Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.46471 * 119.99643 * 2 1 3 13 13 C 1.50696 * 109.47084 * 294.99545 * 12 2 1 14 14 N 1.31052 * 126.45927 * 90.00793 * 13 12 2 15 15 C 1.35019 * 105.58651 * 179.97438 * 14 13 12 16 16 N 1.38852 * 126.38447 * 179.97438 * 15 14 13 17 17 C 1.46846 * 110.99638 * 304.21177 * 16 15 14 18 18 C 1.53041 * 109.52418 * 174.16046 * 17 16 15 19 19 C 1.53123 * 109.27819 * 59.17052 * 18 17 16 20 20 C 1.53113 * 109.16282 * 302.35216 * 19 18 17 21 21 C 1.46837 * 110.99927 * 179.97438 * 16 15 14 22 22 N 1.30628 * 107.23100 * 359.97438 * 15 14 13 23 23 O 1.21294 * 110.12465 * 359.73044 * 22 15 14 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47333 * 55.00065 * 12 2 1 29 29 H 1.09007 * 109.46773 * 175.00272 * 12 2 1 30 30 H 1.09004 * 109.46425 * 294.17144 * 17 16 15 31 31 H 1.08996 * 109.47082 * 54.14437 * 17 16 15 32 32 H 1.09006 * 109.50012 * 299.23745 * 18 17 16 33 33 H 1.08991 * 109.50620 * 179.11836 * 18 17 16 34 34 H 1.08995 * 109.52227 * 182.44334 * 19 18 17 35 35 H 1.09004 * 109.57088 * 62.28927 * 19 18 17 36 36 H 1.09003 * 109.50635 * 297.70838 * 20 19 18 37 37 H 1.09007 * 109.50660 * 177.59411 * 20 19 18 38 38 H 1.08997 * 109.46720 * 305.85023 * 21 16 15 39 39 H 1.08998 * 109.46422 * 65.83815 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0399 -0.7212 1.2494 13 6 1.6412 0.0572 2.4766 14 7 0.5346 -0.0855 3.1639 15 6 0.6122 0.8146 4.1674 16 7 -0.3386 1.0297 5.1561 17 6 -1.6491 1.3354 4.5683 18 6 -2.6996 1.4224 5.6779 19 6 -2.2968 2.5164 6.6707 20 6 -0.9080 2.1993 7.2318 21 6 0.0908 2.0894 6.0774 22 7 1.7484 1.4451 4.0346 23 8 2.3526 1.0186 3.0732 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 1.6053 -1.7197 1.2953 29 1 3.1263 -0.7994 1.2058 30 1 -1.5976 2.2883 4.0415 31 1 -1.9256 0.5477 3.8675 32 1 -2.7615 0.4655 6.1962 33 1 -3.6692 1.6647 5.2429 34 1 -3.0195 2.5525 7.4858 35 1 -2.2730 3.4802 6.1621 36 1 -0.9416 1.2546 7.7746 37 1 -0.5974 2.9967 7.9070 38 1 1.0779 1.8492 6.4726 39 1 0.1344 3.0389 5.5439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235402860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = 58.899444 kcal Electronic energy + Delta-G solvation = -20323.897230 eV Core-core repulsion = 17269.351852 eV Total energy + Delta-G solvation = -3054.545378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.95864 -39.37138 -35.82469 -35.15485 -33.30373 -31.78378 -31.20354 -30.22934 -26.62861 -25.26243 -25.08235 -23.65042 -22.58621 -21.52387 -20.10679 -19.51890 -17.63932 -17.39491 -16.32801 -16.04583 -15.11882 -14.85234 -14.64178 -14.35299 -14.07953 -13.72707 -13.50732 -13.09783 -12.68779 -12.44396 -12.22771 -11.71285 -11.51123 -11.40686 -11.24592 -11.01494 -10.89903 -10.77705 -10.69689 -10.63576 -10.44055 -10.19043 -10.12606 -9.89055 -9.32881 -8.93725 -8.50444 -8.41188 -6.06226 -4.14562 1.66268 2.61843 3.18389 3.27250 3.35419 3.38327 3.48456 4.34703 4.41233 4.50407 4.67116 4.69479 4.89028 5.02451 5.15058 5.25605 5.34593 5.39145 5.53189 5.63649 5.68618 5.72002 5.86896 5.87905 5.99548 6.06353 6.12747 6.20722 6.38392 6.54313 6.68073 6.90937 7.01038 7.12487 7.24541 7.63374 7.83981 8.04737 8.29510 8.70054 8.88187 9.51184 10.99979 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.004054 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.472066 B = 6905.537501 C = 7299.586432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.027 4.027 13 C 0.229 3.771 14 N -0.493 5.493 15 C 0.342 3.658 16 N -0.436 5.436 17 C 0.062 3.938 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.116 4.116 21 C 0.061 3.939 22 N -0.432 5.432 23 O 0.061 5.939 24 H 0.030 0.970 25 H 0.009 0.991 26 H 0.082 0.918 27 H 0.261 0.739 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 2.118 15.787 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.555 4.555 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.066 4.066 13 C 0.010 3.990 14 N -0.229 5.229 15 C -0.020 4.020 16 N -0.162 5.162 17 C -0.065 4.065 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.066 4.066 22 N -0.154 5.154 23 O 0.011 5.989 24 H 0.049 0.951 25 H 0.028 0.972 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.793 2.251 16.542 17.369 hybrid contribution 0.407 0.196 -1.347 1.420 sum -4.386 2.446 15.196 16.004 Atomic orbital electron populations 1.21812 0.97889 0.99522 1.00151 1.18736 0.93471 0.95933 0.88854 0.95062 1.21069 1.31789 1.12630 0.89970 0.92035 1.24949 0.94895 0.94910 0.99106 1.69907 1.36435 1.22754 1.23442 0.86483 0.78655 0.79652 0.82891 1.19623 1.21013 1.21020 1.20853 1.02349 0.97473 0.85922 1.29406 0.85190 0.88400 0.96032 1.71932 1.21609 1.22901 1.06485 1.23794 0.92716 0.92370 0.93106 1.58572 1.00915 1.43868 1.12803 1.22242 0.85956 1.01355 0.96956 1.21623 0.97528 0.99973 0.96241 1.21638 0.96827 0.98756 0.99033 1.21621 0.94426 1.02547 0.96785 1.22133 0.99533 0.91795 0.93177 1.74888 1.11112 1.21940 1.07411 1.85225 1.41759 1.42298 1.29634 0.95088 0.97231 0.89974 0.92925 0.88262 0.89055 0.93785 0.88695 0.90617 0.90631 0.91350 0.91982 0.90755 0.90795 0.89742 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.79 37.16 0.33 -2.93 16 2 C 0.05 1.18 2.29 -91.77 -0.21 0.97 16 3 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.52 -13.34 8.56 -34.44 -0.29 -13.64 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 7 N -0.89 -24.76 11.33 55.43 0.63 -24.13 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 13 C 0.23 4.48 6.96 -12.99 -0.09 4.39 16 14 N -0.49 -9.73 10.62 -12.67 -0.13 -9.86 16 15 C 0.34 6.29 7.37 -321.18 -2.37 3.92 16 16 N -0.44 -6.62 4.72 -176.68 -0.83 -7.45 16 17 C 0.06 0.83 5.39 -3.83 -0.02 0.81 16 18 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 19 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 20 C -0.12 -1.07 6.09 -26.65 -0.16 -1.24 16 21 C 0.06 0.77 4.88 -3.84 -0.02 0.75 16 22 N -0.43 -8.23 11.20 28.63 0.32 -7.91 16 23 O 0.06 1.18 11.29 18.09 0.20 1.39 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.01 0.20 6.84 -51.93 -0.36 -0.15 16 26 H 0.08 2.18 6.08 -51.93 -0.32 1.86 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.40 7.89 -51.93 -0.41 1.00 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -28.70 315.51 -9.59 -38.29 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.11 Total: -1.99 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.40 Total: -8.57 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.02 Total: -49.36 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.70 -9.59 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235402860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.191 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds