Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47054 * 2 1 4 4 C 1.53004 * 109.46946 * 240.00126 * 2 1 3 5 5 C 1.50696 * 109.46878 * 65.00351 * 4 2 1 6 6 H 1.07994 * 120.00459 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99878 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00121 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47247 * 359.97438 * 9 7 5 11 11 H 1.48511 * 109.47210 * 119.99891 * 9 7 5 12 12 H 1.48494 * 109.47371 * 239.99701 * 9 7 5 13 13 C 1.50703 * 109.47157 * 120.00389 * 2 1 3 14 14 N 1.31039 * 126.45763 * 239.99958 * 13 2 1 15 15 C 1.35024 * 105.58722 * 179.97438 * 14 13 2 16 16 N 1.38845 * 126.38633 * 179.73782 * 15 14 13 17 17 C 1.46844 * 110.99804 * 304.20766 * 16 15 14 18 18 C 1.53041 * 109.52529 * 174.16269 * 17 16 15 19 19 C 1.53114 * 109.27620 * 59.17525 * 18 17 16 20 20 C 1.53115 * 109.16346 * 302.34772 * 19 18 17 21 21 C 1.46849 * 110.99999 * 179.97438 * 16 15 14 22 22 N 1.30631 * 107.22658 * 359.97438 * 15 14 13 23 23 O 1.21297 * 110.12593 * 359.97438 * 22 15 14 24 24 H 1.09003 * 109.47190 * 300.00039 * 1 2 3 25 25 H 1.09002 * 109.47489 * 59.99572 * 1 2 3 26 26 H 1.08997 * 109.47707 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 185.00123 * 4 2 1 28 28 H 1.08998 * 109.47215 * 305.00462 * 4 2 1 29 29 H 0.97001 * 119.99820 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46509 * 294.17646 * 17 16 15 31 31 H 1.09000 * 109.46751 * 54.14469 * 17 16 15 32 32 H 1.09004 * 109.49768 * 299.23720 * 18 17 16 33 33 H 1.08993 * 109.50454 * 179.11989 * 18 17 16 34 34 H 1.09003 * 109.52107 * 182.44258 * 19 18 17 35 35 H 1.09000 * 109.57651 * 62.28876 * 19 18 17 36 36 H 1.08999 * 109.50614 * 297.71390 * 20 19 18 37 37 H 1.09007 * 109.53759 * 177.61679 * 20 19 18 38 38 H 1.08997 * 109.45838 * 305.85391 * 21 16 15 39 39 H 1.09004 * 109.46073 * 65.83320 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7283 8 7 2.6753 -1.5192 -3.8512 9 14 1.4975 0.5624 -5.2497 10 1 0.7403 1.7734 -4.8435 11 1 2.7154 0.9670 -5.9971 12 1 0.6432 -0.2868 -6.1180 13 6 2.0323 -0.7105 1.2304 14 7 2.7887 -0.1994 2.1705 15 6 2.9820 -1.1948 3.0620 16 7 3.7293 -1.1211 4.2299 17 6 5.1039 -0.6879 3.9485 18 6 5.8538 -0.4779 5.2659 19 6 5.8636 -1.7891 6.0566 20 6 4.4209 -2.2434 6.2944 21 6 3.7121 -2.4022 4.9475 22 7 2.3391 -2.2418 2.6182 23 8 1.7887 -1.9801 1.5695 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1262 -0.7995 -1.2056 28 1 1.6052 -1.7197 -1.2953 29 1 2.9226 -1.8421 -4.7319 30 1 5.6119 -1.4514 3.3592 31 1 5.0828 0.2476 3.3895 32 1 5.3543 0.2954 5.8497 33 1 6.8786 -0.1715 5.0565 34 1 6.3590 -1.6328 7.0149 35 1 6.3975 -2.5527 5.4908 36 1 3.8988 -1.4980 6.8943 37 1 4.4214 -3.1983 6.8201 38 1 2.6803 -2.7113 5.1138 39 1 4.2266 -3.1579 4.3538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235413946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = 54.562026 kcal Electronic energy + Delta-G solvation = -20143.698008 eV Core-core repulsion = 17088.964545 eV Total energy + Delta-G solvation = -3054.733463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.99175 -39.40507 -35.87810 -35.29495 -33.20389 -32.16947 -31.24788 -30.18016 -27.13573 -25.20392 -24.73625 -23.57555 -22.63257 -22.08907 -20.29459 -19.51606 -17.54348 -17.30268 -16.56798 -16.05407 -15.17275 -14.88366 -14.57436 -14.47036 -14.21634 -13.76747 -13.56253 -13.30686 -12.62667 -12.48653 -12.11812 -11.95367 -11.59931 -11.47223 -11.38549 -11.01093 -10.97425 -10.91473 -10.80662 -10.72011 -10.55788 -10.46548 -10.24816 -9.99913 -9.38298 -9.23893 -8.53297 -8.45497 -6.09231 -4.13062 1.63614 2.56502 3.14307 3.27736 3.35522 3.38478 3.45191 4.30169 4.41265 4.47375 4.63554 4.67199 4.83882 4.99287 5.11827 5.27376 5.31055 5.36349 5.49508 5.59363 5.65178 5.67549 5.73770 5.80131 5.85062 5.86288 5.96717 6.09354 6.20623 6.29814 6.54762 6.63568 6.68521 6.83604 6.97920 7.47619 7.56172 7.86538 8.22573 8.66679 8.91612 9.51518 11.02142 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037256 B = 0.003862 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.374905 B = 7248.435726 C = 7489.963651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.106 0.894 4 C 0.029 3.971 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.232 3.768 14 N -0.503 5.503 15 C 0.340 3.660 16 N -0.436 5.436 17 C 0.061 3.939 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.116 4.116 21 C 0.060 3.940 22 N -0.429 5.429 23 O 0.070 5.930 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 0.150 17.187 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.124 0.876 4 C -0.009 4.009 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.012 3.988 14 N -0.239 5.239 15 C -0.021 4.021 16 N -0.162 5.162 17 C -0.065 4.065 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.067 4.067 22 N -0.150 5.150 23 O 0.020 5.980 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.527 -0.066 17.972 18.315 hybrid contribution 0.111 -0.097 -1.416 1.424 sum 3.638 -0.162 16.556 16.952 Atomic orbital electron populations 1.21777 0.92965 1.02566 1.01980 1.20368 0.96586 0.98879 0.86345 0.87600 1.19246 0.96810 0.96100 0.88752 1.21097 1.35772 1.08658 0.90298 0.91855 1.25006 0.94979 0.95025 0.99246 1.69978 1.38323 1.21015 1.23686 0.86487 0.78315 0.80037 0.82886 1.19547 1.21011 1.20973 1.29454 0.90732 0.81836 0.96750 1.71894 1.19794 1.28430 1.03772 1.23757 0.99372 0.85991 0.92987 1.58565 1.13085 1.30528 1.14009 1.22244 0.84573 1.01708 0.98013 1.21620 1.00055 0.98239 0.95435 1.21637 0.96656 0.97467 1.00501 1.21620 0.95695 1.02117 0.95952 1.22144 1.02311 0.87609 0.94611 1.74919 1.18447 1.21857 0.99773 1.85235 1.55026 1.29832 1.27918 0.94023 0.89637 0.92296 0.96050 0.95242 0.92852 0.93777 0.88806 0.90602 0.90637 0.91323 0.91962 0.90745 0.90742 0.89686 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.98 37.16 0.33 -2.00 16 2 C 0.00 -0.03 2.81 -91.77 -0.26 -0.28 16 3 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 4 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 5 C -0.52 -13.59 8.41 -34.44 -0.29 -13.88 16 6 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.23 4.62 7.01 -12.99 -0.09 4.52 16 14 N -0.50 -9.90 11.30 -12.67 -0.14 -10.05 16 15 C 0.34 6.27 7.37 -321.18 -2.37 3.90 16 16 N -0.44 -6.54 4.72 -176.67 -0.83 -7.38 16 17 C 0.06 0.80 5.39 -3.83 -0.02 0.78 16 18 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 19 C -0.13 -1.04 6.00 -26.61 -0.16 -1.20 16 20 C -0.12 -1.06 6.09 -26.66 -0.16 -1.22 16 21 C 0.06 0.76 4.88 -3.84 -0.02 0.74 16 22 N -0.43 -8.32 11.21 28.63 0.32 -8.00 16 23 O 0.07 1.41 11.30 18.09 0.20 1.62 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.32 7.89 -51.93 -0.41 0.91 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -29.61 319.57 -9.52 -39.13 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.18 Total: -2.92 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.42 Total: -7.79 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.08 Total: -50.52 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.61 -9.52 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235413946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.691 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds