Wall clock time and date at job start Mon Mar 30 2020 08:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.35394 * 2 1 4 4 C 1.52961 * 109.41778 * 119.82634 * 2 1 3 5 5 C 1.53221 * 109.41673 * 183.69873 * 4 2 1 6 6 C 1.51276 * 108.53692 * 305.38858 * 5 4 2 7 7 C 1.32984 * 120.84444 * 231.32502 * 6 5 4 8 8 C 1.47102 * 119.99852 * 347.80405 * 7 6 5 9 9 O 1.21616 * 120.00256 * 353.01140 * 8 7 6 10 10 N 1.34780 * 120.00126 * 173.01606 * 8 7 6 11 11 C 1.46503 * 120.00168 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46945 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47164 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00012 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00372 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99978 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99694 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47004 * 90.00795 * 17 15 13 19 19 H 1.48504 * 109.46878 * 209.99978 * 17 15 13 20 20 H 1.48494 * 109.47464 * 330.00030 * 17 15 13 21 21 C 1.51272 * 118.30450 * 51.32894 * 6 5 4 22 22 C 1.52960 * 109.41062 * 240.17966 * 2 1 3 23 23 H 1.09005 * 109.46946 * 300.17076 * 1 2 3 24 24 H 1.08999 * 109.47787 * 60.17308 * 1 2 3 25 25 H 1.09004 * 109.47262 * 180.17833 * 1 2 3 26 26 H 1.09000 * 109.46942 * 179.82542 * 3 2 1 27 27 H 1.09004 * 109.47456 * 299.82439 * 3 2 1 28 28 H 1.08999 * 109.47189 * 59.83048 * 3 2 1 29 29 H 1.09001 * 109.47654 * 303.68578 * 4 2 1 30 30 H 1.08993 * 109.47945 * 63.70581 * 4 2 1 31 31 H 1.09004 * 109.63225 * 65.09286 * 5 4 2 32 32 H 1.09003 * 109.63078 * 185.66322 * 5 4 2 33 33 H 1.07998 * 120.00287 * 167.79668 * 7 6 5 34 34 H 0.97006 * 119.99870 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47125 * 299.99674 * 11 10 8 36 36 H 1.09005 * 109.46730 * 59.99713 * 11 10 8 37 37 H 1.08999 * 109.47942 * 300.00038 * 12 11 10 38 38 H 1.09005 * 109.47368 * 60.00438 * 12 11 10 39 39 H 0.97002 * 119.99748 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.62550 * 188.94578 * 21 6 5 41 41 H 1.08998 * 109.62829 * 68.37645 * 21 6 5 42 42 H 1.08996 * 109.48370 * 296.26723 * 22 2 1 43 43 H 1.08998 * 109.48657 * 56.30199 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0370 1.4436 0.0000 4 6 2.0385 -0.7175 1.2515 5 6 3.5678 -0.6371 1.2987 6 6 4.1185 -1.1832 -0.0001 7 6 5.0626 -2.1198 -0.0002 8 6 5.7743 -2.4468 1.2449 9 8 5.5917 -1.7771 2.2436 10 7 6.6288 -3.4885 1.2791 11 6 7.3380 -3.8139 2.5190 12 6 8.2372 -5.0299 2.2881 13 6 8.9673 -5.3643 3.5634 14 1 8.8057 -4.7692 4.4500 15 6 9.8415 -6.4299 3.5983 16 7 10.4782 -6.7219 4.7114 17 14 10.1204 -7.4597 2.0649 18 1 11.2426 -6.8851 1.2803 19 1 10.4534 -8.8525 2.4580 20 1 8.8872 -7.4602 1.2378 21 6 3.5678 -0.6367 -1.2988 22 6 2.0383 -0.7174 -1.2516 23 1 -0.3633 0.5165 0.8885 24 1 -0.3635 0.5111 -0.8915 25 1 -0.3634 -1.0277 0.0032 26 1 3.1270 1.4458 0.0031 27 1 1.6752 1.9558 -0.8916 28 1 1.6701 1.9575 0.8884 29 1 1.6217 -0.2404 2.1386 30 1 1.7300 -1.7625 1.2220 31 1 3.8764 0.4014 1.4191 32 1 3.9402 -1.2316 2.1331 33 1 5.3067 -2.6404 -0.9144 34 1 6.7742 -4.0229 0.4826 35 1 7.9479 -2.9631 2.8227 36 1 6.6148 -4.0406 3.3024 37 1 7.6271 -5.8807 1.9846 38 1 8.9605 -4.8036 1.5046 39 1 11.0929 -7.4718 4.7360 40 1 3.9402 -1.2310 -2.1332 41 1 3.8761 0.4018 -1.4189 42 1 1.7302 -1.7625 -1.2220 43 1 1.6214 -0.2405 -2.1387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273046951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:26 Heat of formation + Delta-G solvation = -69.684854 kcal Electronic energy + Delta-G solvation = -19950.528723 eV Core-core repulsion = 16993.947854 eV Total energy + Delta-G solvation = -2956.580869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15152 -39.88844 -36.73913 -35.03524 -34.79306 -32.21142 -31.95259 -30.01981 -28.15262 -27.08654 -25.16816 -23.97787 -22.76758 -22.02190 -20.43458 -19.01933 -18.78829 -17.73856 -16.69727 -16.54642 -16.25814 -15.86031 -15.71588 -15.22801 -15.09816 -14.89932 -14.71342 -14.59395 -13.86375 -13.62320 -13.38479 -13.28237 -13.03877 -12.75830 -12.68736 -12.42332 -12.22520 -12.17589 -12.13306 -11.86209 -11.76811 -11.56238 -11.52383 -11.36154 -11.04237 -10.80002 -10.39153 -9.99572 -9.75495 -8.31346 -6.38815 0.42848 1.38248 1.41066 1.52494 2.33935 2.36055 2.38581 3.03607 3.67820 3.79830 3.91445 3.96481 4.05498 4.29040 4.38996 4.40196 4.41802 4.44929 4.52362 4.64704 4.73696 4.79602 4.86527 4.88193 4.90349 5.04921 5.09037 5.11432 5.16813 5.21502 5.22218 5.27049 5.35404 5.39128 5.45097 5.47270 5.58401 5.63496 5.70603 5.80918 6.21146 6.66012 6.73548 7.25746 7.36995 8.85588 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045727 B = 0.003125 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.184544 B = 8958.205110 C = 9213.405135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.125 4.125 6 C -0.014 4.014 7 C -0.241 4.241 8 C 0.532 3.468 9 O -0.585 6.585 10 N -0.715 5.715 11 C 0.145 3.855 12 C -0.012 4.012 13 C -0.541 4.541 14 H 0.028 0.972 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.961 3.039 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.237 1.237 21 C -0.090 4.090 22 C -0.103 4.103 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.413 0.587 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.268 0.732 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.863 12.921 -19.018 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.139 4.139 5 C -0.161 4.161 6 C -0.016 4.016 7 C -0.261 4.261 8 C 0.324 3.676 9 O -0.469 6.469 10 N -0.366 5.366 11 C 0.021 3.979 12 C -0.050 4.050 13 C -0.579 4.579 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.783 3.217 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.160 1.160 21 C -0.127 4.127 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.249 0.751 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.857 13.248 -18.232 30.036 hybrid contribution 0.801 -0.870 0.221 1.203 sum -19.056 12.378 -18.011 28.995 Atomic orbital electron populations 1.21845 0.93734 1.01856 1.02204 1.20571 0.95902 0.95700 0.94576 1.21978 1.01149 0.95001 1.02062 1.21630 0.93713 1.00261 0.98317 1.21513 0.95840 1.02089 0.96663 1.22960 0.90426 0.90645 0.97585 1.22389 1.02408 1.04332 0.97005 1.19310 0.79474 0.79525 0.89316 1.90605 1.65330 1.52424 1.38515 1.46028 1.44168 1.31756 1.14615 1.20989 0.93824 0.97317 0.85735 1.19641 0.95027 0.94037 0.96257 1.21268 1.25211 1.14350 0.97100 0.95401 1.26101 0.94601 0.98485 1.00166 1.70078 1.29316 1.30194 1.29495 0.85515 0.80216 0.77158 0.78849 1.18907 1.21149 1.16040 1.21082 0.96358 1.02299 0.92926 1.21635 0.93740 1.00844 0.97798 0.92824 0.91478 0.92793 0.92708 0.91409 0.93088 0.91839 0.92733 0.90763 0.89584 0.82552 0.75091 0.94004 0.94042 0.94558 0.94661 0.92283 0.88999 0.88605 0.91910 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.46 71.98 0.61 -1.04 16 2 C -0.07 -0.95 0.76 -52.21 -0.04 -0.99 16 3 C -0.14 -1.93 7.58 71.98 0.55 -1.38 16 4 C -0.10 -1.99 4.78 30.66 0.15 -1.84 16 5 C -0.12 -3.09 4.76 30.10 0.14 -2.94 16 6 C -0.01 -0.30 5.38 -17.25 -0.09 -0.39 16 7 C -0.24 -5.68 9.66 23.43 0.23 -5.46 16 8 C 0.53 17.78 7.62 86.57 0.66 18.43 16 9 O -0.58 -24.05 13.22 -4.08 -0.05 -24.11 16 10 N -0.72 -23.74 5.55 -466.70 -2.59 -26.33 16 11 C 0.15 6.18 5.61 86.38 0.48 6.67 16 12 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 13 C -0.54 -31.51 9.66 25.60 0.25 -31.26 16 14 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 15 C 0.00 0.21 5.47 84.65 0.46 0.67 16 16 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 17 Si 0.96 42.81 27.47 68.60 1.88 44.69 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.24 -9.43 6.54 99.48 0.65 -8.77 16 21 C -0.09 -1.21 5.51 30.11 0.17 -1.05 16 22 C -0.10 -1.24 4.78 30.66 0.15 -1.09 16 23 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.05 0.82 4.92 -2.39 -0.01 0.81 16 27 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.84 6.67 -2.39 -0.02 1.82 16 32 H 0.09 2.85 4.79 -17.23 -0.08 2.77 16 33 H 0.16 2.59 7.96 -2.91 -0.02 2.57 16 34 H 0.41 10.77 8.46 -92.70 -0.78 9.99 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.04 1.56 7.20 -2.39 -0.02 1.55 16 38 H 0.04 1.50 7.57 -2.38 -0.02 1.48 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.09 0.95 7.92 -2.39 -0.02 0.93 16 41 H 0.10 1.17 6.68 -2.39 -0.02 1.15 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -71.55 333.15 3.44 -68.11 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.07 Total: 19.40 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.83 Total: -22.09 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.29 Total: -86.00 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -71.55 3.44 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273046951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.577 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds