Wall clock time and date at job start Mon Mar 30 2020 06:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.47090 * 125.62687 * 0.02562 * 13 11 10 15 15 C 1.54449 * 107.29780 * 180.98083 * 14 13 11 16 16 C 1.54390 * 102.86811 * 21.51153 * 15 14 13 17 17 C 1.47572 * 125.62763 * 179.72060 * 13 11 10 18 18 C 1.52070 * 110.53943 * 207.32296 * 16 15 14 19 19 C 1.53154 * 109.58339 * 294.52815 * 18 16 15 20 20 C 1.53016 * 109.38023 * 301.36355 * 19 18 16 21 21 C 1.53006 * 109.59247 * 60.63791 * 20 19 18 22 22 C 1.52076 * 110.53401 * 83.36984 * 16 15 14 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.09004 * 109.87509 * 300.41284 * 14 13 11 29 29 H 1.09005 * 109.87360 * 61.55720 * 14 13 11 30 30 H 1.09007 * 110.72955 * 139.85337 * 15 14 13 31 31 H 1.08993 * 110.73763 * 262.98427 * 15 14 13 32 32 H 1.09002 * 110.37449 * 275.50908 * 17 13 11 33 33 H 1.08994 * 110.37757 * 37.86021 * 17 13 11 34 34 H 1.08994 * 109.44989 * 54.56070 * 18 16 15 35 35 H 1.08997 * 109.45075 * 174.49283 * 18 16 15 36 36 H 1.09005 * 109.48422 * 181.39636 * 19 18 16 37 37 H 1.08998 * 109.49132 * 61.33707 * 19 18 16 38 38 H 1.08993 * 109.45131 * 300.59401 * 20 19 18 39 39 H 1.09000 * 109.42556 * 180.66296 * 20 19 18 40 40 H 1.09000 * 109.48524 * 179.39370 * 21 20 19 41 41 H 1.08994 * 109.48889 * 59.34101 * 21 20 19 42 42 H 1.09001 * 109.44894 * 185.50591 * 22 16 15 43 43 H 1.09002 * 109.45279 * 305.43541 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 3.6292 -6.2787 0.0025 15 6 3.9416 -7.7911 -0.0222 16 6 2.6410 -8.4017 -0.5872 17 6 1.5564 -7.4786 0.0083 18 6 2.4614 -9.8278 -0.0906 19 6 3.5753 -10.7128 -0.6577 20 6 3.5320 -10.6664 -2.1866 21 6 3.7495 -9.2286 -2.6625 22 6 2.6366 -8.3354 -2.1065 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 4.0493 -5.7989 -0.8815 29 1 4.0455 -5.8289 0.9039 30 1 4.7842 -8.0004 -0.6813 31 1 4.1394 -8.1608 0.9839 32 1 1.3146 -7.7808 1.0273 33 1 0.6624 -7.4932 -0.6150 34 1 2.5060 -9.8413 0.9983 35 1 1.4938 -10.2072 -0.4188 36 1 3.4310 -11.7395 -0.3209 37 1 4.5419 -10.3484 -0.3101 38 1 2.5613 -11.0206 -2.5331 39 1 4.3171 -11.3053 -2.5910 40 1 3.7291 -9.1992 -3.7520 41 1 4.7154 -8.8700 -2.3070 42 1 1.6730 -8.6798 -2.4820 43 1 2.8034 -7.3065 -2.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336525215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:59 Heat of formation + Delta-G solvation = -70.527764 kcal Electronic energy + Delta-G solvation = -20607.076309 eV Core-core repulsion = 17650.458889 eV Total energy + Delta-G solvation = -2956.617420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62253 -38.49221 -35.85783 -33.43666 -31.83309 -31.08024 -30.69552 -29.59098 -26.62554 -24.96063 -23.20931 -22.77930 -21.69579 -20.82381 -19.06407 -18.10766 -16.90908 -16.09282 -15.88865 -15.56988 -14.73217 -14.51838 -14.41223 -14.31752 -13.98955 -13.70951 -12.91626 -12.81953 -12.67134 -12.42199 -12.32274 -12.09665 -11.83855 -11.59779 -11.44422 -11.23642 -11.09326 -10.97170 -10.92412 -10.56822 -10.39725 -10.28857 -10.21888 -9.91875 -9.62003 -9.12974 -8.95987 -8.33498 -8.27058 -5.93816 -3.98011 3.29138 3.33997 3.36274 3.41429 3.44938 4.18191 4.39634 4.46599 4.49323 4.71755 4.87446 4.96233 5.02989 5.08445 5.22662 5.29120 5.32154 5.41088 5.41886 5.44287 5.55670 5.62924 5.73862 5.77100 5.80695 5.85242 5.88933 5.93158 5.94108 6.02441 6.07754 6.24253 6.26252 6.28437 6.29769 6.62779 6.93866 7.77479 7.89621 7.93526 8.10162 8.41483 8.80855 9.10768 9.65321 11.17244 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042624 B = 0.003584 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.754952 B = 7809.691212 C = 8010.197715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.525 3.475 12 O -0.535 6.535 13 N -0.629 5.629 14 C 0.104 3.896 15 C -0.123 4.123 16 C -0.068 4.068 17 C 0.114 3.886 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.104 4.104 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 -22.711 -2.259 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.316 3.684 12 O -0.410 6.410 13 N -0.366 5.366 14 C -0.020 4.020 15 C -0.161 4.161 16 C -0.069 4.069 17 C -0.008 4.008 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.141 4.141 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.615 -22.479 -2.258 24.553 hybrid contribution 0.489 0.940 0.037 1.060 sum 10.103 -21.539 -2.222 23.895 Atomic orbital electron populations 1.70012 1.06055 1.26431 1.50343 1.25032 0.94826 0.99229 0.95354 0.86536 0.80008 0.83849 0.77570 1.19746 1.21026 1.21022 1.21257 0.92945 0.90990 1.51168 0.92576 1.18915 0.93206 0.89407 0.98597 1.21837 1.00588 0.91676 1.02258 1.21305 0.88112 0.84516 0.74465 1.90670 1.14300 1.86996 1.49068 1.48752 1.06713 1.05511 1.75655 1.21985 0.81556 0.96598 1.01826 1.22712 0.97684 0.94021 1.01658 1.21142 0.95192 0.94730 0.95842 1.22151 0.96305 0.82071 1.00318 1.21342 0.99146 0.93388 1.00193 1.21545 0.99068 0.99304 0.95569 1.21536 1.01636 0.96772 0.95770 1.21591 0.98996 0.94986 1.00095 1.21334 0.99079 1.00293 0.93399 0.93025 0.95840 0.95851 0.90423 0.90421 0.91495 0.91522 0.89918 0.90691 0.92000 0.90754 0.91640 0.91694 0.92135 0.91818 0.92092 0.92307 0.92042 0.91748 0.91795 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.83 13.29 55.43 0.74 -27.10 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.12 -2.65 4.83 -27.89 -0.13 -2.79 16 11 C 0.53 10.88 7.85 -10.99 -0.09 10.79 16 12 O -0.53 -13.38 16.25 5.56 0.09 -13.29 16 13 N -0.63 -9.86 3.32 -170.61 -0.57 -10.42 16 14 C 0.10 1.22 6.10 -2.96 -0.02 1.20 16 15 C -0.12 -1.09 4.89 -25.24 -0.12 -1.21 16 16 C -0.07 -0.66 0.55 -154.01 -0.08 -0.74 16 17 C 0.11 1.52 5.83 -2.74 -0.02 1.50 16 18 C -0.10 -0.81 4.67 -27.13 -0.13 -0.94 16 19 C -0.12 -0.79 5.76 -26.64 -0.15 -0.94 16 20 C -0.12 -0.82 5.90 -26.72 -0.16 -0.98 16 21 C -0.12 -0.92 5.75 -26.65 -0.15 -1.08 16 22 C -0.10 -1.00 4.71 -27.12 -0.13 -1.13 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.62 6.18 -51.92 -0.32 0.30 16 31 H 0.07 0.61 7.97 -51.93 -0.41 0.19 16 32 H 0.06 0.80 8.01 -51.93 -0.42 0.39 16 33 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 34 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.42 7.49 -51.93 -0.39 0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.47 6.41 -51.93 -0.33 0.14 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.77 7.80 -51.93 -0.40 0.36 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -33.85 332.91 -9.17 -43.03 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -7.72 Total: -4.79 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.71 Total: -9.34 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.17 Total: -37.52 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.85 -9.17 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336525215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.501 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds