Wall clock time and date at job start Mon Mar 30 2020 08:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 110.01881 * 2 1 4 4 O 1.21276 * 119.99836 * 238.61098 * 3 2 1 5 5 N 1.34773 * 119.99775 * 58.60763 * 3 2 1 6 6 C 1.46500 * 119.99760 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.67461 * 328.23097 * 6 5 3 8 8 C 1.54961 * 110.92632 * 91.53985 * 6 5 3 9 9 C 1.54270 * 104.16191 * 156.29508 * 8 6 5 10 10 C 1.53869 * 106.63967 * 336.44607 * 9 8 6 11 11 H 1.08999 * 110.03405 * 119.26051 * 10 9 8 12 12 C 1.50698 * 110.03390 * 240.69268 * 10 9 8 13 13 H 1.07996 * 120.00623 * 118.54486 * 12 10 9 14 14 C 1.37884 * 119.99638 * 298.54572 * 12 10 9 15 15 N 1.31516 * 119.99514 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 120.00038 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46929 * 89.99920 * 16 14 12 18 18 H 1.48500 * 109.47151 * 209.99890 * 16 14 12 19 19 H 1.48496 * 109.47160 * 329.99836 * 16 14 12 20 20 C 1.54268 * 106.60115 * 359.97438 * 10 9 8 21 21 C 1.54269 * 110.07359 * 121.41923 * 2 1 3 22 22 C 1.54884 * 104.19598 * 95.69340 * 21 2 1 23 23 C 1.54884 * 102.74733 * 37.94555 * 22 21 2 24 24 C 1.53877 * 110.03304 * 238.60742 * 2 1 3 25 25 H 1.08993 * 109.47098 * 60.69975 * 1 2 3 26 26 H 1.08998 * 109.46894 * 180.70593 * 1 2 3 27 27 H 1.08995 * 109.46646 * 300.70238 * 1 2 3 28 28 H 0.96997 * 120.00419 * 0.02562 * 5 3 2 29 29 H 1.08997 * 110.47708 * 37.64106 * 8 6 5 30 30 H 1.09002 * 110.53308 * 274.97498 * 8 6 5 31 31 H 1.09002 * 110.03399 * 217.13605 * 9 8 6 32 32 H 1.08995 * 110.02943 * 95.75505 * 9 8 6 33 33 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.48788 * 142.28685 * 20 10 9 35 35 H 1.09001 * 110.48482 * 264.93365 * 20 10 9 36 36 H 1.08998 * 110.48528 * 214.37822 * 21 2 1 37 37 H 1.08997 * 110.48483 * 337.01612 * 21 2 1 38 38 H 1.08996 * 110.76213 * 279.62698 * 22 21 2 39 39 H 1.09003 * 110.75149 * 156.25704 * 22 21 2 40 40 H 1.09009 * 110.48936 * 203.37543 * 23 22 21 41 41 H 1.09001 * 110.49005 * 80.73795 * 23 22 21 42 42 H 1.09002 * 110.03222 * 359.95318 * 24 2 1 43 43 H 1.08997 * 110.03028 * 121.33369 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0460 1.4160 0.0000 4 8 2.7675 1.7984 -0.8966 5 7 1.7054 2.2572 0.9963 6 6 2.2064 3.6339 0.9960 7 1 3.1930 3.6842 0.5353 8 6 1.2159 4.5832 0.2757 9 6 1.5298 5.9739 0.8651 10 6 2.1829 5.7338 2.2374 11 1 3.1895 6.1518 2.2501 12 6 1.3485 6.3624 3.3234 13 1 0.9179 5.7461 4.0987 14 6 1.1348 7.7246 3.3272 15 7 0.4061 8.2731 4.2747 16 14 1.8801 8.7907 1.9867 17 1 0.9289 8.8951 0.8511 18 1 2.1557 10.1459 2.5278 19 1 3.1484 8.1787 1.5153 20 6 2.2430 4.2050 2.4354 21 6 2.0595 -0.7553 1.2365 22 6 2.3298 -2.1897 0.7185 23 6 2.8885 -1.9396 -0.7043 24 6 2.0572 -0.7530 -1.2340 25 1 -0.3633 0.5029 -0.8961 26 1 -0.3633 -1.0276 0.0127 27 1 -0.3632 0.5247 0.8836 28 1 1.1285 1.9512 1.7136 29 1 0.1869 4.2990 0.4959 30 1 1.3929 4.5759 -0.7998 31 1 0.6092 6.5453 0.9845 32 1 2.2190 6.5092 0.2120 33 1 0.2561 9.2315 4.2777 34 1 3.1693 3.9212 2.9350 35 1 1.3800 3.8599 3.0048 36 1 2.9820 -0.2993 1.5960 37 1 1.3076 -0.7701 2.0254 38 1 1.4053 -2.7654 0.6748 39 1 3.0699 -2.6922 1.3412 40 1 2.7415 -2.8187 -1.3319 41 1 3.9449 -1.6750 -0.6584 42 1 1.2230 -1.1192 -1.8325 43 1 2.6854 -0.0941 -1.8334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336287459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:57 Heat of formation + Delta-G solvation = -89.819143 kcal Electronic energy + Delta-G solvation = -20810.418474 eV Core-core repulsion = 17852.964517 eV Total energy + Delta-G solvation = -2957.453957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51029 -39.37256 -38.01797 -35.39018 -34.09620 -32.19486 -30.21091 -29.63810 -29.03497 -26.53722 -25.46191 -23.23607 -21.68711 -21.45450 -21.09259 -19.91812 -18.65246 -18.02102 -17.27521 -16.59692 -16.34890 -16.04247 -15.89932 -15.37529 -14.84645 -14.69411 -14.31259 -14.15517 -13.95486 -13.57474 -13.35148 -13.27773 -12.76559 -12.57092 -12.51795 -12.25028 -12.04756 -11.97360 -11.94158 -11.75124 -11.67071 -11.64911 -11.56857 -11.36460 -11.31562 -10.92503 -10.72324 -10.58537 -9.97762 -8.28117 -6.30149 1.33581 1.36959 1.46279 1.66674 2.23711 2.35008 3.06779 3.49070 3.60708 3.76752 3.82969 3.92144 4.07534 4.18832 4.36619 4.43742 4.51959 4.54646 4.58462 4.68088 4.68545 4.77966 4.85188 4.89022 4.92350 4.97048 5.00087 5.03004 5.11553 5.15922 5.16963 5.23679 5.28379 5.36744 5.41383 5.44070 5.49358 5.56018 5.67690 5.79158 6.32466 6.62389 6.76351 7.29351 7.35024 8.88185 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041656 B = 0.004138 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.011891 B = 6764.428774 C = 6992.596088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 C 0.518 3.482 4 O -0.586 6.586 5 N -0.706 5.706 6 C 0.145 3.855 7 H 0.079 0.921 8 C -0.116 4.116 9 C -0.131 4.131 10 C 0.006 3.994 11 H 0.026 0.974 12 C -0.508 4.508 13 H 0.040 0.960 14 C 0.014 3.986 15 N -0.950 5.950 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.295 1.295 19 H -0.248 1.248 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.411 0.589 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 -21.562 -8.901 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.083 4.083 3 C 0.306 3.694 4 O -0.467 6.467 5 N -0.356 5.356 6 C 0.040 3.960 7 H 0.097 0.903 8 C -0.154 4.154 9 C -0.169 4.169 10 C -0.014 4.014 11 H 0.045 0.955 12 C -0.546 4.546 13 H 0.058 0.942 14 C -0.183 4.183 15 N -0.591 5.591 16 Si 0.761 3.239 17 H -0.192 1.192 18 H -0.222 1.222 19 H -0.171 1.171 20 C -0.137 4.137 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.248 0.752 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.705 -21.124 -9.463 23.209 hybrid contribution -0.055 1.294 0.049 1.296 sum 1.650 -19.830 -9.414 22.013 Atomic orbital electron populations 1.21908 0.90694 1.04126 1.02486 1.21481 0.98252 0.89747 0.98849 1.21212 0.79240 0.88398 0.80583 1.90625 1.39508 1.78670 1.37862 1.45947 1.51581 1.11360 1.26751 1.21854 0.97160 0.80416 0.96573 0.90334 1.22551 0.99583 0.94402 0.98889 1.22512 1.00074 0.97026 0.97295 1.19689 0.95462 0.93777 0.92439 0.95540 1.21381 1.30547 0.92605 1.10109 0.94171 1.25801 0.95141 0.99535 0.97798 1.70044 1.41366 1.11980 1.35694 0.86003 0.80600 0.77543 0.79798 1.19203 1.22235 1.17139 1.22430 1.01700 0.95182 0.94408 1.22491 1.01220 0.95860 0.95519 1.22485 1.01918 0.95471 0.95433 1.22359 0.98797 0.97625 0.97286 1.22246 1.00376 0.96907 0.96045 0.93001 0.89126 0.91315 0.75184 0.91172 0.92147 0.93112 0.93298 0.92690 0.91515 0.91315 0.92584 0.88811 0.89530 0.90543 0.90021 0.92887 0.90057 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.04 71.98 0.58 -1.47 16 2 C -0.08 -1.56 0.78 -52.20 -0.04 -1.60 16 3 C 0.52 14.47 6.36 87.66 0.56 15.02 16 4 O -0.59 -21.38 14.85 -3.02 -0.04 -21.42 16 5 N -0.71 -18.92 5.03 -436.31 -2.19 -21.12 16 6 C 0.15 4.79 3.26 46.31 0.15 4.95 16 7 H 0.08 2.81 7.55 -2.39 -0.02 2.79 16 8 C -0.12 -4.06 6.53 31.70 0.21 -3.85 16 9 C -0.13 -5.43 4.47 31.32 0.14 -5.29 16 10 C 0.01 0.26 2.39 -10.82 -0.03 0.23 16 11 H 0.03 1.22 7.22 -2.39 -0.02 1.20 16 12 C -0.51 -28.16 8.92 25.60 0.23 -27.93 16 13 H 0.04 2.43 7.80 -2.91 -0.02 2.40 16 14 C 0.01 0.81 5.33 84.66 0.45 1.26 16 15 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 16 Si 0.94 44.66 24.59 68.60 1.69 46.35 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.25 -11.09 6.44 99.48 0.64 -10.45 16 20 C -0.10 -3.62 5.97 31.67 0.19 -3.43 16 21 C -0.11 -1.76 5.85 31.67 0.19 -1.58 16 22 C -0.12 -1.44 6.91 31.88 0.22 -1.22 16 23 C -0.12 -1.91 6.83 31.67 0.22 -1.70 16 24 C -0.12 -2.32 6.06 31.32 0.19 -2.13 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.95 7.51 -2.39 -0.02 0.93 16 28 H 0.41 8.93 7.93 -92.71 -0.74 8.19 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 2.30 6.41 -2.39 -0.02 2.28 16 32 H 0.05 1.94 7.39 -2.39 -0.02 1.92 16 33 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.50 7.56 -2.39 -0.02 2.49 16 36 H 0.06 1.05 7.85 -2.39 -0.02 1.03 16 37 H 0.09 1.11 7.84 -2.39 -0.02 1.10 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.33 7.67 -2.39 -0.02 1.32 16 43 H 0.06 1.53 6.39 -2.39 -0.02 1.51 16 Total: -1.00 -68.23 327.47 3.17 -65.06 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.18 Total: 18.46 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.25 Total: -28.73 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.89 Total: -79.71 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.04 Total: -21.42 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.69 Total: 46.35 kcal Total: -68.23 3.17 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336287459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.758 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds