Wall clock time and date at job start Mon Mar 30 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.47090 * 125.62687 * 0.02562 * 13 11 10 15 15 C 1.54449 * 107.29780 * 180.98083 * 14 13 11 16 16 C 1.54390 * 102.86811 * 21.51153 * 15 14 13 17 17 C 1.47572 * 125.62763 * 179.72060 * 13 11 10 18 18 C 1.52070 * 110.53943 * 207.32296 * 16 15 14 19 19 C 1.53154 * 109.58339 * 294.52815 * 18 16 15 20 20 C 1.53016 * 109.38023 * 301.36355 * 19 18 16 21 21 C 1.53006 * 109.59247 * 60.63791 * 20 19 18 22 22 C 1.52076 * 110.53401 * 83.36984 * 16 15 14 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.09004 * 109.87509 * 300.41284 * 14 13 11 29 29 H 1.09005 * 109.87360 * 61.55720 * 14 13 11 30 30 H 1.09007 * 110.72955 * 139.85337 * 15 14 13 31 31 H 1.08993 * 110.73763 * 262.98427 * 15 14 13 32 32 H 1.09002 * 110.37449 * 275.50908 * 17 13 11 33 33 H 1.08994 * 110.37757 * 37.86021 * 17 13 11 34 34 H 1.08994 * 109.44989 * 54.56070 * 18 16 15 35 35 H 1.08997 * 109.45075 * 174.49283 * 18 16 15 36 36 H 1.09005 * 109.48422 * 181.39636 * 19 18 16 37 37 H 1.08998 * 109.49132 * 61.33707 * 19 18 16 38 38 H 1.08993 * 109.45131 * 300.59401 * 20 19 18 39 39 H 1.09000 * 109.42556 * 180.66296 * 20 19 18 40 40 H 1.09000 * 109.48524 * 179.39370 * 21 20 19 41 41 H 1.08994 * 109.48889 * 59.34101 * 21 20 19 42 42 H 1.09001 * 109.44894 * 185.50591 * 22 16 15 43 43 H 1.09002 * 109.45279 * 305.43541 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 3.6292 -6.2787 0.0025 15 6 3.9416 -7.7911 -0.0222 16 6 2.6410 -8.4017 -0.5872 17 6 1.5564 -7.4786 0.0083 18 6 2.4614 -9.8278 -0.0906 19 6 3.5753 -10.7128 -0.6577 20 6 3.5320 -10.6664 -2.1866 21 6 3.7495 -9.2286 -2.6625 22 6 2.6366 -8.3354 -2.1065 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 4.0493 -5.7989 -0.8815 29 1 4.0455 -5.8289 0.9039 30 1 4.7842 -8.0004 -0.6813 31 1 4.1394 -8.1608 0.9839 32 1 1.3146 -7.7808 1.0273 33 1 0.6624 -7.4932 -0.6150 34 1 2.5060 -9.8413 0.9983 35 1 1.4938 -10.2072 -0.4188 36 1 3.4310 -11.7395 -0.3209 37 1 4.5419 -10.3484 -0.3101 38 1 2.5613 -11.0206 -2.5331 39 1 4.3171 -11.3053 -2.5910 40 1 3.7291 -9.1992 -3.7520 41 1 4.7154 -8.8700 -2.3070 42 1 1.6730 -8.6798 -2.4820 43 1 2.8034 -7.3065 -2.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336525215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:58 Heat of formation + Delta-G solvation = -90.993859 kcal Electronic energy + Delta-G solvation = -20607.963786 eV Core-core repulsion = 17650.458889 eV Total energy + Delta-G solvation = -2957.504896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64631 -39.89091 -36.92532 -35.60259 -33.29441 -32.32620 -31.71435 -30.53636 -28.24829 -26.45494 -24.31874 -23.48378 -23.22857 -21.86862 -20.29751 -19.21419 -18.68870 -17.62978 -17.24497 -16.64710 -16.39008 -15.97213 -15.75733 -15.09245 -14.92536 -14.69045 -14.32990 -14.08940 -13.95899 -13.60335 -13.50081 -13.25141 -13.14529 -12.90504 -12.83789 -12.49261 -12.39551 -12.10071 -11.97002 -11.90728 -11.69568 -11.62829 -11.31102 -11.08803 -11.03675 -10.88660 -10.69797 -10.59518 -9.62380 -8.19470 -6.34117 1.41303 1.43309 1.56704 1.65300 2.03958 2.42519 3.13343 3.33540 3.58532 3.73805 3.92807 4.05343 4.21870 4.28686 4.30758 4.34880 4.44117 4.48812 4.50158 4.57447 4.64834 4.66962 4.76411 4.81279 4.87970 4.91800 5.01896 5.08254 5.16577 5.23063 5.25612 5.32237 5.35544 5.41137 5.43489 5.48760 5.57822 5.58733 5.64431 5.82414 6.15113 6.50465 6.84152 7.22209 7.36300 8.93684 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042624 B = 0.003584 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.754952 B = 7809.691212 C = 8010.197715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.977 3.023 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.110 4.110 11 C 0.520 3.480 12 O -0.595 6.595 13 N -0.620 5.620 14 C 0.091 3.909 15 C -0.111 4.111 16 C -0.057 4.057 17 C 0.106 3.894 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.104 4.104 23 H 0.263 0.737 24 H -0.019 1.019 25 H -0.020 1.020 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.220 -23.843 -2.083 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.801 3.199 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.149 4.149 11 C 0.311 3.689 12 O -0.475 6.475 13 N -0.354 5.354 14 C -0.031 4.031 15 C -0.149 4.149 16 C -0.058 4.058 17 C -0.016 4.016 18 C -0.139 4.139 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.142 4.142 23 H 0.072 0.928 24 H -0.001 1.001 25 H -0.001 1.001 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.418 -23.671 -2.085 27.289 hybrid contribution -0.716 1.218 -0.031 1.414 sum 12.702 -22.452 -2.116 25.883 Atomic orbital electron populations 1.70195 1.08395 1.27807 1.51437 1.26182 0.95760 1.04084 0.94540 0.85226 0.79296 0.77820 0.77605 1.17486 1.20553 1.20530 1.21716 0.93979 0.91459 1.50849 0.90553 1.18693 0.93658 0.92541 0.94571 1.21572 0.99157 0.89901 1.04315 1.21102 0.87336 0.85867 0.74583 1.90641 1.16645 1.87956 1.52294 1.48672 1.08846 1.04941 1.72919 1.22380 0.78577 0.99297 1.02826 1.22746 0.97573 0.91337 1.03223 1.21090 0.94125 0.95054 0.95528 1.22393 0.96982 0.81656 1.00575 1.21342 0.99702 0.92122 1.00693 1.21534 0.98768 0.99569 0.95155 1.21542 1.01853 0.96187 0.96080 1.21565 0.98352 0.95091 1.00139 1.21324 0.99597 0.99641 0.93636 0.92811 1.00052 1.00125 0.88243 0.88123 0.90685 0.90310 0.87542 0.88940 0.91471 0.93203 0.90883 0.92260 0.91045 0.90729 0.92701 0.90955 0.91971 0.90594 0.92966 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.75 13.29 21.45 0.28 -60.46 16 2 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 3 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 4 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 9 C 0.04 2.50 4.26 29.85 0.13 2.63 16 10 C -0.11 -4.75 4.83 29.85 0.14 -4.61 16 11 C 0.52 22.33 7.85 87.66 0.69 23.02 16 12 O -0.59 -31.84 16.25 -3.04 -0.05 -31.89 16 13 N -0.62 -19.33 3.32 -812.06 -2.69 -22.02 16 14 C 0.09 1.92 6.10 86.76 0.53 2.45 16 15 C -0.11 -1.58 4.89 31.56 0.15 -1.43 16 16 C -0.06 -1.00 0.55 -51.86 -0.03 -1.03 16 17 C 0.11 2.84 5.83 86.64 0.50 3.34 16 18 C -0.10 -1.35 4.67 30.34 0.14 -1.21 16 19 C -0.11 -1.11 5.76 30.65 0.18 -0.94 16 20 C -0.12 -1.29 5.90 30.60 0.18 -1.11 16 21 C -0.11 -1.48 5.75 30.65 0.18 -1.30 16 22 C -0.10 -1.92 4.71 30.34 0.14 -1.78 16 23 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 24 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 25 H -0.02 -1.30 8.10 -2.39 -0.02 -1.31 16 26 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 27 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.11 1.10 6.18 -2.38 -0.01 1.08 16 31 H 0.09 1.07 7.97 -2.39 -0.02 1.05 16 32 H 0.07 1.73 8.01 -2.39 -0.02 1.71 16 33 H 0.05 1.57 7.94 -2.39 -0.02 1.55 16 34 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.07 0.62 7.49 -2.39 -0.02 0.60 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.83 6.41 -2.39 -0.02 0.81 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.05 7.80 -2.39 -0.02 1.04 16 Total: -1.00 -78.24 332.91 4.15 -74.09 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.95 Total: 6.78 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 3.63 Total: -13.46 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.41 Total: -82.49 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.05 Total: -31.89 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -78.24 4.15 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336525215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.907 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds