Wall clock time and date at job start Mon Mar 30 2020 07:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48506 * 109.46944 * 264.85858 * 3 2 1 5 5 H 1.48494 * 109.47387 * 24.85728 * 3 2 1 6 6 H 1.48505 * 109.47031 * 144.85951 * 3 2 1 7 7 C 1.37874 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00437 * 359.12046 * 7 2 1 9 9 C 1.50702 * 119.99797 * 179.12754 * 7 2 1 10 10 H 1.08994 * 110.88954 * 329.15811 * 9 7 2 11 11 C 1.55409 * 111.06995 * 92.94062 * 9 7 2 12 12 C 1.54323 * 102.82593 * 153.48673 * 11 9 7 13 13 N 1.47022 * 107.40411 * 337.97502 * 12 11 9 14 14 C 1.34784 * 125.64900 * 178.82662 * 13 12 11 15 15 O 1.21279 * 119.99800 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99746 * 0.03035 * 14 13 12 17 17 C 1.52998 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47172 * 294.99685 * 17 16 14 19 19 C 1.52998 * 109.47698 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.46902 * 59.99988 * 19 18 17 21 21 C 1.53002 * 109.46965 * 299.99910 * 20 19 18 22 22 C 1.53003 * 109.47108 * 174.99869 * 17 16 14 23 23 C 1.47424 * 108.70129 * 358.86534 * 13 12 11 24 24 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.69566 * 35.20271 * 11 9 7 26 26 H 1.08998 * 110.85409 * 271.84712 * 11 9 7 27 27 H 1.09003 * 109.88120 * 218.48068 * 12 11 9 28 28 H 1.08996 * 109.88323 * 97.47451 * 12 11 9 29 29 H 1.09000 * 109.47542 * 299.99461 * 16 14 13 30 30 H 1.09003 * 109.47700 * 59.99768 * 16 14 13 31 31 H 1.08996 * 109.47700 * 54.99373 * 17 16 14 32 32 H 1.09002 * 109.47368 * 300.00113 * 18 17 16 33 33 H 1.09000 * 109.47141 * 59.99462 * 18 17 16 34 34 H 1.09002 * 109.46747 * 300.00424 * 19 18 17 35 35 H 1.08996 * 109.47469 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46923 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47516 * 60.00203 * 20 19 18 38 38 H 1.08992 * 109.47693 * 300.00185 * 21 20 19 39 39 H 1.08999 * 109.47066 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47066 * 299.99739 * 22 17 16 41 41 H 1.09002 * 109.47064 * 60.00112 * 22 17 16 42 42 H 1.09003 * 110.36447 * 142.97285 * 23 13 12 43 43 H 1.08995 * 110.36748 * 265.17634 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6053 1.9837 -1.3945 5 1 1.3965 2.6816 0.5885 6 1 3.4882 1.4740 0.8059 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 0.0134 9 6 3.5114 -1.1941 -0.0204 10 1 3.8931 -0.3235 -0.5538 11 6 4.0892 -1.2581 1.4209 12 6 5.4661 -1.9219 1.2088 13 7 5.4085 -2.6575 -0.0628 14 6 6.4222 -3.3542 -0.6140 15 8 6.2611 -3.9246 -1.6721 16 6 7.7555 -3.4244 0.0847 17 6 8.7224 -4.2709 -0.7457 18 6 8.2181 -5.7143 -0.8013 19 6 9.1852 -6.5610 -1.6312 20 6 10.5724 -6.5299 -0.9864 21 6 11.0768 -5.0865 -0.9310 22 6 10.1098 -4.2399 -0.1015 23 6 4.0586 -2.5062 -0.6357 24 1 -0.4849 0.8401 -0.0004 25 1 3.4586 -1.8744 2.0616 26 1 4.2036 -0.2575 1.8379 27 1 5.6751 -2.6114 2.0268 28 1 6.2423 -1.1583 1.1605 29 1 8.1592 -2.4185 0.1993 30 1 7.6275 -3.8786 1.0673 31 1 8.7821 -3.8678 -1.7567 32 1 8.1584 -6.1176 0.2096 33 1 7.2296 -5.7364 -1.2601 34 1 9.2453 -6.1578 -2.6422 35 1 8.8262 -7.5893 -1.6704 36 1 11.2615 -7.1327 -1.5779 37 1 10.5124 -6.9329 0.0245 38 1 11.1369 -4.6834 -1.9419 39 1 12.0648 -5.0643 -0.4712 40 1 10.4691 -3.2116 -0.0620 41 1 10.0502 -4.6431 0.9094 42 1 4.1144 -2.4219 -1.7211 43 1 3.4298 -3.3506 -0.3535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260221726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:31 Heat of formation + Delta-G solvation = -72.564638 kcal Electronic energy + Delta-G solvation = -20520.404640 eV Core-core repulsion = 17563.698894 eV Total energy + Delta-G solvation = -2956.705745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.90654 -38.37013 -36.76166 -33.05213 -32.62424 -30.90563 -30.76195 -28.65269 -27.34319 -24.77426 -22.69576 -22.46172 -21.42575 -19.80841 -19.62139 -18.65890 -17.20991 -16.65628 -15.60836 -15.35968 -15.16129 -14.45302 -14.30711 -14.12268 -13.77640 -13.70920 -13.06739 -12.68143 -12.45105 -12.26315 -12.21620 -12.03330 -11.97552 -11.59006 -11.45680 -11.16984 -11.04657 -10.98511 -10.68688 -10.49630 -10.29295 -10.24227 -10.08320 -9.93863 -9.78949 -9.26119 -9.20692 -8.63076 -8.10428 -6.17068 -4.17792 3.00466 3.22540 3.30937 3.31551 3.47657 4.33328 4.58003 4.62912 4.65682 4.89201 5.05270 5.09988 5.18417 5.27999 5.37826 5.42643 5.43265 5.48437 5.52700 5.58236 5.65087 5.71234 5.82030 5.82513 5.93947 6.01783 6.04759 6.08714 6.13969 6.16345 6.22934 6.43222 6.47352 6.51683 6.59391 6.70630 6.78168 6.98637 7.22325 7.62243 8.04036 8.41504 8.57877 8.87072 9.44429 10.95614 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045257 B = 0.003795 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.544411 B = 7376.331756 C = 7634.995425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.077 0.923 9 C 0.012 3.988 10 H 0.041 0.959 11 C -0.137 4.137 12 C 0.099 3.901 13 N -0.617 5.617 14 C 0.521 3.479 15 O -0.549 6.549 16 C -0.133 4.133 17 C -0.070 4.070 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.115 4.115 23 C 0.115 3.885 24 H 0.266 0.734 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.317 -7.371 2.445 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.095 0.905 9 C -0.008 4.008 10 H 0.059 0.941 11 C -0.175 4.175 12 C -0.024 4.024 13 N -0.350 5.350 14 C 0.310 3.690 15 O -0.428 6.428 16 C -0.173 4.173 17 C -0.089 4.089 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.006 4.006 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.111 -7.596 1.860 21.578 hybrid contribution 0.334 1.049 0.195 1.118 sum 20.445 -6.548 2.055 21.566 Atomic orbital electron populations 1.69892 1.06331 1.27203 1.49848 1.25037 0.94712 0.99073 0.94077 0.86864 0.80194 0.83525 0.78839 1.20173 1.21452 1.18842 1.20813 0.87798 0.94771 1.51433 0.90502 1.20297 0.96871 0.92679 0.90914 0.94110 1.23105 0.92898 0.99815 1.01716 1.22109 1.00131 0.94878 0.85311 1.48788 1.13061 1.49945 1.23215 1.20272 0.85118 0.78315 0.85340 1.90632 1.83297 1.45907 1.22933 1.21725 0.93217 1.02074 1.00294 1.20899 0.92864 0.95632 0.99462 1.21709 1.00429 0.93816 0.99803 1.21502 0.94769 0.99696 0.99503 1.21555 0.96882 0.96508 1.00776 1.21501 0.98144 0.95520 1.00390 1.21597 0.94726 0.99732 0.99186 1.22459 0.80172 0.99751 0.98248 0.92444 0.90684 0.91480 0.92484 0.92549 0.89369 0.89364 0.90482 0.92877 0.89737 0.92041 0.92361 0.92472 0.92235 0.92035 0.92306 0.92105 0.92033 0.91557 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.62 26.82 -169.99 -4.56 16.06 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -5.77 6.10 56.52 0.34 -5.42 16 7 C -0.51 -13.65 8.98 -34.44 -0.31 -13.96 16 8 H 0.08 2.24 8.00 -52.49 -0.42 1.82 16 9 C 0.01 0.27 2.39 -89.49 -0.21 0.06 16 10 H 0.04 0.93 6.01 -51.93 -0.31 0.62 16 11 C -0.14 -2.58 6.30 -24.76 -0.16 -2.73 16 12 C 0.10 1.54 6.48 -3.06 -0.02 1.52 16 13 N -0.62 -11.06 3.33 -170.52 -0.57 -11.63 16 14 C 0.52 8.86 7.57 -10.98 -0.08 8.77 16 15 O -0.55 -10.99 14.22 5.56 0.08 -10.92 16 16 C -0.13 -1.64 4.37 -27.89 -0.12 -1.76 16 17 C -0.07 -0.81 1.84 -90.62 -0.17 -0.98 16 18 C -0.12 -1.46 4.94 -26.73 -0.13 -1.60 16 19 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 20 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 21 C -0.12 -1.01 5.92 -26.75 -0.16 -1.17 16 22 C -0.11 -1.06 5.20 -26.75 -0.14 -1.19 16 23 C 0.12 2.40 6.37 -2.53 -0.02 2.39 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 26 H 0.07 1.23 7.15 -51.93 -0.37 0.86 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.03 7.95 -51.93 -0.41 0.61 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.28 5.95 -51.93 -0.31 0.98 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 43 H 0.06 1.37 7.99 -51.93 -0.41 0.95 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -29.71 329.58 -9.00 -38.71 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.76 Total: -0.14 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.93 Total: -11.32 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.21 Total: -37.36 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.56 Total: 16.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.71 -9.00 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260221726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.851 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds