Wall clock time and date at job start Mon Mar 30 2020 08:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 119.99973 * 2 1 4 4 C 1.50701 * 109.46776 * 270.00234 * 3 2 1 5 5 H 1.07997 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99642 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99979 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00241 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46844 * 59.99839 * 8 6 4 10 10 H 1.48497 * 109.47277 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47038 * 299.99806 * 8 6 4 12 12 C 1.34780 * 119.99859 * 180.02562 * 2 1 3 13 13 O 1.21616 * 119.99618 * 180.02562 * 12 2 1 14 14 C 1.47102 * 120.00126 * 359.97438 * 12 2 1 15 15 C 1.32992 * 119.99852 * 172.97349 * 14 12 2 16 16 C 1.51271 * 120.84253 * 347.83023 * 15 14 12 17 17 C 1.53225 * 108.53358 * 231.32543 * 16 15 14 18 18 C 1.52959 * 109.41753 * 305.38959 * 17 16 15 19 19 C 1.53001 * 109.41460 * 183.70088 * 18 17 16 20 20 C 1.53000 * 109.40952 * 303.48860 * 18 17 16 21 21 C 1.52963 * 109.81667 * 63.59300 * 18 17 16 22 22 C 1.51263 * 120.84676 * 167.82744 * 15 14 12 23 23 H 1.08995 * 109.47155 * 269.99988 * 1 2 3 24 24 H 1.09001 * 109.46792 * 29.99997 * 1 2 3 25 25 H 1.08997 * 109.47137 * 149.99557 * 1 2 3 26 26 H 1.09000 * 109.47012 * 29.99972 * 3 2 1 27 27 H 1.08994 * 109.47213 * 150.00318 * 3 2 1 28 28 H 0.96999 * 120.00103 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.99836 * 352.97846 * 14 12 2 30 30 H 1.08994 * 109.61697 * 111.61041 * 16 15 14 31 31 H 1.09007 * 109.63175 * 351.04040 * 16 15 14 32 32 H 1.09002 * 109.47995 * 185.40202 * 17 16 15 33 33 H 1.09006 * 109.48625 * 65.37931 * 17 16 15 34 34 H 1.08993 * 109.47435 * 59.99889 * 19 18 17 35 35 H 1.09001 * 109.46556 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.46786 * 299.99872 * 19 18 17 37 37 H 1.09001 * 109.47144 * 60.00079 * 20 18 17 38 38 H 1.09000 * 109.46688 * 179.97438 * 20 18 17 39 39 H 1.09000 * 109.47074 * 299.99265 * 20 18 17 40 40 H 1.08995 * 109.48063 * 56.37972 * 21 18 17 41 41 H 1.08995 * 109.47935 * 176.40902 * 21 18 17 42 42 H 1.09001 * 109.63043 * 8.94582 * 22 15 14 43 43 H 1.08997 * 109.62946 * 248.37734 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4388 3.4164 -3.4339 9 1 2.1414 3.5943 -4.1342 10 1 4.1812 4.7025 -3.4339 11 1 4.2412 2.3812 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3551 -1.1672 -0.0001 14 6 1.4034 -2.4412 -0.0005 15 6 2.0609 -3.5886 -0.1419 16 6 3.5105 -3.6036 -0.5740 17 6 3.6563 -4.5672 -1.7564 18 6 3.1002 -5.9379 -1.3668 19 6 3.3292 -6.9243 -2.5138 20 6 3.8198 -6.4411 -0.1139 21 6 1.6013 -5.8277 -1.0826 22 6 1.3782 -4.9117 0.1253 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1384 0.5138 28 1 4.0311 4.4435 -0.8504 29 1 0.3295 -2.4447 0.1142 30 1 4.1353 -3.9412 0.2528 31 1 3.8121 -2.6015 -0.8791 32 1 4.7098 -4.6636 -2.0191 33 1 3.1024 -4.1799 -2.6116 34 1 4.3975 -7.0083 -2.7129 35 1 2.9329 -7.9013 -2.2372 36 1 2.8199 -6.5659 -3.4083 37 1 3.6604 -5.7380 0.7037 38 1 3.4239 -7.4177 0.1648 39 1 4.8872 -6.5260 -0.3173 40 1 1.0959 -5.4104 -1.9535 41 1 1.1983 -6.8175 -0.8680 42 1 0.3100 -4.7499 0.2698 43 1 1.8055 -5.3707 1.0167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269685512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:22 Heat of formation + Delta-G solvation = -35.194355 kcal Electronic energy + Delta-G solvation = -20731.891603 eV Core-core repulsion = 17776.806354 eV Total energy + Delta-G solvation = -2955.085248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80979 -38.49996 -34.94401 -33.83865 -32.55056 -30.93973 -29.27728 -27.61291 -27.38197 -25.81412 -24.47167 -22.92185 -22.60185 -19.96795 -18.52636 -17.29348 -16.48277 -16.32196 -15.37608 -14.89994 -14.82547 -14.44035 -14.19653 -14.04601 -13.81116 -13.34026 -12.79327 -12.51422 -12.38835 -12.21987 -12.08839 -11.89553 -11.85427 -11.68626 -11.42909 -11.28674 -11.11320 -10.93411 -10.82378 -10.61917 -10.51777 -10.29423 -10.09659 -9.99529 -9.60381 -8.71582 -8.40690 -8.38687 -7.52661 -6.00604 -4.05367 1.82762 3.34055 3.38159 3.41454 4.00744 4.14935 4.47804 4.63141 4.72561 4.77437 5.00664 5.12790 5.28178 5.32886 5.36659 5.44787 5.54893 5.59205 5.62792 5.66856 5.72529 5.80169 5.84606 5.85402 5.89584 5.98776 6.00399 6.03726 6.21332 6.23783 6.26727 6.30324 6.44275 6.58959 6.85001 7.02516 7.20382 7.51097 7.63427 7.96390 8.27980 8.52749 8.94899 9.20497 9.59691 11.07277 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.004617 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.716974 B = 6063.515567 C = 6611.348526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.536 3.464 13 O -0.539 6.539 14 C -0.220 4.220 15 C -0.040 4.040 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.069 4.069 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.104 4.104 22 C -0.091 4.091 23 H 0.042 0.958 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 -19.184 0.475 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.330 5.330 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.326 3.674 13 O -0.420 6.420 14 C -0.241 4.241 15 C -0.041 4.041 16 C -0.157 4.157 17 C -0.142 4.142 18 C -0.069 4.069 19 C -0.198 4.198 20 C -0.202 4.202 21 C -0.142 4.142 22 C -0.128 4.128 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.871 -18.954 0.522 19.577 hybrid contribution -0.088 0.411 -0.977 1.064 sum -4.958 -18.543 -0.455 19.200 Atomic orbital electron populations 1.21640 0.81600 1.02432 1.00271 1.48076 1.06105 1.07867 1.70956 1.19271 0.92569 0.78176 0.97420 1.21407 1.36436 1.06222 0.92305 0.92558 1.24932 0.95392 0.96391 0.97370 1.69927 1.38431 1.14367 1.30753 0.86566 0.78341 0.77801 0.84755 1.20285 1.21178 1.20190 1.18401 0.87347 0.84045 0.77618 1.90559 1.13754 1.86661 1.51022 1.22602 0.99659 0.92841 1.09027 1.22551 0.96543 0.93482 0.91569 1.21614 0.92419 1.04050 0.97577 1.21657 1.00690 0.93494 0.98354 1.20574 0.95132 0.95665 0.95501 1.21868 1.01512 0.98478 0.97946 1.21980 1.00001 1.00544 0.97675 1.21610 0.95610 0.98962 0.97970 1.20950 0.99880 0.93205 0.98727 0.93899 0.90942 0.92335 0.95137 0.93800 0.92702 0.86148 0.90931 0.85575 0.91810 0.92142 0.92718 0.92973 0.92781 0.91820 0.93146 0.92823 0.91817 0.91932 0.91262 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.11 59.85 0.61 2.02 16 2 N -0.60 -13.29 2.86 -184.36 -0.53 -13.82 16 3 C 0.24 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.54 11.65 7.48 -12.66 -0.09 11.55 16 13 O -0.54 -13.55 12.80 5.26 0.07 -13.48 16 14 C -0.22 -3.63 8.76 -37.81 -0.33 -3.96 16 15 C -0.04 -0.58 5.38 -100.61 -0.54 -1.12 16 16 C -0.12 -1.90 4.76 -27.49 -0.13 -2.03 16 17 C -0.10 -1.36 4.78 -26.64 -0.13 -1.48 16 18 C -0.07 -0.71 0.76 -154.55 -0.12 -0.83 16 19 C -0.14 -1.28 8.46 37.16 0.31 -0.96 16 20 C -0.14 -1.42 7.58 37.16 0.28 -1.14 16 21 C -0.10 -1.03 4.78 -26.63 -0.13 -1.16 16 22 C -0.09 -0.99 5.51 -27.49 -0.15 -1.14 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.06 0.82 6.20 -51.93 -0.32 0.50 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.12 1.64 6.26 -52.49 -0.33 1.32 16 30 H 0.07 1.11 6.67 -51.93 -0.35 0.76 16 31 H 0.13 2.54 4.79 -52.85 -0.25 2.29 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.67 4.92 -51.93 -0.26 0.42 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 43 H 0.08 0.83 6.68 -51.93 -0.35 0.48 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -32.17 332.70 -7.86 -40.03 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.26 Total: -1.09 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.87 Total: -7.53 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.21 Total: -40.06 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.07 Total: -13.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.17 -7.86 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269685512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds