Wall clock time and date at job start Mon Mar 30 2020 08:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 119.99973 * 2 1 4 4 C 1.50701 * 109.46776 * 270.00234 * 3 2 1 5 5 H 1.07997 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99642 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99979 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00241 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46844 * 59.99839 * 8 6 4 10 10 H 1.48497 * 109.47277 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47038 * 299.99806 * 8 6 4 12 12 C 1.34780 * 119.99859 * 180.02562 * 2 1 3 13 13 O 1.21616 * 119.99618 * 180.02562 * 12 2 1 14 14 C 1.47102 * 120.00126 * 359.97438 * 12 2 1 15 15 C 1.32992 * 119.99852 * 172.97349 * 14 12 2 16 16 C 1.51271 * 120.84253 * 347.83023 * 15 14 12 17 17 C 1.53225 * 108.53358 * 231.32543 * 16 15 14 18 18 C 1.52959 * 109.41753 * 305.38959 * 17 16 15 19 19 C 1.53001 * 109.41460 * 183.70088 * 18 17 16 20 20 C 1.53000 * 109.40952 * 303.48860 * 18 17 16 21 21 C 1.52963 * 109.81667 * 63.59300 * 18 17 16 22 22 C 1.51263 * 120.84676 * 167.82744 * 15 14 12 23 23 H 1.08995 * 109.47155 * 269.99988 * 1 2 3 24 24 H 1.09001 * 109.46792 * 29.99997 * 1 2 3 25 25 H 1.08997 * 109.47137 * 149.99557 * 1 2 3 26 26 H 1.09000 * 109.47012 * 29.99972 * 3 2 1 27 27 H 1.08994 * 109.47213 * 150.00318 * 3 2 1 28 28 H 0.96999 * 120.00103 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.99836 * 352.97846 * 14 12 2 30 30 H 1.08994 * 109.61697 * 111.61041 * 16 15 14 31 31 H 1.09007 * 109.63175 * 351.04040 * 16 15 14 32 32 H 1.09002 * 109.47995 * 185.40202 * 17 16 15 33 33 H 1.09006 * 109.48625 * 65.37931 * 17 16 15 34 34 H 1.08993 * 109.47435 * 59.99889 * 19 18 17 35 35 H 1.09001 * 109.46556 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.46786 * 299.99872 * 19 18 17 37 37 H 1.09001 * 109.47144 * 60.00079 * 20 18 17 38 38 H 1.09000 * 109.46688 * 179.97438 * 20 18 17 39 39 H 1.09000 * 109.47074 * 299.99265 * 20 18 17 40 40 H 1.08995 * 109.48063 * 56.37972 * 21 18 17 41 41 H 1.08995 * 109.47935 * 176.40902 * 21 18 17 42 42 H 1.09001 * 109.63043 * 8.94582 * 22 15 14 43 43 H 1.08997 * 109.62946 * 248.37734 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4388 3.4164 -3.4339 9 1 2.1414 3.5943 -4.1342 10 1 4.1812 4.7025 -3.4339 11 1 4.2412 2.3812 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3551 -1.1672 -0.0001 14 6 1.4034 -2.4412 -0.0005 15 6 2.0609 -3.5886 -0.1419 16 6 3.5105 -3.6036 -0.5740 17 6 3.6563 -4.5672 -1.7564 18 6 3.1002 -5.9379 -1.3668 19 6 3.3292 -6.9243 -2.5138 20 6 3.8198 -6.4411 -0.1139 21 6 1.6013 -5.8277 -1.0826 22 6 1.3782 -4.9117 0.1253 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1384 0.5138 28 1 4.0311 4.4435 -0.8504 29 1 0.3295 -2.4447 0.1142 30 1 4.1353 -3.9412 0.2528 31 1 3.8121 -2.6015 -0.8791 32 1 4.7098 -4.6636 -2.0191 33 1 3.1024 -4.1799 -2.6116 34 1 4.3975 -7.0083 -2.7129 35 1 2.9329 -7.9013 -2.2372 36 1 2.8199 -6.5659 -3.4083 37 1 3.6604 -5.7380 0.7037 38 1 3.4239 -7.4177 0.1648 39 1 4.8872 -6.5260 -0.3173 40 1 1.0959 -5.4104 -1.9535 41 1 1.1983 -6.8175 -0.8680 42 1 0.3100 -4.7499 0.2698 43 1 1.8055 -5.3707 1.0167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269685512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:21 Heat of formation + Delta-G solvation = -53.969441 kcal Electronic energy + Delta-G solvation = -20732.705751 eV Core-core repulsion = 17776.806354 eV Total energy + Delta-G solvation = -2955.899397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09739 -39.85099 -36.68620 -35.05420 -34.67680 -31.95192 -30.70346 -29.29936 -28.14128 -27.34448 -25.92560 -24.29305 -23.95209 -21.28643 -19.80807 -18.69701 -18.50378 -17.89590 -16.93940 -16.37800 -16.08039 -15.78016 -15.65557 -14.94924 -14.93223 -14.74811 -14.22207 -14.04596 -13.70420 -13.54405 -13.45353 -13.24130 -13.07679 -12.84927 -12.67958 -12.65290 -12.55048 -12.39182 -12.20111 -12.11627 -11.85667 -11.72230 -11.50463 -11.29117 -11.02349 -10.65568 -10.14485 -9.83193 -9.31872 -8.22851 -6.38621 0.51152 1.34783 1.39273 1.46927 2.30182 2.50186 2.54613 3.05612 3.67330 3.80403 3.92405 3.95006 4.06632 4.28025 4.39264 4.44867 4.49614 4.52851 4.67018 4.70481 4.80439 4.83400 4.88301 4.89120 4.97685 5.01078 5.05942 5.09394 5.17845 5.20505 5.22400 5.24085 5.30534 5.37317 5.47053 5.56491 5.60002 5.69244 5.84544 5.89210 6.06110 6.69223 6.85299 7.27839 7.55045 8.83656 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.004617 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.716974 B = 6063.515567 C = 6611.348526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.611 5.611 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.590 6.590 14 C -0.239 4.239 15 C -0.019 4.019 16 C -0.124 4.124 17 C -0.100 4.100 18 C -0.066 4.066 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.102 4.102 22 C -0.086 4.086 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.022 0.978 27 H -0.003 1.003 28 H 0.268 0.732 29 H 0.158 0.842 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -21.843 -0.408 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.341 5.341 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.315 3.685 13 O -0.474 6.474 14 C -0.259 4.259 15 C -0.021 4.021 16 C -0.161 4.161 17 C -0.138 4.138 18 C -0.066 4.066 19 C -0.195 4.195 20 C -0.201 4.201 21 C -0.139 4.139 22 C -0.123 4.123 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.040 0.960 27 H 0.015 0.985 28 H 0.077 0.923 29 H 0.175 0.825 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.920 -21.628 -0.356 22.711 hybrid contribution 0.620 1.193 -0.660 1.498 sum -6.300 -20.435 -1.016 21.408 Atomic orbital electron populations 1.21911 0.78125 1.03727 1.02388 1.48117 1.08320 1.06417 1.71243 1.18726 0.91019 0.80398 0.96016 1.21656 1.36996 1.06597 0.92926 0.93138 1.25873 0.94804 0.96325 1.02100 1.70049 1.38851 1.14802 1.33135 0.85461 0.78876 0.77398 0.79036 1.18421 1.20074 1.20396 1.19380 0.87199 0.85553 0.76411 1.90561 1.16160 1.87581 1.53117 1.22505 1.01022 0.90230 1.12161 1.22963 0.95661 0.95227 0.88237 1.21475 0.93756 1.02131 0.98743 1.21621 1.00782 0.94788 0.96603 1.20563 0.95755 0.93899 0.96398 1.21838 1.01619 0.98852 0.97224 1.21971 0.99957 1.01319 0.96871 1.21635 0.94857 1.00138 0.97292 1.21061 1.00893 0.90587 0.99734 0.91289 0.91694 0.88968 0.96033 0.98504 0.92341 0.82509 0.90877 0.90401 0.92083 0.93191 0.92885 0.91095 0.92915 0.92864 0.91001 0.93170 0.92094 0.89070 0.88870 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.11 127.77 1.29 3.90 16 2 N -0.61 -27.91 2.86 -855.43 -2.44 -30.35 16 3 C 0.26 14.78 5.16 85.63 0.44 15.22 16 4 C -0.54 -32.61 9.39 25.60 0.24 -32.37 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.47 5.46 84.66 0.46 0.93 16 7 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 8 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.52 23.51 7.48 86.57 0.65 24.16 16 13 O -0.59 -31.85 12.80 -4.08 -0.05 -31.90 16 14 C -0.24 -7.61 8.76 23.43 0.21 -7.41 16 15 C -0.02 -0.53 5.38 -17.26 -0.09 -0.62 16 16 C -0.12 -4.03 4.76 30.10 0.14 -3.88 16 17 C -0.10 -2.58 4.78 30.66 0.15 -2.44 16 18 C -0.07 -1.21 0.76 -52.21 -0.04 -1.25 16 19 C -0.14 -2.10 8.46 71.98 0.61 -1.49 16 20 C -0.14 -2.45 7.58 71.98 0.55 -1.90 16 21 C -0.10 -1.61 4.78 30.66 0.15 -1.47 16 22 C -0.09 -1.54 5.51 30.11 0.17 -1.37 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 25 H 0.09 2.34 6.20 -2.39 -0.01 2.33 16 26 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 27 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.16 3.75 6.26 -2.91 -0.02 3.73 16 30 H 0.07 2.31 6.67 -2.39 -0.02 2.30 16 31 H 0.08 3.39 4.79 -17.06 -0.08 3.30 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 1.01 4.92 -2.39 -0.01 1.00 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 1.31 7.92 -2.39 -0.02 1.29 16 43 H 0.10 1.55 6.68 -2.39 -0.02 1.54 16 Total: -1.00 -75.07 332.70 5.63 -69.44 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.90 Total: 12.09 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.91 Total: -9.99 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.16 Total: -87.72 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.05 Total: -31.90 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.07 5.63 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269685512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.468 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds