Wall clock time and date at job start Mon Mar 30 2020 07:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48506 * 109.46944 * 264.85858 * 3 2 1 5 5 H 1.48494 * 109.47387 * 24.85728 * 3 2 1 6 6 H 1.48505 * 109.47031 * 144.85951 * 3 2 1 7 7 C 1.37874 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00437 * 359.12046 * 7 2 1 9 9 C 1.50702 * 119.99797 * 179.12754 * 7 2 1 10 10 H 1.08994 * 110.88954 * 329.15811 * 9 7 2 11 11 C 1.55409 * 111.06995 * 92.94062 * 9 7 2 12 12 C 1.54323 * 102.82593 * 153.48673 * 11 9 7 13 13 N 1.47022 * 107.40411 * 337.97502 * 12 11 9 14 14 C 1.34784 * 125.64900 * 178.82662 * 13 12 11 15 15 O 1.21279 * 119.99800 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99746 * 0.03035 * 14 13 12 17 17 C 1.52998 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47172 * 294.99685 * 17 16 14 19 19 C 1.52998 * 109.47698 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.46902 * 59.99988 * 19 18 17 21 21 C 1.53002 * 109.46965 * 299.99910 * 20 19 18 22 22 C 1.53003 * 109.47108 * 174.99869 * 17 16 14 23 23 C 1.47424 * 108.70129 * 358.86534 * 13 12 11 24 24 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.69566 * 35.20271 * 11 9 7 26 26 H 1.08998 * 110.85409 * 271.84712 * 11 9 7 27 27 H 1.09003 * 109.88120 * 218.48068 * 12 11 9 28 28 H 1.08996 * 109.88323 * 97.47451 * 12 11 9 29 29 H 1.09000 * 109.47542 * 299.99461 * 16 14 13 30 30 H 1.09003 * 109.47700 * 59.99768 * 16 14 13 31 31 H 1.08996 * 109.47700 * 54.99373 * 17 16 14 32 32 H 1.09002 * 109.47368 * 300.00113 * 18 17 16 33 33 H 1.09000 * 109.47141 * 59.99462 * 18 17 16 34 34 H 1.09002 * 109.46747 * 300.00424 * 19 18 17 35 35 H 1.08996 * 109.47469 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46923 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47516 * 60.00203 * 20 19 18 38 38 H 1.08992 * 109.47693 * 300.00185 * 21 20 19 39 39 H 1.08999 * 109.47066 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47066 * 299.99739 * 22 17 16 41 41 H 1.09002 * 109.47064 * 60.00112 * 22 17 16 42 42 H 1.09003 * 110.36447 * 142.97285 * 23 13 12 43 43 H 1.08995 * 110.36748 * 265.17634 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6053 1.9837 -1.3945 5 1 1.3965 2.6816 0.5885 6 1 3.4882 1.4740 0.8059 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 0.0134 9 6 3.5114 -1.1941 -0.0204 10 1 3.8931 -0.3235 -0.5538 11 6 4.0892 -1.2581 1.4209 12 6 5.4661 -1.9219 1.2088 13 7 5.4085 -2.6575 -0.0628 14 6 6.4222 -3.3542 -0.6140 15 8 6.2611 -3.9246 -1.6721 16 6 7.7555 -3.4244 0.0847 17 6 8.7224 -4.2709 -0.7457 18 6 8.2181 -5.7143 -0.8013 19 6 9.1852 -6.5610 -1.6312 20 6 10.5724 -6.5299 -0.9864 21 6 11.0768 -5.0865 -0.9310 22 6 10.1098 -4.2399 -0.1015 23 6 4.0586 -2.5062 -0.6357 24 1 -0.4849 0.8401 -0.0004 25 1 3.4586 -1.8744 2.0616 26 1 4.2036 -0.2575 1.8379 27 1 5.6751 -2.6114 2.0268 28 1 6.2423 -1.1583 1.1605 29 1 8.1592 -2.4185 0.1993 30 1 7.6275 -3.8786 1.0673 31 1 8.7821 -3.8678 -1.7567 32 1 8.1584 -6.1176 0.2096 33 1 7.2296 -5.7364 -1.2601 34 1 9.2453 -6.1578 -2.6422 35 1 8.8262 -7.5893 -1.6704 36 1 11.2615 -7.1327 -1.5779 37 1 10.5124 -6.9329 0.0245 38 1 11.1369 -4.6834 -1.9419 39 1 12.0648 -5.0643 -0.4712 40 1 10.4691 -3.2116 -0.0620 41 1 10.0502 -4.6431 0.9094 42 1 4.1144 -2.4219 -1.7211 43 1 3.4298 -3.3506 -0.3535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260221726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:31 Heat of formation + Delta-G solvation = -89.395790 kcal Electronic energy + Delta-G solvation = -20521.134493 eV Core-core repulsion = 17563.698894 eV Total energy + Delta-G solvation = -2957.435599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18202 -39.42348 -38.16430 -34.94687 -33.68071 -32.53984 -31.54480 -30.15538 -28.53945 -26.46299 -23.92593 -23.44036 -22.38255 -21.38250 -20.59011 -20.00282 -19.15467 -17.98524 -16.97277 -16.49458 -16.34572 -16.05682 -15.53824 -15.03043 -14.90440 -14.75793 -14.64555 -14.28367 -13.85402 -13.57334 -13.31546 -13.19028 -12.98740 -12.87854 -12.74797 -12.46662 -12.41187 -11.97506 -11.94255 -11.82091 -11.71949 -11.56541 -11.29556 -11.20717 -11.17660 -10.87818 -10.70830 -10.50407 -9.54695 -8.30118 -6.35840 1.37852 1.38818 1.50084 1.70070 2.12613 2.35594 3.02889 3.61314 3.75601 3.86481 3.95209 3.99748 4.19811 4.27278 4.29385 4.36473 4.42894 4.52248 4.56773 4.63632 4.67106 4.70369 4.73190 4.80982 4.86381 4.90183 4.97352 5.07674 5.13270 5.23066 5.26846 5.30078 5.33152 5.35937 5.37894 5.45281 5.51044 5.58728 5.65406 5.66168 6.27684 6.68420 6.71058 7.23705 7.29906 8.86474 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045257 B = 0.003795 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.544411 B = 7376.331756 C = 7634.995425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.229 1.229 7 C -0.515 4.515 8 H 0.031 0.969 9 C 0.007 3.993 10 H 0.043 0.957 11 C -0.132 4.132 12 C 0.103 3.897 13 N -0.621 5.621 14 C 0.513 3.487 15 O -0.588 6.588 16 C -0.122 4.122 17 C -0.068 4.068 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.108 4.108 23 C 0.122 3.878 24 H 0.267 0.733 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.372 -6.361 4.442 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.152 1.152 7 C -0.553 4.553 8 H 0.049 0.951 9 C -0.012 4.012 10 H 0.061 0.939 11 C -0.170 4.170 12 C -0.018 4.018 13 N -0.354 5.354 14 C 0.305 3.695 15 O -0.470 6.470 16 C -0.162 4.162 17 C -0.087 4.087 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.001 4.001 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 24.206 -6.602 3.881 25.389 hybrid contribution -1.016 0.589 -0.500 1.276 sum 23.190 -6.013 3.382 24.194 Atomic orbital electron populations 1.70054 1.08457 1.28302 1.52050 1.25963 0.95473 1.03286 0.93764 0.85794 0.79966 0.78084 0.79318 1.20057 1.21402 1.15158 1.21039 0.90474 0.93096 1.50689 0.95072 1.20211 0.93871 0.93218 0.93932 0.93879 1.22952 0.94623 1.00998 0.98430 1.22242 0.98657 0.96048 0.84877 1.48872 1.11774 1.50716 1.24083 1.21266 0.86298 0.76971 0.84990 1.90628 1.84076 1.47278 1.24983 1.21793 0.89858 1.03942 1.00581 1.20885 0.94547 0.94710 0.98579 1.21656 0.98856 0.95037 1.00184 1.21497 0.95917 0.99320 0.98795 1.21535 0.95499 0.97163 1.01136 1.21527 0.98953 0.95004 1.00181 1.21563 0.92680 1.00825 0.99503 1.22071 0.82306 0.98535 0.97212 0.92397 0.91694 0.90083 0.89186 0.89180 0.86719 0.86870 0.92850 0.91781 0.93585 0.93369 0.92277 0.91520 0.91378 0.92796 0.90439 0.90768 0.90651 0.93509 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.95 42.00 26.82 68.60 1.84 43.84 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.23 -8.81 6.10 99.48 0.61 -8.20 16 7 C -0.51 -28.55 8.98 25.60 0.23 -28.32 16 8 H 0.03 1.95 8.00 -2.91 -0.02 1.92 16 9 C 0.01 0.33 2.39 -10.06 -0.02 0.30 16 10 H 0.04 1.89 6.01 -2.39 -0.01 1.88 16 11 C -0.13 -4.62 6.30 31.87 0.20 -4.42 16 12 C 0.10 2.78 6.48 86.73 0.56 3.34 16 13 N -0.62 -21.19 3.33 -811.80 -2.70 -23.89 16 14 C 0.51 16.73 7.57 87.65 0.66 17.40 16 15 O -0.59 -24.05 14.22 -3.02 -0.04 -24.09 16 16 C -0.12 -2.57 4.37 29.85 0.13 -2.44 16 17 C -0.07 -1.44 1.84 -10.79 -0.02 -1.46 16 18 C -0.12 -2.81 4.94 30.59 0.15 -2.66 16 19 C -0.12 -2.38 5.92 30.59 0.18 -2.20 16 20 C -0.12 -1.74 5.92 30.60 0.18 -1.56 16 21 C -0.12 -1.67 5.92 30.58 0.18 -1.49 16 22 C -0.11 -1.56 5.20 30.58 0.16 -1.40 16 23 C 0.12 5.19 6.37 86.85 0.55 5.74 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 26 H 0.08 2.62 7.15 -2.39 -0.02 2.61 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.38 7.95 -2.39 -0.02 1.36 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.44 5.95 -2.39 -0.01 1.42 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 2.12 8.04 -2.39 -0.02 2.11 16 43 H 0.04 2.03 7.99 -2.39 -0.02 2.01 16 Total: -1.00 -69.21 329.58 3.86 -65.35 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.85 Total: 14.81 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 3.61 Total: -17.98 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -2.40 Total: -81.92 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.84 Total: 43.84 kcal Total: -69.21 3.86 -65.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260221726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.049 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds