 -66.65 -0.75 -16.57 16 23 O 0.06 2.16 11.30 74.74 0.84 3.00 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 2.75 6.95 -2.39 -0.02 2.73 16 26 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.01 0.57 7.56 -2.39 -0.02 0.55 16 28 H 0.03 1.40 7.21 -2.38 -0.02 1.38 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.95 7.89 -2.39 -0.02 1.93 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.77 7.92 -2.39 -0.02 1.75 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -64.21 315.96 1.75 -62.45 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 0.97 Total: 6.90 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.40 Total: -6.89 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -7.35 Total: -110.91 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.84 Total: 3.00 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Total: -64.21 1.75 -62.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235097755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.132 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds