Wall clock time and date at job start Mon Mar 30 2020 08:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 110.01881 * 2 1 4 4 O 1.21276 * 119.99836 * 238.61098 * 3 2 1 5 5 N 1.34773 * 119.99775 * 58.60763 * 3 2 1 6 6 C 1.46500 * 119.99760 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.67461 * 328.23097 * 6 5 3 8 8 C 1.54961 * 110.92632 * 91.53985 * 6 5 3 9 9 C 1.54270 * 104.16191 * 156.29508 * 8 6 5 10 10 C 1.53869 * 106.63967 * 336.44607 * 9 8 6 11 11 H 1.08999 * 110.03405 * 119.26051 * 10 9 8 12 12 C 1.50698 * 110.03390 * 240.69268 * 10 9 8 13 13 H 1.07996 * 120.00623 * 118.54486 * 12 10 9 14 14 C 1.37884 * 119.99638 * 298.54572 * 12 10 9 15 15 N 1.31516 * 119.99514 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 120.00038 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46929 * 89.99920 * 16 14 12 18 18 H 1.48500 * 109.47151 * 209.99890 * 16 14 12 19 19 H 1.48496 * 109.47160 * 329.99836 * 16 14 12 20 20 C 1.54268 * 106.60115 * 359.97438 * 10 9 8 21 21 C 1.54269 * 110.07359 * 121.41923 * 2 1 3 22 22 C 1.54884 * 104.19598 * 95.69340 * 21 2 1 23 23 C 1.54884 * 102.74733 * 37.94555 * 22 21 2 24 24 C 1.53877 * 110.03304 * 238.60742 * 2 1 3 25 25 H 1.08993 * 109.47098 * 60.69975 * 1 2 3 26 26 H 1.08998 * 109.46894 * 180.70593 * 1 2 3 27 27 H 1.08995 * 109.46646 * 300.70238 * 1 2 3 28 28 H 0.96997 * 120.00419 * 0.02562 * 5 3 2 29 29 H 1.08997 * 110.47708 * 37.64106 * 8 6 5 30 30 H 1.09002 * 110.53308 * 274.97498 * 8 6 5 31 31 H 1.09002 * 110.03399 * 217.13605 * 9 8 6 32 32 H 1.08995 * 110.02943 * 95.75505 * 9 8 6 33 33 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.48788 * 142.28685 * 20 10 9 35 35 H 1.09001 * 110.48482 * 264.93365 * 20 10 9 36 36 H 1.08998 * 110.48528 * 214.37822 * 21 2 1 37 37 H 1.08997 * 110.48483 * 337.01612 * 21 2 1 38 38 H 1.08996 * 110.76213 * 279.62698 * 22 21 2 39 39 H 1.09003 * 110.75149 * 156.25704 * 22 21 2 40 40 H 1.09009 * 110.48936 * 203.37543 * 23 22 21 41 41 H 1.09001 * 110.49005 * 80.73795 * 23 22 21 42 42 H 1.09002 * 110.03222 * 359.95318 * 24 2 1 43 43 H 1.08997 * 110.03028 * 121.33369 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0460 1.4160 0.0000 4 8 2.7675 1.7984 -0.8966 5 7 1.7054 2.2572 0.9963 6 6 2.2064 3.6339 0.9960 7 1 3.1930 3.6842 0.5353 8 6 1.2159 4.5832 0.2757 9 6 1.5298 5.9739 0.8651 10 6 2.1829 5.7338 2.2374 11 1 3.1895 6.1518 2.2501 12 6 1.3485 6.3624 3.3234 13 1 0.9179 5.7461 4.0987 14 6 1.1348 7.7246 3.3272 15 7 0.4061 8.2731 4.2747 16 14 1.8801 8.7907 1.9867 17 1 0.9289 8.8951 0.8511 18 1 2.1557 10.1459 2.5278 19 1 3.1484 8.1787 1.5153 20 6 2.2430 4.2050 2.4354 21 6 2.0595 -0.7553 1.2365 22 6 2.3298 -2.1897 0.7185 23 6 2.8885 -1.9396 -0.7043 24 6 2.0572 -0.7530 -1.2340 25 1 -0.3633 0.5029 -0.8961 26 1 -0.3633 -1.0276 0.0127 27 1 -0.3632 0.5247 0.8836 28 1 1.1285 1.9512 1.7136 29 1 0.1869 4.2990 0.4959 30 1 1.3929 4.5759 -0.7998 31 1 0.6092 6.5453 0.9845 32 1 2.2190 6.5092 0.2120 33 1 0.2561 9.2315 4.2777 34 1 3.1693 3.9212 2.9350 35 1 1.3800 3.8599 3.0048 36 1 2.9820 -0.2993 1.5960 37 1 1.3076 -0.7701 2.0254 38 1 1.4053 -2.7654 0.6748 39 1 3.0699 -2.6922 1.3412 40 1 2.7415 -2.8187 -1.3319 41 1 3.9449 -1.6750 -0.6584 42 1 1.2230 -1.1192 -1.8325 43 1 2.6854 -0.0941 -1.8334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336287459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:57 Heat of formation + Delta-G solvation = -70.581396 kcal Electronic energy + Delta-G solvation = -20809.584263 eV Core-core repulsion = 17852.964517 eV Total energy + Delta-G solvation = -2956.619746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43181 -38.05244 -36.81111 -33.87014 -32.22842 -31.28013 -28.90049 -28.43243 -27.52780 -25.72956 -23.63430 -22.06508 -20.86915 -20.17052 -19.47019 -18.67916 -17.07150 -16.67202 -15.82748 -15.47790 -14.96375 -14.84593 -14.39543 -14.01026 -13.87594 -13.43550 -12.97294 -12.82316 -12.56165 -12.37902 -12.20537 -11.73090 -11.69526 -11.32210 -11.21500 -11.06405 -10.97355 -10.87213 -10.82076 -10.63198 -10.46455 -10.20185 -10.02742 -9.85842 -9.49022 -9.40148 -8.94908 -8.65334 -8.55271 -6.07710 -4.06355 2.80678 3.30010 3.37842 3.41260 3.42202 4.27532 4.40269 4.42767 4.57657 4.99903 5.03735 5.13021 5.18635 5.24112 5.30167 5.41145 5.45965 5.48326 5.58854 5.64147 5.65202 5.68956 5.77490 5.85783 5.92344 6.06338 6.12853 6.13373 6.17561 6.25560 6.30145 6.45356 6.47627 6.65501 6.71977 6.90612 7.00275 7.16420 7.49073 7.75237 7.80829 8.43373 8.51543 8.95271 9.55311 11.05307 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041656 B = 0.004138 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.011891 B = 6764.428774 C = 6992.596088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 C 0.521 3.479 4 O -0.545 6.545 5 N -0.715 5.715 6 C 0.132 3.868 7 H 0.088 0.912 8 C -0.123 4.123 9 C -0.132 4.132 10 C 0.012 3.988 11 H 0.031 0.969 12 C -0.510 4.510 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.264 1.264 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.398 0.602 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 -19.488 -7.935 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C 0.307 3.693 4 O -0.423 6.423 5 N -0.364 5.364 6 C 0.028 3.972 7 H 0.106 0.894 8 C -0.162 4.162 9 C -0.170 4.170 10 C -0.007 4.007 11 H 0.049 0.951 12 C -0.547 4.547 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.541 5.541 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.221 1.221 19 H -0.188 1.188 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.153 4.153 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.233 0.767 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.767 -19.015 -8.504 20.905 hybrid contribution -0.069 0.688 -0.299 0.753 sum 1.698 -18.327 -8.803 20.403 Atomic orbital electron populations 1.21882 0.92383 1.02544 1.02590 1.21425 0.97060 0.92514 0.97846 1.20465 0.80183 0.87059 0.81612 1.90638 1.37685 1.77641 1.36337 1.46097 1.51573 1.12575 1.26165 1.22223 0.97755 0.78972 0.98275 0.89360 1.22621 0.98955 0.95995 0.98612 1.22643 1.01047 0.95306 0.98027 1.19690 0.96689 0.91323 0.92990 0.95088 1.21084 1.30970 0.92745 1.09944 0.90896 1.25010 0.94553 0.97991 0.95645 1.69908 1.39213 1.11579 1.33416 0.86925 0.80602 0.79492 0.82290 1.20286 1.22076 1.18817 1.22581 1.01032 0.97865 0.93141 1.22452 1.01422 0.95379 0.95857 1.22481 1.00866 0.96219 0.96412 1.22356 0.99810 0.97822 0.96142 1.22231 1.00103 0.96776 0.96209 0.92076 0.91513 0.91999 0.76744 0.91811 0.92804 0.91159 0.94078 0.92719 0.92669 0.91350 0.91080 0.90716 0.91343 0.91448 0.91680 0.91597 0.91487 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.04 37.16 0.30 -0.94 16 2 C -0.09 -0.92 0.78 -154.54 -0.12 -1.04 16 3 C 0.52 7.60 6.36 -10.99 -0.07 7.53 16 4 O -0.55 -10.01 14.85 5.56 0.08 -9.93 16 5 N -0.71 -10.18 5.03 -51.84 -0.26 -10.44 16 6 C 0.13 2.27 3.26 -65.89 -0.21 2.06 16 7 H 0.09 1.63 7.55 -51.93 -0.39 1.24 16 8 C -0.12 -2.26 6.53 -25.03 -0.16 -2.42 16 9 C -0.13 -2.82 4.47 -25.61 -0.11 -2.94 16 10 C 0.01 0.28 2.39 -90.66 -0.22 0.07 16 11 H 0.03 0.73 7.22 -51.93 -0.37 0.36 16 12 C -0.51 -13.93 8.92 -34.44 -0.31 -14.23 16 13 H 0.07 2.14 7.80 -52.49 -0.41 1.73 16 14 C 0.07 1.97 5.33 -17.82 -0.09 1.88 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 16 Si 0.88 21.70 24.59 -169.99 -4.18 17.52 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.26 -6.27 6.44 56.52 0.36 -5.91 16 20 C -0.11 -2.03 5.97 -25.07 -0.15 -2.18 16 21 C -0.11 -1.04 5.85 -25.07 -0.15 -1.18 16 22 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 23 C -0.12 -1.09 6.83 -25.08 -0.17 -1.26 16 24 C -0.12 -1.22 6.06 -25.61 -0.16 -1.38 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 28 H 0.40 4.77 7.93 -40.82 -0.32 4.45 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.62 6.41 -51.93 -0.33 1.29 16 32 H 0.04 0.85 7.39 -51.93 -0.38 0.47 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.28 7.56 -51.93 -0.39 0.89 16 36 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 37 H 0.07 0.58 7.84 -51.93 -0.41 0.18 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.62 7.67 -51.93 -0.40 0.23 16 43 H 0.09 1.17 6.39 -51.93 -0.33 0.84 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -31.06 327.47 -7.97 -39.03 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.52 Total: 2.65 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.80 Total: -17.19 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.51 Total: -37.01 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.18 Total: 17.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.06 -7.97 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336287459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.554 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds