Wall clock time and date at job start Mon Mar 30 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99526 * 9 7 5 11 11 H 1.48502 * 109.47256 * 209.99504 * 9 7 5 12 12 H 1.48499 * 109.47077 * 329.99852 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.52996 * 109.47022 * 169.99926 * 15 13 2 17 17 C 1.50708 * 109.46924 * 180.02562 * 16 15 13 18 18 C 1.38239 * 119.97360 * 269.72537 * 17 16 15 19 19 C 1.38191 * 120.02619 * 179.72542 * 18 17 16 20 20 C 1.38464 * 119.97590 * 0.57344 * 19 18 17 21 21 F 1.35093 * 120.02957 * 179.68472 * 20 19 18 22 22 C 1.38461 * 119.94113 * 359.69763 * 20 19 18 23 23 C 1.38193 * 119.97920 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.97004 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.08997 * 109.47190 * 299.99825 * 16 15 13 36 36 H 1.09001 * 109.47349 * 60.00258 * 16 15 13 37 37 H 1.08001 * 119.98715 * 359.97438 * 18 17 16 38 38 H 1.08007 * 120.01561 * 180.25165 * 19 18 17 39 39 H 1.08005 * 120.01009 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.99004 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.4711 0.1598 3.1896 11 1 6.6443 -2.2580 3.1222 12 1 6.6413 -0.9845 1.0584 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4884 -0.5257 -3.5972 17 6 2.2152 0.2848 -4.8381 18 6 1.1370 -0.0288 -5.6444 19 6 0.8822 0.7173 -6.7794 20 6 1.7142 1.7719 -7.1153 21 9 1.4698 2.4979 -8.2280 22 6 2.7970 2.0815 -6.3098 23 6 3.0465 1.3376 -5.1723 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2448 4.0348 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 3.5599 -0.5338 -3.3976 36 1 2.1387 -1.5474 -3.7460 37 1 0.4912 -0.8547 -5.3851 38 1 0.0374 0.4746 -7.4071 39 1 3.4469 2.9036 -6.5710 40 1 3.8913 1.5787 -4.5441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276355185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:34 Heat of formation + Delta-G solvation = -29.074481 kcal Electronic energy + Delta-G solvation = -19621.714459 eV Core-core repulsion = 16543.434283 eV Total energy + Delta-G solvation = -3078.280176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02959 -39.41940 -37.84786 -33.76793 -32.43106 -31.28343 -30.41927 -27.81184 -27.31932 -25.62078 -23.40445 -23.18698 -22.16033 -20.64232 -18.73805 -17.79871 -16.52300 -16.19167 -16.07194 -15.72589 -15.02188 -14.60736 -14.55624 -14.05694 -13.98299 -13.70406 -13.47023 -13.01499 -12.65307 -12.34315 -12.17863 -11.83221 -11.65980 -11.44822 -11.37710 -11.19641 -11.03093 -10.71796 -10.62803 -10.50022 -10.30579 -9.95747 -9.26599 -9.19436 -8.97296 -8.61712 -8.25391 -7.48001 -5.88296 -3.86016 1.00029 1.07785 3.39165 3.43234 3.45474 3.50197 4.11590 4.45659 4.56419 4.56950 4.71453 4.99173 5.09859 5.14873 5.34920 5.48594 5.50139 5.70428 5.72846 5.81363 5.86173 5.88822 5.96047 5.97387 6.02251 6.06331 6.10363 6.20522 6.29762 6.47445 6.54091 6.62494 6.72377 6.77331 6.99320 7.53469 7.68318 7.91215 8.02539 8.13154 8.58993 9.19947 9.75623 11.23757 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.003827 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.346040 B = 7315.064740 C = 7940.386417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.514 5.514 14 C 0.023 3.977 15 C 0.061 3.939 16 C -0.080 4.080 17 C -0.080 4.080 18 C -0.090 4.090 19 C -0.153 4.153 20 C 0.084 3.916 21 F -0.145 7.145 22 C -0.152 4.152 23 C -0.087 4.087 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.257 0.743 30 H 0.055 0.945 31 H 0.015 0.985 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 4.241 -18.155 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.237 5.237 14 C -0.125 4.125 15 C -0.068 4.068 16 C -0.118 4.118 17 C -0.081 4.081 18 C -0.108 4.108 19 C -0.172 4.172 20 C 0.065 3.935 21 F -0.124 7.124 22 C -0.170 4.170 23 C -0.105 4.105 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.797 4.117 -17.985 19.064 hybrid contribution 0.049 0.267 -0.190 0.332 sum -4.748 4.385 -18.175 19.290 Atomic orbital electron populations 1.22522 0.99809 1.01345 1.00603 1.21932 0.90024 0.98302 0.91894 0.91362 1.19202 0.96357 0.95399 0.89776 1.21173 0.91812 1.32889 1.06933 0.92158 1.25011 0.98020 0.95888 0.96024 1.69964 1.35232 1.36992 1.12372 0.86636 0.86396 0.77202 0.77987 1.21031 1.21585 1.19896 1.62106 1.58420 1.02149 1.01037 1.22430 0.95633 0.91721 1.02732 1.22054 0.96862 0.97727 0.90137 1.20679 1.02662 0.98045 0.90404 1.20114 0.94822 0.96345 0.96792 1.20958 0.97042 0.99308 0.93506 1.21117 1.00593 0.96157 0.99310 1.17721 0.97327 0.93222 0.85213 1.91479 1.94132 1.76492 1.50254 1.21154 0.97775 1.02051 0.96057 1.21033 0.99505 0.94224 0.95695 0.92588 0.94272 0.92774 0.96417 0.96213 0.93335 0.92626 0.96618 0.90158 0.95639 0.91269 0.89668 0.90784 0.85129 0.85013 0.84897 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.44 37.16 0.31 -2.81 16 2 C 0.09 1.72 2.26 -67.71 -0.15 1.57 16 3 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 4 C 0.03 0.74 4.37 -27.88 -0.12 0.62 16 5 C -0.49 -13.56 8.84 -34.44 -0.30 -13.86 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.51 -9.35 4.43 -234.88 -1.04 -10.39 16 14 C 0.02 0.39 8.44 60.07 0.51 0.89 16 15 C 0.06 0.89 4.51 -3.82 -0.02 0.87 16 16 C -0.08 -1.00 5.27 -27.88 -0.15 -1.15 16 17 C -0.08 -0.90 5.13 -104.62 -0.54 -1.43 16 18 C -0.09 -0.92 9.70 -39.60 -0.38 -1.31 16 19 C -0.15 -1.55 10.03 -39.52 -0.40 -1.94 16 20 C 0.08 0.93 7.30 -39.42 -0.29 0.64 16 21 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 22 C -0.15 -1.57 10.03 -39.52 -0.40 -1.97 16 23 C -0.09 -0.93 9.70 -39.60 -0.38 -1.31 16 24 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.04 0.59 6.91 -51.93 -0.36 0.23 16 26 H 0.05 0.91 6.42 -51.93 -0.33 0.58 16 27 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.02 0.52 6.26 -51.93 -0.33 0.20 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 31 H 0.02 0.24 6.46 -51.93 -0.34 -0.10 16 32 H 0.08 1.57 6.21 -51.93 -0.32 1.25 16 33 H 0.03 0.36 7.06 -51.93 -0.37 -0.01 16 34 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 35 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 0.88 6.49 -51.93 -0.34 0.54 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -29.87 326.10 -8.81 -38.68 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.04 Total: -2.16 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.40 Total: -19.86 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.30 Total: -36.78 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.87 -8.81 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276355185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.606 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds