Wall clock time and date at job start Mon Mar 30 2020 08:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.35394 * 2 1 4 4 C 1.52961 * 109.41778 * 119.82634 * 2 1 3 5 5 C 1.53221 * 109.41673 * 183.69873 * 4 2 1 6 6 C 1.51276 * 108.53692 * 305.38858 * 5 4 2 7 7 C 1.32984 * 120.84444 * 231.32502 * 6 5 4 8 8 C 1.47102 * 119.99852 * 347.80405 * 7 6 5 9 9 O 1.21616 * 120.00256 * 353.01140 * 8 7 6 10 10 N 1.34780 * 120.00126 * 173.01606 * 8 7 6 11 11 C 1.46503 * 120.00168 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46945 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47164 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00012 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00372 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99978 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99694 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47004 * 90.00795 * 17 15 13 19 19 H 1.48504 * 109.46878 * 209.99978 * 17 15 13 20 20 H 1.48494 * 109.47464 * 330.00030 * 17 15 13 21 21 C 1.51272 * 118.30450 * 51.32894 * 6 5 4 22 22 C 1.52960 * 109.41062 * 240.17966 * 2 1 3 23 23 H 1.09005 * 109.46946 * 300.17076 * 1 2 3 24 24 H 1.08999 * 109.47787 * 60.17308 * 1 2 3 25 25 H 1.09004 * 109.47262 * 180.17833 * 1 2 3 26 26 H 1.09000 * 109.46942 * 179.82542 * 3 2 1 27 27 H 1.09004 * 109.47456 * 299.82439 * 3 2 1 28 28 H 1.08999 * 109.47189 * 59.83048 * 3 2 1 29 29 H 1.09001 * 109.47654 * 303.68578 * 4 2 1 30 30 H 1.08993 * 109.47945 * 63.70581 * 4 2 1 31 31 H 1.09004 * 109.63225 * 65.09286 * 5 4 2 32 32 H 1.09003 * 109.63078 * 185.66322 * 5 4 2 33 33 H 1.07998 * 120.00287 * 167.79668 * 7 6 5 34 34 H 0.97006 * 119.99870 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47125 * 299.99674 * 11 10 8 36 36 H 1.09005 * 109.46730 * 59.99713 * 11 10 8 37 37 H 1.08999 * 109.47942 * 300.00038 * 12 11 10 38 38 H 1.09005 * 109.47368 * 60.00438 * 12 11 10 39 39 H 0.97002 * 119.99748 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.62550 * 188.94578 * 21 6 5 41 41 H 1.08998 * 109.62829 * 68.37645 * 21 6 5 42 42 H 1.08996 * 109.48370 * 296.26723 * 22 2 1 43 43 H 1.08998 * 109.48657 * 56.30199 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0370 1.4436 0.0000 4 6 2.0385 -0.7175 1.2515 5 6 3.5678 -0.6371 1.2987 6 6 4.1185 -1.1832 -0.0001 7 6 5.0626 -2.1198 -0.0002 8 6 5.7743 -2.4468 1.2449 9 8 5.5917 -1.7771 2.2436 10 7 6.6288 -3.4885 1.2791 11 6 7.3380 -3.8139 2.5190 12 6 8.2372 -5.0299 2.2881 13 6 8.9673 -5.3643 3.5634 14 1 8.8057 -4.7692 4.4500 15 6 9.8415 -6.4299 3.5983 16 7 10.4782 -6.7219 4.7114 17 14 10.1204 -7.4597 2.0649 18 1 11.2426 -6.8851 1.2803 19 1 10.4534 -8.8525 2.4580 20 1 8.8872 -7.4602 1.2378 21 6 3.5678 -0.6367 -1.2988 22 6 2.0383 -0.7174 -1.2516 23 1 -0.3633 0.5165 0.8885 24 1 -0.3635 0.5111 -0.8915 25 1 -0.3634 -1.0277 0.0032 26 1 3.1270 1.4458 0.0031 27 1 1.6752 1.9558 -0.8916 28 1 1.6701 1.9575 0.8884 29 1 1.6217 -0.2404 2.1386 30 1 1.7300 -1.7625 1.2220 31 1 3.8764 0.4014 1.4191 32 1 3.9402 -1.2316 2.1331 33 1 5.3067 -2.6404 -0.9144 34 1 6.7742 -4.0229 0.4826 35 1 7.9479 -2.9631 2.8227 36 1 6.6148 -4.0406 3.3024 37 1 7.6271 -5.8807 1.9846 38 1 8.9605 -4.8036 1.5046 39 1 11.0929 -7.4718 4.7360 40 1 3.9402 -1.2310 -2.1332 41 1 3.8761 0.4018 -1.4189 42 1 1.7302 -1.7625 -1.2220 43 1 1.6214 -0.2405 -2.1387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273046951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:26 Heat of formation + Delta-G solvation = -50.172766 kcal Electronic energy + Delta-G solvation = -19949.682615 eV Core-core repulsion = 16993.947854 eV Total energy + Delta-G solvation = -2955.734761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10433 -38.82907 -35.16244 -34.07379 -32.79006 -31.18526 -30.43771 -28.99901 -27.55839 -25.51570 -24.00826 -23.17138 -21.09128 -20.65436 -19.45118 -17.88099 -16.96296 -16.46371 -15.62549 -15.17715 -15.03511 -14.66421 -14.28493 -14.26827 -14.07964 -13.90007 -13.26619 -12.92109 -12.78956 -12.61507 -12.51950 -12.08048 -12.03661 -11.68825 -11.50616 -11.47444 -11.21665 -11.09147 -10.86152 -10.60445 -10.37577 -10.34277 -10.09721 -9.94560 -9.36095 -9.14679 -8.86020 -8.61982 -8.39841 -6.10305 -4.10259 1.46352 3.25927 3.33535 3.34990 3.57671 3.72018 4.38549 4.42346 4.52383 4.57397 4.79262 4.88460 5.08554 5.14522 5.22704 5.26081 5.33711 5.41193 5.41863 5.46269 5.54260 5.64529 5.65842 5.69101 5.79418 5.84078 6.00145 6.02494 6.05892 6.11282 6.21187 6.23452 6.33602 6.54196 6.58745 6.67271 6.92359 7.17683 7.25253 7.68189 7.99893 8.44991 8.66873 8.94246 9.49962 11.02806 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045727 B = 0.003125 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.184544 B = 8958.205110 C = 9213.405135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.027 4.027 7 C -0.227 4.227 8 C 0.539 3.461 9 O -0.546 6.546 10 N -0.722 5.722 11 C 0.130 3.870 12 C -0.022 4.022 13 C -0.522 4.522 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.094 4.094 22 C -0.105 4.105 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.396 0.604 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 12.921 -14.815 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.203 4.203 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.029 4.029 7 C -0.248 4.248 8 C 0.328 3.672 9 O -0.427 6.427 10 N -0.371 5.371 11 C 0.007 3.993 12 C -0.060 4.060 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.131 4.131 22 C -0.142 4.142 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.426 13.236 -13.997 26.658 hybrid contribution 0.420 -0.986 -1.245 1.643 sum -18.006 12.250 -15.241 26.582 Atomic orbital electron populations 1.21869 0.94729 1.01674 1.01578 1.20579 0.95132 0.95726 0.95492 1.21987 1.01705 0.95176 1.01406 1.21662 0.95484 1.00255 0.96856 1.21625 0.94114 1.02945 0.97092 1.22625 0.91647 0.92113 0.96556 1.22402 1.01679 1.02737 0.98023 1.18553 0.79887 0.80423 0.88305 1.90589 1.64253 1.51242 1.36651 1.46270 1.44292 1.31070 1.15473 1.21491 0.94608 0.98854 0.84301 1.19793 0.94772 0.92893 0.98550 1.20932 1.24217 1.14600 0.96339 0.90628 1.25005 0.95225 0.97013 0.96081 1.69907 1.28214 1.29141 1.26471 0.86744 0.78931 0.79703 0.83651 1.20230 1.21282 1.19080 1.20995 0.95907 1.01641 0.94512 1.21620 0.94421 1.00768 0.97417 0.92653 0.92846 0.92737 0.91887 0.92990 0.92741 0.91630 0.92089 0.90580 0.85901 0.85910 0.77089 0.91990 0.91979 0.96024 0.96466 0.92564 0.90988 0.89689 0.91737 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.46 37.15 0.31 -0.70 16 2 C -0.07 -0.57 0.76 -154.55 -0.12 -0.68 16 3 C -0.15 -1.13 7.58 37.16 0.28 -0.85 16 4 C -0.11 -1.06 4.78 -26.64 -0.13 -1.18 16 5 C -0.12 -1.50 4.76 -27.49 -0.13 -1.63 16 6 C -0.03 -0.32 5.38 -100.61 -0.54 -0.86 16 7 C -0.23 -2.91 9.66 -37.81 -0.37 -3.27 16 8 C 0.54 9.03 7.62 -12.66 -0.10 8.94 16 9 O -0.55 -10.77 13.22 5.26 0.07 -10.70 16 10 N -0.72 -12.26 5.55 -61.49 -0.34 -12.61 16 11 C 0.13 2.70 5.61 -4.04 -0.02 2.68 16 12 C -0.02 -0.52 4.16 -27.89 -0.12 -0.63 16 13 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 14 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 17 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 21 C -0.09 -0.80 5.51 -27.48 -0.15 -0.95 16 22 C -0.10 -0.82 4.78 -26.63 -0.13 -0.94 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.53 4.92 -51.93 -0.26 0.28 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.93 6.67 -51.93 -0.35 0.58 16 32 H 0.12 1.93 4.79 -52.86 -0.25 1.68 16 33 H 0.12 1.25 7.96 -52.49 -0.42 0.84 16 34 H 0.40 5.65 8.46 -40.82 -0.35 5.30 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 38 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 41 H 0.08 0.68 6.68 -51.93 -0.35 0.33 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -31.41 333.15 -8.16 -39.57 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.38 Total: 2.27 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.63 Total: -13.32 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.43 Total: -39.37 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.41 -8.16 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273046951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.608 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds